ISMesp5

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AYWO01000011 ND Mesorhizobium sp.
Mesorhizobium sp. LNHC252B00
DNA section
IS Length : 1764 bp

Ends


IR Length : 19/21

IRL : GTTTCCGTCCATAAACGCCAACATATTGATATTCTTGCGTGAATCGGCAT
IRR : GTTTCCATCCATAAACGCCCATTTTGGTGAGGATTTACAGAGGTTTGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
GACCCCCCGAATTC TAACCTATAGACTA GAGGAGGTGGAGCTG0

DNA sequence

GTTTCCGTCCATAAACGCCAACATATTGATATTCTTGCGTGAATCGGCATTTTGCGCAGGCAAGGCCCGGCGGTTTCAGGTACACTTTGGTCTCATGCCA
CTGATTCCAAAGCACAATCTGCAACCGCCGGAGCCGACAATGCGCCAAGAACGCACCGTCCAAGCCAGCATATTCGATCTTTTTGCCGCGCACGAGATCG
GCCACGAACTGAAGGCGATGTCGCAGTGGCTGGACGAGCACCCCGACCTGCTTGGCTTGGTGGCGCGAGACCTGGTTCGGAGCAGCGTCAGGGCCACCGG
ACGGCAAGGCCTACCTGCTGAAGCGGTGTTGCGCTGTGCGCTTCTCAAGCAATACCGGCAACTGAGCTATCAGGAACTGGCATTCCACCTCGAGGACTCA
GCCTCATTTCGCGCCTTTGCCCGCCTGCCATGGTCGTGGAGCCCGCAGAAGTCGGTGCTGCAAAAGACGATCAGCGCGATCCGGTCCGACACCTGGGAAG
AGATCAATCGGGCGCTGCTGTCGAATGCCCGGCAGGTAAAACTGGAAGACGGTGCGGTCGTGCGGCTGGACAGCACTGTGACCTCGGCACTCATGCACGA
ACCGAGCGACAGCAGCCTGCTGTGGGACGCTGTGCGGGTCATGGTGCGCCTGTTGAAGCAGGCTGATGCCTTGGCCGGTGGCGCCGGCTTGGAATGGCGA
AATCATTGCCGCGCGGCCAAGAAGCGCGCCCGCAAGATCCAGTTCACACGCGGCCGACCCAACCGCGTCCAACTCTACCGTGAACTGATTGCGATCGCCT
GCGCGACCTTGGCCTATCTGAAGCAGGCCACGGAACGATTGGCCGTGGCGAGCACTCCGCTCATCGCACTGTGGCAGGCCCAGGTTAGTCACCATCGGCC
GCTGATCGAGCAAATCATCGCCCAGAGTGAGCGACGAGTGCTGGCCGGGAACTTGGTGCCGGCCAGCGACAAGCTGGTCAGCCTGTTCGAGCCCCATGCC
GATATCATCGTCAAAGGCAGCCGCGACACCGAATACGGTCACAAACTCAACCTGACCACCGGCAGGAGCGGCATGATCCTCGATCTGGTGATCGAGGCGG
GCAATCCGCGCGACAGCGATCGATTGCTGCCGATGCTGGAACGCCACATCGGCATCTGGGGCCGGGCGCCGCGGCAGGCGGCGGCCGACGGCGGCTTTGC
CAGTCGCGACAATCTGGCTACAGCCAAGACCTTGGGCGTTCGCGACATGGCATTCCACAAGAAAGCCGGCCTCAGGATCGAGGACATGGTTAGAAGCAAT
TGGGTCTACCGCAAGCTGCGCAACTTCCGTGCCGGCATCGAGGCCGACATCTCGTGCCTCAAGCGTGCTTACGGCTTGGCGCGCTGCACCTGGCGCGGCC
TTGATCACTTCAAGAGCTACGTCTGGTCCTCGGTCGTGGCCTACAATCTCGTCCTCTTCACACGTCTCAAACCGACCTGACGGCGAGCCATTGCGCGGGT
CAGCAGCCCGCCGGCAGGCGCCGGCTCCATAGCCACGACTAACTTCCGTTCGGCGAGTTCTATCTGGCGTGATCCATTGGACTTCGCGTCGGCACGGTAC
CGCAAACGACGTTCGTCCTGCGGCAAACCTCTGTAAATCCTCACCAAAATGGGCGTTTATGGATGGAAACTANTCAGAAGATCGACCGCGCGGGCGCAAA
CGACGTTCGTCCTGCGGCAAACCTCTGTAAATCCTCACCAAAATGGGCGTTTATGGATGGAAAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1341 bp446 aa1401480+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRQERTVQASIFDLFAAHEIGHELKAMSQWLDEHPDLLGLVARDLVRSSVRATGRQGLPAEAVLRCALLKQYRQLSYQELAFHLEDSASFRAFARLPWSW
SPQKSVLQKTISAIRSDTWEEINRALLSNARQVKLEDGAVVRLDSTVTSALMHEPSDSSLLWDAVRVMVRLLKQADALAGGAGLEWRNHCRAAKKRARKI
QFTRGRPNRVQLYRELIAIACATLAYLKQATERLAVASTPLIALWQAQVSHHRPLIEQIIAQSERRVLAGNLVPASDKLVSLFEPHADIIVKGSRDTEYG
HKLNLTTGRSGMILDLVIEAGNPRDSDRLLPMLERHIGIWGRAPRQAAADGGFASRDNLATAKTLGVRDMAFHKKAGLRIEDMVRSNWVYRKLRNFRAGI
EADISCLKRAYGLARCTWRGLDHFKSYVWSSVVAYNLVLFTRLKPT

 

Blast result :
Comments
ISMesp5 is 93% aa similar to ISRtr6.
References
1] ISfinder annotation (2016)
2] Porter,S.S., Chang,P.L., Conow,C.A., Dunham,J.P. and Friesen,M.L. (2013) Direct submission GenBank.