ISMeco1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003243 ND Methanocella conradii
Methanocella conradii HZ254
DNA section
IS Length : 1062 bp

Ends


IR Length : 23/26

IRL : TGCTTTGTTGAATAAATGGTGGTTTTTAATTGGTTGGTGTGCTTGCGAGG
IRR : TGCTTTGTTGAATAAATTGGGGTATTCTTTTTTGCCTGGTGTTCTTGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTAAAGTTCTTTTCCGTAATATTAA8

DNA sequence

TGCTTTGTTGAATAAATGGTGGTTTTTAATTGGTTGGTGTGCTTGCGAGGGTATTTGGTTTATGGGTTTTTTGTTGTTTTTATGCGTAAAAAACGTGGGG
GGCGGTGGGGTAAGAAGTACGAGGATAAGCGGGATTGGAAGGAGTATAACGAGGAACTGGTAAGGCGGGGCGAATTGTACTTGAGCCTTGATTTCTTGGA
GCGGTGGGGCGAGGAAGTAAGGAAGATGAACGAGGGGAAGCGGGGTCGGCCCTTTCGTTTCCCGGAGGCGTTCGTAGAATGGATGGCCCTGTTGCACGTG
TGGTTTTTCATGCCCTTCAGGCAGATGGAAGGGTTTCTCAGGGCTTTGTCACAGCACGCCCCCTTGGAGCCGGCTGATTACACGACCCTTTTTAAGAGGA
TAAAGGGTTTGAAACTGGATCTTTCCAGCACTATCGTGGCTGGCAGTGACGTGGTCATAGCCGTGGATAGTACGGGCATTCGTGTTACCAACCGGGGGGA
GTGGATGCGGGAGAAGTGGAACAACCACCGGGGGTGGATCAAGGTGCACCTCAGCGTGGACGTGGAGAGCAAACAAATCCTTGGATTGGAGATAACCAAC
GAGGAGGTCGGCGACGCTGACATGTTCCCCTCGCTGTTAGAGCAGAGCAAGGCCAACTCGAAGGGCGTAATAAAAGTGTTGGCTGACGGCGCCTACGATG
ACAGGCATGCCTTCAACCTCTTGAAAAAAGGCGGGATAGAGTCGGGGATCAAGACGAGAAGCAACGCCAGCACGAAATCCCATGGCTCGCTTTACCGGGC
CCAGTGCGTGAGGGAAAGGCAAAACCTGGGTTACAAGGAGTGGAGCAAAAAGAAGGGCTATGGAAAACGATGGGGCGTAGAAGGCGTCATATCCGTAGTT
AAGAGGATCTTCGGCGAAACCGTGAGAGCGGCCAGCATACAAGGAATGTACCGGGAGATGAGAACAAAACTATTAGCATACAACATACTACTAAACATGA
TATAGGCCAAGCCCGCAAGAACACCAGGCAAAAAAGAATACCCCAATTTATTCAACAAAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa551005+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVYGFFVVFMRKKRGGRWGKKYEDKRDWKEYNEELVRRGELYLSLDFLERWGEEVRKMNEGKRGRPFRFPEAFVEWMALLHVWFFMPFRQMEGFLRALSQ
HAPLEPADYTTLFKRIKGLKLDLSSTIVAGSDVVIAVDSTGIRVTNRGEWMREKWNNHRGWIKVHLSVDVESKQILGLEITNEEVGDADMFPSLLEQSKA
NSKGVIKVLADGAYDDRHAFNLLKKGGIESGIKTRSNASTKSHGSLYRAQCVRERQNLGYKEWSKKKGYGKRWGVEGVISVVKRIFGETVRAASIQGMYR
EMRTKLLAYNILLNMI

 

Blast result :
Comments
ISMeco1 is 66% aa similar to ISMth3.
References
1] ISfinder annotation (2016)
2] Lu,Z. and Lu,Y. (2012) PLoS ONE 7 (4), E35279
3] Lu,Z. and Lu,Y. (2012) J. Bacteriol. 194 (9), 2398-2399
4] Lyu,Z. and Lu,Y. (2015) Environ Microbiol Rep 7 (3), 526-537