ISTar1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ATME01000009 ND Thermoplasmatales archaeon
Thermoplasmatales archaeon E-plasma
DNA section
IS Length : 1399 bp

Ends


IR Length : 16/19

IRL : TGCTGTGTTGAATAAATATTTAAAATCCTTGTAGCTTTTCTAAATCCTCC
IRR : TGCTCTGTTGAACAAAGATCCTAATTTCAATCCTGACAACTGATTTTTTA

Insertion site


Left flankDirect repeatRight flankDR Length
AGGCAGTAATAAGTGAAGAAGCCAATGTTTAA9

DNA sequence

TGCTGTGTTGAATAAATATTTAAAATCCTTGTAGCTTTTCTAAATCCTCCTTCGAAGGGACAACTTCCCACGAGAGAATTGATGCTCCATTGTCGGTGAG
ATATTTCTTCACAGTTTCAGCATCATCACCCCTGACCATGATCAGTCCCTTTGAATATCTCACGTAAGGCAACCGGTCAAGGAACCTTGGTACTCTCGAT
CTGTATCTACCGTAATGCGAGTGGTTTTCATAGCCGTATAGTTTTCTGAAGAATCTGGACACCTCTCCAATCTTTCTGTTGCTGTATGAGAATGAGAGTG
CTATCAGGACTGCATTATCCATGACTGAAAAATATGAAAAGGAATATGAATATATGACTGTATATACATAGCAGTCAATGTGTCAAGATGGGGAAAACCT
TACAAGGACAAGAGAAACTGGAAAGAATACAATGAGGAACTTGTGATAAGAGGGAAATTCTTCTTTGATCTGGATTTCGTGGATCAGTGGGACTCCGAAT
TGAAGAAAATGAATCTTGGGAAGAGGGGATCACCATTCCGCTTCCCCGGTTCATTCATGCAGTTCATGATGATCTGGCACCAGTATCTGGACTACCGTGG
CCTTGAAGGCATGGCAAGATCCCTTGTTGATCTTGGACTAATACCAAGATATGGTGATTATACCACATTCTGGTACCGCATACATGACATGATGCCTGAA
CTGGACATTTCAGGCATGCAGTATGCAGAACTCGGCACCGATGGTACAGGATTGAAGACAAACAATGCAGGATCCTACAGAATAATGAAATATGGTGATC
CAGATGCAAGGAAAAGAAAGCATCTTGTTGTGATCATAACAGCAGATGTGAGGACAAAGAAGATCATAGGAATAGAATCTCACATTGAAGGTACCGGTTC
ATCGGAACCTGAGACTGCATCCAAACACATAACAGATGCAGTGATGAAAGGAACAAGAGTGAAGGAATTCTATGGCGATGGTGCATTCGATGTCAACGAT
CTCTTCAATGCATTGAATCTTACGAAAACAAAACCTGTGATAAAGATCAGGAAGAATGCCTCTGCAGATCATTACAGGGGAAGCAAGTACAGAAGGAGAG
CGGTCAGGGATTACAAGGAGAAAGGATACAAATCATGGGCAGCTGACAATTCATACGGAATGAGATGGCCGGGAACAGAGGGCATATTCTCCGCCACAAA
GAGGAAGTTTGGGGAGAACTGTGTTAGCTGGAGCACAGAAGGCCTTGAATCTGGGGGGTACCAGAGGTTCTGGATATATGACTATATAAACCAGAGGGCA
AAGAAGGAGGTAAAGTGCATGAATTAGGATCCGGAAGAAAGAATTAAGCTAAAAAATCAGTTGTCAGGATTGAAATTAGGATCTTTGTTCAACAGAGCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
303 bp100 aa32220-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MDNAVLIALSFSYSNRKIGEVSRFFRKLYGYENHSHYGRYRSRVPRFLDRLPYVRYSKGLIMVRGDDAETVKKYLTDNGASILSWEVVPSKEDLEKLQGF

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
948 bp315 aa3801327+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRWGKPYKDKRNWKEYNEELVIRGKFFFDLDFVDQWDSELKKMNLGKRGSPFRFPGSFMQFMMIWHQYLDYRGLEGMARSLVDLGLIPRYGDYTTFWYR
IHDMMPELDISGMQYAELGTDGTGLKTNNAGSYRIMKYGDPDARKRKHLVVIITADVRTKKIIGIESHIEGTGSSEPETASKHITDAVMKGTRVKEFYGD
GAFDVNDLFNALNLTKTKPVIKIRKNASADHYRGSKYRRRAVRDYKEKGYKSWAADNSYGMRWPGTEGIFSATKRKFGENCVSWSTEGLESGGYQRFWIY
DYINQRAKKEVKCMN

 

Blast result :
Comments
ISTar1 is 51% aa similar to ISSis3.
References
1] ISfinder annotation (2016)
2] Yelton,A.P., Comolli,L.R., Justice,N., Castelle,C., Denef,V.J., Thomas,B.C. and Banfield,J.F. (2013) Direct submission GenBank.