ISFesp2
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ATDU01000204 | ND | Ferroplasma sp. | Ferroplasma sp. Type II |
DNA section
IS Length : 1430 bp
Ends
IR Length : 15/18
IRL : TGCTGTGTTGAATAAATACTTAAGCAACATGTAGTCCGAGTTGCTTCATT
IRR : TGCTCTGTTGAACAAAGATCATGATTTCCGCTCTCTTCACTCTTCCTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATCTATTTCACACCAACTC | TATTATTGACGAATATTTAA | 0 |
DNA sequence
TGCTGTGTTGAATAAATACTTAAGCAACATGTAGTCCGAGTTGCTTCATTTCTTCCTCTTCTGGGATTACTGTCCATTTCATGTAATCGGCCTTATATTT
CTTGATAAAGGATACAACAGTATCCAGATCCTCCTCCCTTATCATGACCAGGCCTTTCTCATACCTTACCGAGGGAATTGTTTCCAGCAATCCTTCCCTG
TGATAATGGTATTTTGAATAGTTGGAAGGATCATCGTATCCATAGAGTTTTCGCAGCATCCTGTCAACAGAACTCTTCTTTTCCCCGGACTTATAGCTGG
CATGGATCTTCAGCAGAATTGCAGTATTCATGAAATATTATAATGGAAGGGCATAAATACCTTTTTGCTATCATACGGCTATGTATAGCCGTATTGAACA
GGTGCTGTAAATGTCGAGATGGGGAAAGACTTACAAGGACAAAAGGAACTGGAAGGAATACAACGAGGAACTCGTAATAAGGGGAAAATTCTTCTTTGAT
TTTGATTTCGTGGATCAGTGGGGCTCTGAACTTGAGAAAATGAATCTTGGTAAGAGGGGATCACCATTCCTCTTCCCGGAATCGTTCATGCAGTTCATGA
TGATATGGCACCAGTATCTGGATTACCGTGGCCTCGAGGGAATGGCAAGATCACTTGTTAATCTTGGGATAATACCAGAATATGGTGATTATACCACCAT
ATGGCACCGCATACATAATATGGTTCCTGACATTGACATTTCAGGCATTCAGTATGCAGAACTTGGTACCGATGGCACTGGAATGAAGACAAACAATGCA
GGTTCTTACAGGATAATGAAATATGGAGATCCAGATGCAAGGCAGAGAAAGCATCTTGTTGTCATTATAACAGCAGATGTGAAGACAAAGAAGATTATAG
GGATAGAATCACACATAGAGGGTACTGGATCATCTGAACCAGAAACTGCATCCACTCACATAAAGGAAGCAGTGAAGAAGGGAATAAATGTGAAAACATT
CTACGGTGATGGTGCATTTGATGTGAACAATCTCTTCAACCTTATACATTCCATCGGTGCCATACCGGTGATTAAGATCAGGAAGAATGCCTCCACTGAC
AGGCAAAGGGGATCAAAACACAGAAGAAAGGAGGTAAGAGAATACAGAGAGAAAGGTTACAAACAGTGGGCAGAAGAGAAGCATTACGGAATGAGGTGGC
CTGGGACTGAAGGAATATTCTCCGCAGTAAAGAGGAAGTTTGGAGAGAACTGTGTAAGCAGATCTACAGAAGGATTGAAAGCAGAGGGATCCCAGAGATT
ATGGATATACGACTATATAAACCAGAGGGCAAAGATGGAGGTAAATCAGATGAATTAGAGGCTGAAAAGAAGAATAAAATCAGAGGAAGAGTGAAGAGAG
CGGAAATCATGATCTTTGTTCAACAGAGCA
CTTGATAAAGGATACAACAGTATCCAGATCCTCCTCCCTTATCATGACCAGGCCTTTCTCATACCTTACCGAGGGAATTGTTTCCAGCAATCCTTCCCTG
TGATAATGGTATTTTGAATAGTTGGAAGGATCATCGTATCCATAGAGTTTTCGCAGCATCCTGTCAACAGAACTCTTCTTTTCCCCGGACTTATAGCTGG
CATGGATCTTCAGCAGAATTGCAGTATTCATGAAATATTATAATGGAAGGGCATAAATACCTTTTTGCTATCATACGGCTATGTATAGCCGTATTGAACA
GGTGCTGTAAATGTCGAGATGGGGAAAGACTTACAAGGACAAAAGGAACTGGAAGGAATACAACGAGGAACTCGTAATAAGGGGAAAATTCTTCTTTGAT
TTTGATTTCGTGGATCAGTGGGGCTCTGAACTTGAGAAAATGAATCTTGGTAAGAGGGGATCACCATTCCTCTTCCCGGAATCGTTCATGCAGTTCATGA
TGATATGGCACCAGTATCTGGATTACCGTGGCCTCGAGGGAATGGCAAGATCACTTGTTAATCTTGGGATAATACCAGAATATGGTGATTATACCACCAT
ATGGCACCGCATACATAATATGGTTCCTGACATTGACATTTCAGGCATTCAGTATGCAGAACTTGGTACCGATGGCACTGGAATGAAGACAAACAATGCA
GGTTCTTACAGGATAATGAAATATGGAGATCCAGATGCAAGGCAGAGAAAGCATCTTGTTGTCATTATAACAGCAGATGTGAAGACAAAGAAGATTATAG
GGATAGAATCACACATAGAGGGTACTGGATCATCTGAACCAGAAACTGCATCCACTCACATAAAGGAAGCAGTGAAGAAGGGAATAAATGTGAAAACATT
CTACGGTGATGGTGCATTTGATGTGAACAATCTCTTCAACCTTATACATTCCATCGGTGCCATACCGGTGATTAAGATCAGGAAGAATGCCTCCACTGAC
AGGCAAAGGGGATCAAAACACAGAAGAAAGGAGGTAAGAGAATACAGAGAGAAAGGTTACAAACAGTGGGCAGAAGAGAAGCATTACGGAATGAGGTGGC
CTGGGACTGAAGGAATATTCTCCGCAGTAAAGAGGAAGTTTGGAGAGAACTGTGTAAGCAGATCTACAGAAGGATTGAAAGCAGAGGGATCCCAGAGATT
ATGGATATACGACTATATAAACCAGAGGGCAAAGATGGAGGTAAATCAGATGAATTAGAGGCTGAAAAGAAGAATAAAATCAGAGGAAGAGTGAAGAGAG
CGGAAATCATGATCTTTGTTCAACAGAGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
312 bp | 103 aa | 331 | 20 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MNTAILLKIHASYKSGEKKSSVDRMLRKLYGYDDPSNYSKYHYHREGLLETIPSVRYEKGLVMIREEDLDTVVSFIKKYKADYMKWTVIPEEEEMKQLGL
HVA
HVA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 411 | 1358 | + | No |
Chemistry : DDE
ORF sequence :
MSRWGKTYKDKRNWKEYNEELVIRGKFFFDFDFVDQWGSELEKMNLGKRGSPFLFPESFMQFMMIWHQYLDYRGLEGMARSLVNLGIIPEYGDYTTIWHR
IHNMVPDIDISGIQYAELGTDGTGMKTNNAGSYRIMKYGDPDARQRKHLVVIITADVKTKKIIGIESHIEGTGSSEPETASTHIKEAVKKGINVKTFYGD
GAFDVNNLFNLIHSIGAIPVIKIRKNASTDRQRGSKHRRKEVREYREKGYKQWAEEKHYGMRWPGTEGIFSAVKRKFGENCVSRSTEGLKAEGSQRLWIY
DYINQRAKMEVNQMN
IHNMVPDIDISGIQYAELGTDGTGMKTNNAGSYRIMKYGDPDARQRKHLVVIITADVKTKKIIGIESHIEGTGSSEPETASTHIKEAVKKGINVKTFYGD
GAFDVNNLFNLIHSIGAIPVIKIRKNASTDRQRGSKHRRKEVREYREKGYKQWAEEKHYGMRWPGTEGIFSAVKRKFGENCVSRSTEGLKAEGSQRLWIY
DYINQRAKMEVNQMN
Blast result :
Comments
ISFesp2 is 97% aa similar to ISFesp1.
References
1] ISfinder annotation (2016)
2] Yelton,A.P., Comolli,L.R., Justice,N.B., Castelle,C., Denef,V.J., Thomas,B.C. and Banfield,J.F. (2013) BMC Genomics 14, 485.
2] Yelton,A.P., Comolli,L.R., Justice,N.B., Castelle,C., Denef,V.J., Thomas,B.C. and Banfield,J.F. (2013) BMC Genomics 14, 485.