ISFesp2

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ATDU01000204 ND Ferroplasma sp.
Ferroplasma sp. Type II
DNA section
IS Length : 1430 bp

Ends


IR Length : 15/18

IRL : TGCTGTGTTGAATAAATACTTAAGCAACATGTAGTCCGAGTTGCTTCATT
IRR : TGCTCTGTTGAACAAAGATCATGATTTCCGCTCTCTTCACTCTTCCTCTG

Insertion site


Left flankDirect repeatRight flankDR Length
TATCTATTTCACACCAACTCTATTATTGACGAATATTTAA0

DNA sequence

TGCTGTGTTGAATAAATACTTAAGCAACATGTAGTCCGAGTTGCTTCATTTCTTCCTCTTCTGGGATTACTGTCCATTTCATGTAATCGGCCTTATATTT
CTTGATAAAGGATACAACAGTATCCAGATCCTCCTCCCTTATCATGACCAGGCCTTTCTCATACCTTACCGAGGGAATTGTTTCCAGCAATCCTTCCCTG
TGATAATGGTATTTTGAATAGTTGGAAGGATCATCGTATCCATAGAGTTTTCGCAGCATCCTGTCAACAGAACTCTTCTTTTCCCCGGACTTATAGCTGG
CATGGATCTTCAGCAGAATTGCAGTATTCATGAAATATTATAATGGAAGGGCATAAATACCTTTTTGCTATCATACGGCTATGTATAGCCGTATTGAACA
GGTGCTGTAAATGTCGAGATGGGGAAAGACTTACAAGGACAAAAGGAACTGGAAGGAATACAACGAGGAACTCGTAATAAGGGGAAAATTCTTCTTTGAT
TTTGATTTCGTGGATCAGTGGGGCTCTGAACTTGAGAAAATGAATCTTGGTAAGAGGGGATCACCATTCCTCTTCCCGGAATCGTTCATGCAGTTCATGA
TGATATGGCACCAGTATCTGGATTACCGTGGCCTCGAGGGAATGGCAAGATCACTTGTTAATCTTGGGATAATACCAGAATATGGTGATTATACCACCAT
ATGGCACCGCATACATAATATGGTTCCTGACATTGACATTTCAGGCATTCAGTATGCAGAACTTGGTACCGATGGCACTGGAATGAAGACAAACAATGCA
GGTTCTTACAGGATAATGAAATATGGAGATCCAGATGCAAGGCAGAGAAAGCATCTTGTTGTCATTATAACAGCAGATGTGAAGACAAAGAAGATTATAG
GGATAGAATCACACATAGAGGGTACTGGATCATCTGAACCAGAAACTGCATCCACTCACATAAAGGAAGCAGTGAAGAAGGGAATAAATGTGAAAACATT
CTACGGTGATGGTGCATTTGATGTGAACAATCTCTTCAACCTTATACATTCCATCGGTGCCATACCGGTGATTAAGATCAGGAAGAATGCCTCCACTGAC
AGGCAAAGGGGATCAAAACACAGAAGAAAGGAGGTAAGAGAATACAGAGAGAAAGGTTACAAACAGTGGGCAGAAGAGAAGCATTACGGAATGAGGTGGC
CTGGGACTGAAGGAATATTCTCCGCAGTAAAGAGGAAGTTTGGAGAGAACTGTGTAAGCAGATCTACAGAAGGATTGAAAGCAGAGGGATCCCAGAGATT
ATGGATATACGACTATATAAACCAGAGGGCAAAGATGGAGGTAAATCAGATGAATTAGAGGCTGAAAAGAAGAATAAAATCAGAGGAAGAGTGAAGAGAG
CGGAAATCATGATCTTTGTTCAACAGAGCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
312 bp103 aa33120-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MNTAILLKIHASYKSGEKKSSVDRMLRKLYGYDDPSNYSKYHYHREGLLETIPSVRYEKGLVMIREEDLDTVVSFIKKYKADYMKWTVIPEEEEMKQLGL
HVA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
948 bp315 aa4111358+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRWGKTYKDKRNWKEYNEELVIRGKFFFDFDFVDQWGSELEKMNLGKRGSPFLFPESFMQFMMIWHQYLDYRGLEGMARSLVNLGIIPEYGDYTTIWHR
IHNMVPDIDISGIQYAELGTDGTGMKTNNAGSYRIMKYGDPDARQRKHLVVIITADVKTKKIIGIESHIEGTGSSEPETASTHIKEAVKKGINVKTFYGD
GAFDVNNLFNLIHSIGAIPVIKIRKNASTDRQRGSKHRRKEVREYREKGYKQWAEEKHYGMRWPGTEGIFSAVKRKFGENCVSRSTEGLKAEGSQRLWIY
DYINQRAKMEVNQMN

 

Blast result :
Comments
ISFesp2 is 97% aa similar to ISFesp1.
References
1] ISfinder annotation (2016)
2] Yelton,A.P., Comolli,L.R., Justice,N.B., Castelle,C., Denef,V.J., Thomas,B.C. and Banfield,J.F. (2013) BMC Genomics 14, 485.