ISMesp3

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AYWO01000016 ND Mesorhizobium sp.
Mesorhizobium sp. LNHC252B00
DNA section
IS Length : 1735 bp

Ends


IR Length : 16/17

IRL : GTTTCCGTCCACAAACGGCAAATAATTGATTTTGTTGAGTGAATCGTAGC
IRR : GTTTCCGTCCATAAACGCGCCTATTTTGCAGCTTTTGCAAGCACTTAACC

Insertion site


Left flankDirect repeatRight flankDR Length
GGACCCTGGAAAC TAGTCTATAGCTA GGCCTTGAAGAAGGCCAGC0

DNA sequence

GTTTCCGTCCACAAACGGCAAATAATTGATTTTGTTGAGTGAATCGTAGCTTTGCATGAGCAAGGCCCGGCGGTTTCAGGTATCTTGGCTCATGCCACTG
AGTCCAAAACCCTGCCACCGCCGGAGCCGACAATGCGCCAAGAACGCACCGTCCAAGCCAGCATATTCGATGTTTTCGCCACGCACGAGATCGGCCACGA
ACTGAAGGCGATGTCGCAATGGCTGGACGAGCATTGCGATCTGCTTGGCCTGGTGGCCGGAGATCTGGTTCGGGTCGGCGTCAAAGCCACCGGACGGCAG
GGCCTGCCGGCCGAAGCGGTGTTGCGCTGCGCGATCCTCAAGCAGTACCGGCAACTGAGCTACCAGGAGCTGGCGTTCCATCTCGAGGACTCCGCCTCGT
TTCGCGCCTTTGCCCGCCTGCCATGGTCGTGGAGCCCACAGAAGTCGGTGCTGCAAAGGACGATCAGCGCGATCCTGCCCGAGACATGGGAATCGATCAA
TCGGACGCTGCTGTCGAGCGCTCAGCAGGCGAAGCTTGAAGACGGCGCGGTCGTGCGGCTGGACAGCACCGTGACTTCGGCACTCATGCACGAGCCGAGC
GACAGCAGCCTGCTTTGGGATGCAGTGCGGGTCATGGTGCGCCTGCTGAAGCGGGCCGATACCTTGGTCGGCGGCGCCGGCTCATGGCGCGATCATTGCC
GTGCAGCCAAGAAGCGCGCCCGCAAGATCCAGTTCACGCGCGGTCGACCGAATCGGGTCCAACTCTACCGCGAGCTGATCGCAATCACCTGCGCGACCTT
GGCCTATCTGAAGCAGGCGAGCGAGCGATTGGCCATGGCGAGCACACCGGCCATCGCACTGTGGCAGCTCCAGGTCCATCACTATGAGCCGTTGGTCGAG
CGCATCATCAGACAGAGCGAGCGACGGGTGTTGGCCGACGAGCCGGTGCCTGCCGGCGAGAAGTTGGTCAGCCTGTTCGAACCACATGCAGATATCATCG
TCAAAGGCAGCCGCAATACCGAGTACGGCCACAAACTCAACCTGACCACTGGCAGGAGCGGCATGATCCTCGATCTGGTGATCGAAGCAGGCAATCCGGC
CGACAGCGAGCGGCTGCTGCCGATGCTGGAGCGCCACATCGCCTTCTACGGCAAAGCGCCGCGGCAAGCGGCGGCCGATGGCGGCTTCGCCACTCGCGAC
AACCTGGCCACAGCGAAGGCGTGGGGCGTCTCCGACATGGCCTTCCACAAGAAGGCCGGGCTCAGGATCGAGGACATGGTCAGAAGCAAGTGGGTCTATC
GCAAGCTACGCAACTTCCGCGCCGGCATCGAAGCCGGAATATCGTGCTTGAAGCGCGCTTACGGCTTGGCACGCTGTACCTGGCGTGGCCTCGATCACTT
CAAGACCTACGTCTGGTCCTCGGCCGTGGCCTACAATCTCGTCCTGTTCACACGCCTCAAACCGAACTGACATCACAGTATCGCCGCTGCCGTCGTGCCG
ATCAGTGACCGGGCTCCGTGGTGCGCGCCGCGACCGGCCCATGATCCCCATTTGTCAACACCGGCGCTCTTGATCCCTGTCCATGCCGTTCAACGGCTTC
ACTGGACGAGGTTAAGTGCTTGCAAAAGCTGCAAAATAGGCGCGTTTATGGACGGAAACTAGNGTTCAACGGCTTCACTGGACGAGGTTAAGTGCTTGCA
AAAGCTGCAAAATAGGCGCGTTTATGGACGGAAAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa1331470+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRQERTVQASIFDVFATHEIGHELKAMSQWLDEHCDLLGLVAGDLVRVGVKATGRQGLPAEAVLRCAILKQYRQLSYQELAFHLEDSASFRAFARLPWSW
SPQKSVLQRTISAILPETWESINRTLLSSAQQAKLEDGAVVRLDSTVTSALMHEPSDSSLLWDAVRVMVRLLKRADTLVGGAGSWRDHCRAAKKRARKIQ
FTRGRPNRVQLYRELIAITCATLAYLKQASERLAMASTPAIALWQLQVHHYEPLVERIIRQSERRVLADEPVPAGEKLVSLFEPHADIIVKGSRNTEYGH
KLNLTTGRSGMILDLVIEAGNPADSERLLPMLERHIAFYGKAPRQAAADGGFATRDNLATAKAWGVSDMAFHKKAGLRIEDMVRSKWVYRKLRNFRAGIE
AGISCLKRAYGLARCTWRGLDHFKTYVWSSAVAYNLVLFTRLKPN

 

Blast result :
Comments
ISMesp3 is 92% aa similar to ISRtr6.
References
1] ISfinder annotation (2016)
2] Porter,S.S., Chang,P.L., Conow,C.A., Dunham,J.P. and Friesen,M.L. (2013) Direct submission GenBank.