ISTar1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ATME01000009 | ND | Thermoplasmatales archaeon | Thermoplasmatales archaeon E-plasma |
DNA section
IS Length : 1399 bp
Ends
IR Length : 16/19
IRL : TGCTGTGTTGAATAAATATTTAAAATCCTTGTAGCTTTTCTAAATCCTCC
IRR : TGCTCTGTTGAACAAAGATCCTAATTTCAATCCTGACAACTGATTTTTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGCAGTAATAA | GTGAAGAAG | CCAATGTTTAA | 9 |
DNA sequence
TGCTGTGTTGAATAAATATTTAAAATCCTTGTAGCTTTTCTAAATCCTCCTTCGAAGGGACAACTTCCCACGAGAGAATTGATGCTCCATTGTCGGTGAG
ATATTTCTTCACAGTTTCAGCATCATCACCCCTGACCATGATCAGTCCCTTTGAATATCTCACGTAAGGCAACCGGTCAAGGAACCTTGGTACTCTCGAT
CTGTATCTACCGTAATGCGAGTGGTTTTCATAGCCGTATAGTTTTCTGAAGAATCTGGACACCTCTCCAATCTTTCTGTTGCTGTATGAGAATGAGAGTG
CTATCAGGACTGCATTATCCATGACTGAAAAATATGAAAAGGAATATGAATATATGACTGTATATACATAGCAGTCAATGTGTCAAGATGGGGAAAACCT
TACAAGGACAAGAGAAACTGGAAAGAATACAATGAGGAACTTGTGATAAGAGGGAAATTCTTCTTTGATCTGGATTTCGTGGATCAGTGGGACTCCGAAT
TGAAGAAAATGAATCTTGGGAAGAGGGGATCACCATTCCGCTTCCCCGGTTCATTCATGCAGTTCATGATGATCTGGCACCAGTATCTGGACTACCGTGG
CCTTGAAGGCATGGCAAGATCCCTTGTTGATCTTGGACTAATACCAAGATATGGTGATTATACCACATTCTGGTACCGCATACATGACATGATGCCTGAA
CTGGACATTTCAGGCATGCAGTATGCAGAACTCGGCACCGATGGTACAGGATTGAAGACAAACAATGCAGGATCCTACAGAATAATGAAATATGGTGATC
CAGATGCAAGGAAAAGAAAGCATCTTGTTGTGATCATAACAGCAGATGTGAGGACAAAGAAGATCATAGGAATAGAATCTCACATTGAAGGTACCGGTTC
ATCGGAACCTGAGACTGCATCCAAACACATAACAGATGCAGTGATGAAAGGAACAAGAGTGAAGGAATTCTATGGCGATGGTGCATTCGATGTCAACGAT
CTCTTCAATGCATTGAATCTTACGAAAACAAAACCTGTGATAAAGATCAGGAAGAATGCCTCTGCAGATCATTACAGGGGAAGCAAGTACAGAAGGAGAG
CGGTCAGGGATTACAAGGAGAAAGGATACAAATCATGGGCAGCTGACAATTCATACGGAATGAGATGGCCGGGAACAGAGGGCATATTCTCCGCCACAAA
GAGGAAGTTTGGGGAGAACTGTGTTAGCTGGAGCACAGAAGGCCTTGAATCTGGGGGGTACCAGAGGTTCTGGATATATGACTATATAAACCAGAGGGCA
AAGAAGGAGGTAAAGTGCATGAATTAGGATCCGGAAGAAAGAATTAAGCTAAAAAATCAGTTGTCAGGATTGAAATTAGGATCTTTGTTCAACAGAGCA
ATATTTCTTCACAGTTTCAGCATCATCACCCCTGACCATGATCAGTCCCTTTGAATATCTCACGTAAGGCAACCGGTCAAGGAACCTTGGTACTCTCGAT
CTGTATCTACCGTAATGCGAGTGGTTTTCATAGCCGTATAGTTTTCTGAAGAATCTGGACACCTCTCCAATCTTTCTGTTGCTGTATGAGAATGAGAGTG
CTATCAGGACTGCATTATCCATGACTGAAAAATATGAAAAGGAATATGAATATATGACTGTATATACATAGCAGTCAATGTGTCAAGATGGGGAAAACCT
TACAAGGACAAGAGAAACTGGAAAGAATACAATGAGGAACTTGTGATAAGAGGGAAATTCTTCTTTGATCTGGATTTCGTGGATCAGTGGGACTCCGAAT
TGAAGAAAATGAATCTTGGGAAGAGGGGATCACCATTCCGCTTCCCCGGTTCATTCATGCAGTTCATGATGATCTGGCACCAGTATCTGGACTACCGTGG
CCTTGAAGGCATGGCAAGATCCCTTGTTGATCTTGGACTAATACCAAGATATGGTGATTATACCACATTCTGGTACCGCATACATGACATGATGCCTGAA
CTGGACATTTCAGGCATGCAGTATGCAGAACTCGGCACCGATGGTACAGGATTGAAGACAAACAATGCAGGATCCTACAGAATAATGAAATATGGTGATC
CAGATGCAAGGAAAAGAAAGCATCTTGTTGTGATCATAACAGCAGATGTGAGGACAAAGAAGATCATAGGAATAGAATCTCACATTGAAGGTACCGGTTC
ATCGGAACCTGAGACTGCATCCAAACACATAACAGATGCAGTGATGAAAGGAACAAGAGTGAAGGAATTCTATGGCGATGGTGCATTCGATGTCAACGAT
CTCTTCAATGCATTGAATCTTACGAAAACAAAACCTGTGATAAAGATCAGGAAGAATGCCTCTGCAGATCATTACAGGGGAAGCAAGTACAGAAGGAGAG
CGGTCAGGGATTACAAGGAGAAAGGATACAAATCATGGGCAGCTGACAATTCATACGGAATGAGATGGCCGGGAACAGAGGGCATATTCTCCGCCACAAA
GAGGAAGTTTGGGGAGAACTGTGTTAGCTGGAGCACAGAAGGCCTTGAATCTGGGGGGTACCAGAGGTTCTGGATATATGACTATATAAACCAGAGGGCA
AAGAAGGAGGTAAAGTGCATGAATTAGGATCCGGAAGAAAGAATTAAGCTAAAAAATCAGTTGTCAGGATTGAAATTAGGATCTTTGTTCAACAGAGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
303 bp | 100 aa | 322 | 20 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MDNAVLIALSFSYSNRKIGEVSRFFRKLYGYENHSHYGRYRSRVPRFLDRLPYVRYSKGLIMVRGDDAETVKKYLTDNGASILSWEVVPSKEDLEKLQGF
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 380 | 1327 | + | No |
Chemistry : DDE
ORF sequence :
MSRWGKPYKDKRNWKEYNEELVIRGKFFFDLDFVDQWDSELKKMNLGKRGSPFRFPGSFMQFMMIWHQYLDYRGLEGMARSLVDLGLIPRYGDYTTFWYR
IHDMMPELDISGMQYAELGTDGTGLKTNNAGSYRIMKYGDPDARKRKHLVVIITADVRTKKIIGIESHIEGTGSSEPETASKHITDAVMKGTRVKEFYGD
GAFDVNDLFNALNLTKTKPVIKIRKNASADHYRGSKYRRRAVRDYKEKGYKSWAADNSYGMRWPGTEGIFSATKRKFGENCVSWSTEGLESGGYQRFWIY
DYINQRAKKEVKCMN
IHDMMPELDISGMQYAELGTDGTGLKTNNAGSYRIMKYGDPDARKRKHLVVIITADVRTKKIIGIESHIEGTGSSEPETASKHITDAVMKGTRVKEFYGD
GAFDVNDLFNALNLTKTKPVIKIRKNASADHYRGSKYRRRAVRDYKEKGYKSWAADNSYGMRWPGTEGIFSATKRKFGENCVSWSTEGLESGGYQRFWIY
DYINQRAKKEVKCMN
Blast result :
Comments
ISTar1 is 51% aa similar to ISSis3.
References
1] ISfinder annotation (2016)
2] Yelton,A.P., Comolli,L.R., Justice,N., Castelle,C., Denef,V.J., Thomas,B.C. and Banfield,J.F. (2013) Direct submission GenBank.
2] Yelton,A.P., Comolli,L.R., Justice,N., Castelle,C., Denef,V.J., Thomas,B.C. and Banfield,J.F. (2013) Direct submission GenBank.