ISMav10
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AYNT01000154 | ND | Mycobacterium avium | Mycobacterium avium 10-5581 |
DNA section
IS Length : 1576 bp
Ends
IR Length : 16
IRL : CTAGGACCTGAAAAAGTCGGCGCGTTGATCCACGATTGGATGGCGTTGAG
IRR : CTAGGACCTGAAAAAGGTTGTCGGGGTGGATGGCGTTCGACGGAGCCGAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAGGGGCTGGGCGGC | TAGCTA | GCGGCTGCGGAGGG | 6 |
DNA sequence
CTAGGACCTGAAAAAGTCGGCGCGTTGATCCACGATTGGATGGCGTTGAGCTGGGACGATGGCCTTAATGCCCTTGTTGCGGAAGGGATTGAGGCCATCG
TGTTTAAGACTGTAAACGACCAGCCGACGTTGTGGGACGCGATATTGCCGTCGGAGCTGCTCGTGTTGCCTGCCGAGTTGGCGCGGGTGGATGCGCTGCT
AGATGATGCGGTGTTCTTCGCGCCGTTCGCGACGTATTTCGATGCCTGGATCGGGCGTCCGTCCATTCCGATGGAAACCTATCTACGGTTGATGTTTTTG
AAGTTTCGCTACCGGCTGGGTTATGAGTCGCTGTGCCGGGAGGTGGCCGATTCGATCTCCTGGCAACGGTTTTGCCGCATCCCGTTCGGTACCCGGGTGC
CGCATCCGACCACGTTGATGAAGATCACCACCCGATGTGGCGGCGAGGCGGTCGCTGCGCTGAACGAGGCGCTGTTGGTCAAGGCCGCCGACGCTAAGCT
GTTGCGCACCGATCGGGTCCGCGCCGACACCACGGTGGTGTGCGCTGATGTGGGTTATCCGACCGATTCGGGCCTGTTGGCCCAGGCGGTGGGCGCGATG
TGTCGCAGCGTGGCGCGGATCAAGACCGCTGGTGGCGCCAGCCGTACCAAAGCTCGTGATCGACGCCGCAGCGTGGGTCGGCGTGCCCGTGCGATCGCCT
CGAAGCTGCGGCTACGTGGTGCCCAGCAGCGCGATCAGGCCCAGGCCGTGGTACGGCGGATCACCGGGGAGCTGGCCGATATCGCCGAGCAGACAATGCG
CGAGGTGACCGCGGTAATCCGCAACGCCCGCCGCGCACTGGGCACCGCCACCGGATCCCGCCGAGGCCGGCTGGCTCAGGCGATCAACCACCTTGACACC
ATCGTGGAACGCACCAGGAGGCTGGTGGCACAGTCTCGCAGCCGACTGGCCGGGGTGATGCCCGACTCGAGCACCCGGGTCGTGAGCCTGCACGATGTCG
ATGCGCGCCCGATCCGTAAAGGACGACTGGGCAAGCCCGTCGAATTCGGCTATAAAGCCCAGGTCGTTGATAACGCCGACGGCGTCATCCTCGACCACAA
CGTCGAGCGCGGAAACCCCCATGATGCAGCACAATTGGCGCCGGCGATCGAACGGATCACCCGCCGAACCGGGCGCCCGCCACGGGCGGTGACCGCTGAT
CGGGGCTACGGCCTGGCCTCGGTCGAACGCGACCTGCACCAGCTCGGCGTGCGCAGCGTCGTCATTCCCCGAATGAGCAACCCCGGCGCGGCCCGCCGCG
CATTTGAACACCGACGAGCCTTCCGCGACAAAGTCAAATGGCGAACCGGATCGGAGGGACGAATCAACCACCTCAAACGAAGCTACGGCTGGAATCGCAC
CGAACTCACCGGCATCAAAGGCGCCCGAACCTGGTGCGGACACGGCGTCTTCGCCCACAACCTGGTCAAGATCAGCACCCTCGCCGCATGAAATGGACGA
CAAAATCAAATCGACATCCTCAACCACTCGGCTCCGTCGAACGCCATCCACCCCGACAACCTTTTTCAGGTCCTAG
TGTTTAAGACTGTAAACGACCAGCCGACGTTGTGGGACGCGATATTGCCGTCGGAGCTGCTCGTGTTGCCTGCCGAGTTGGCGCGGGTGGATGCGCTGCT
AGATGATGCGGTGTTCTTCGCGCCGTTCGCGACGTATTTCGATGCCTGGATCGGGCGTCCGTCCATTCCGATGGAAACCTATCTACGGTTGATGTTTTTG
AAGTTTCGCTACCGGCTGGGTTATGAGTCGCTGTGCCGGGAGGTGGCCGATTCGATCTCCTGGCAACGGTTTTGCCGCATCCCGTTCGGTACCCGGGTGC
CGCATCCGACCACGTTGATGAAGATCACCACCCGATGTGGCGGCGAGGCGGTCGCTGCGCTGAACGAGGCGCTGTTGGTCAAGGCCGCCGACGCTAAGCT
GTTGCGCACCGATCGGGTCCGCGCCGACACCACGGTGGTGTGCGCTGATGTGGGTTATCCGACCGATTCGGGCCTGTTGGCCCAGGCGGTGGGCGCGATG
TGTCGCAGCGTGGCGCGGATCAAGACCGCTGGTGGCGCCAGCCGTACCAAAGCTCGTGATCGACGCCGCAGCGTGGGTCGGCGTGCCCGTGCGATCGCCT
CGAAGCTGCGGCTACGTGGTGCCCAGCAGCGCGATCAGGCCCAGGCCGTGGTACGGCGGATCACCGGGGAGCTGGCCGATATCGCCGAGCAGACAATGCG
CGAGGTGACCGCGGTAATCCGCAACGCCCGCCGCGCACTGGGCACCGCCACCGGATCCCGCCGAGGCCGGCTGGCTCAGGCGATCAACCACCTTGACACC
ATCGTGGAACGCACCAGGAGGCTGGTGGCACAGTCTCGCAGCCGACTGGCCGGGGTGATGCCCGACTCGAGCACCCGGGTCGTGAGCCTGCACGATGTCG
ATGCGCGCCCGATCCGTAAAGGACGACTGGGCAAGCCCGTCGAATTCGGCTATAAAGCCCAGGTCGTTGATAACGCCGACGGCGTCATCCTCGACCACAA
CGTCGAGCGCGGAAACCCCCATGATGCAGCACAATTGGCGCCGGCGATCGAACGGATCACCCGCCGAACCGGGCGCCCGCCACGGGCGGTGACCGCTGAT
CGGGGCTACGGCCTGGCCTCGGTCGAACGCGACCTGCACCAGCTCGGCGTGCGCAGCGTCGTCATTCCCCGAATGAGCAACCCCGGCGCGGCCCGCCGCG
CATTTGAACACCGACGAGCCTTCCGCGACAAAGTCAAATGGCGAACCGGATCGGAGGGACGAATCAACCACCTCAAACGAAGCTACGGCTGGAATCGCAC
CGAACTCACCGGCATCAAAGGCGCCCGAACCTGGTGCGGACACGGCGTCTTCGCCCACAACCTGGTCAAGATCAGCACCCTCGCCGCATGAAATGGACGA
CAAAATCAAATCGACATCCTCAACCACTCGGCTCCGTCGAACGCCATCCACCCCGACAACCTTTTTCAGGTCCTAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1362 bp | 453 aa | 130 | 1491 | + | No |
Chemistry : DDE
ORF sequence :
MWDAILPSELLVLPAELARVDALLDDAVFFAPFATYFDAWIGRPSIPMETYLRLMFLKFRYRLGYESLCREVADSISWQRFCRIPFGTRVPHPTTLMKIT
TRCGGEAVAALNEALLVKAADAKLLRTDRVRADTTVVCADVGYPTDSGLLAQAVGAMCRSVARIKTAGGASRTKARDRRRSVGRRARAIASKLRLRGAQQ
RDQAQAVVRRITGELADIAEQTMREVTAVIRNARRALGTATGSRRGRLAQAINHLDTIVERTRRLVAQSRSRLAGVMPDSSTRVVSLHDVDARPIRKGRL
GKPVEFGYKAQVVDNADGVILDHNVERGNPHDAAQLAPAIERITRRTGRPPRAVTADRGYGLASVERDLHQLGVRSVVIPRMSNPGAARRAFEHRRAFRD
KVKWRTGSEGRINHLKRSYGWNRTELTGIKGARTWCGHGVFAHNLVKISTLAA
TRCGGEAVAALNEALLVKAADAKLLRTDRVRADTTVVCADVGYPTDSGLLAQAVGAMCRSVARIKTAGGASRTKARDRRRSVGRRARAIASKLRLRGAQQ
RDQAQAVVRRITGELADIAEQTMREVTAVIRNARRALGTATGSRRGRLAQAINHLDTIVERTRRLVAQSRSRLAGVMPDSSTRVVSLHDVDARPIRKGRL
GKPVEFGYKAQVVDNADGVILDHNVERGNPHDAAQLAPAIERITRRTGRPPRAVTADRGYGLASVERDLHQLGVRSVVIPRMSNPGAARRAFEHRRAFRD
KVKWRTGSEGRINHLKRSYGWNRTELTGIKGARTWCGHGVFAHNLVKISTLAA
Blast result :
Comments
ISMav10 is 85% aa similar to ISMav9.
There is an empty site in Mycobacterium avium subsp. avium strain DJO-44271, CP009614.1.
There is an empty site in Mycobacterium avium subsp. avium strain DJO-44271, CP009614.1.
References
1] ISfinder annotation (2016)
2] Bannantine,J.P., Robbe-Austerman,S. and O'Connell,C. (2013) Direct submission.
2] Bannantine,J.P., Robbe-Austerman,S. and O'Connell,C. (2013) Direct submission.