ISVa11
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio anguillarum | Vibrio anguillarum VIB43 (O1) |
DNA section
IS Length : 2376 bp
Ends
IR Length : 13/19
IRL : GTAAGCGCGTCATAAACCCCGCATTCTAATCACCTAGCCCGAATAATAAG
IRR : GTATCCGCCCCATGATCCCACGGGGCGATATTGTTAGTGTTGGAAGTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGATTTGAA | CAATATCGCC | 0 |
DNA sequence
GTAAGCGCGTCATAAACCCCGCATTCTAATCACCTAGCCCGAATAATAAGATCAAACCTCCAACCCAAAGGAGATTTGAAATGGCCAAACGACGCACTAA
CCAAGAATGGCGAACCCTGTTCGAACACTATGAATCCAGCCAACTATCACAACGATTATTCTGTGAACGTAACGGACTGAGCCTCTCCACTTTTTACGCT
AAGCGCCAACAGTTAAAGCACATCGAAAAACCGAACACGGTTGGCTTTGTTAAAGCAGAAGTCGTTGAAAAGACCACAAAGTATCAAGCCACTCACGTTG
TCGTTGCCAATATGACGCTGCTCGTCAATGATGTTGAACTGAGCATCCCACAAGGCACGCCAGCGACCTATCTCGCAGAGCTTATCGGTGCGCTGTCATG
AAACGTATGCTCAGTGCTCCCGAAATCTATCTCTATCGCGAAAGCGTCGATTTTAGAAAGTCCATCAACGGCCTCGCTGCGATTATCGAAAATGACACCG
ACTTGCCCTTGGGCAGCGGCGCACTGTTCCTGTTCACCAACAAACAGCGCGACAAAATCAAAGTGCTGTACTGGGATAAAACAGGCTTTGCTCTTTGGTA
CAAGCGCCTTGAAAAAGCCAAGTACAAGTGGCCATCAAAAGAGCAAAATGAGGTGTTTACCCTAACTCAATTCGAGCTTGACAGACTGCTTTCTGGCTTC
ACGATTATCGGCCATAAACCCGTTAGAATAAACGATTTTACAATGACTTAAGCGATAATATAGCCATATCCACCAAGCATTAACGGCATGATTTTAGTAT
AATCAATGCCATGAAAAAGACGCCAAATATCAACTCAGAAAGCCAAGATGTTGCCGAGCTACAAGCGATGGTGAAAGCGCTGTTGGCGTCAGAAACCCAA
TTGAAACAAGAGCGTCAATCGCTGCTTGAACAGCTCAAACTTGCCTTCGACCGTCAGTTCGCTAAACGCTCGGAGGCGTTAAAGCCTTACGATGAATCTC
AAGGTGATCTCTTCAACGAAGCGGAGTGTGAGGCCGCTAAGGAAGAAGAGGTTGAAGTTGTCACAACGACCATCACAAAGAAGAAACGTGGTAAACGCAA
ACCACTGCCAAAGACCTTGCCTCGTGAAGTTATCGAACTCGATTTAAACGACGATGAAAAGCAGTGCACTTGCTGTCAACATAACCTGCATAAAATCGGT
GAAGACCGTAGCGAGAAACTTGAGTTCACGCCAGCGGTACTAAAAGTGTTGGAATATGTTCGTCCTAAATATGCTTGCCGCCAATGCGAGCAAACAGAAG
ACAAAAACCACGTCGTTCAAAAGCCAGCGCCGCAAAGCATTATCCCGAAGAGCTTCGCCACAGAAAGCTTGTTGGCCAATATCATCCTCGGCAAATATCA
ATACGCGATGCCACTTTACCGCCAAGAATCCCTGTTTACCCAGTCGGGTATCGAACTCTCACGAACCACCATGGCAAGGTGGATTATCCAAGTCAGTGAG
AAGTTCGCTCCACTTTACGCGGCCTTAAAAACGCACCTACTTGAGCAAGTGGTGATTCAGGCGGATGAAACGCCGCTCAATGTCCTCAAAGAAGATAAAC
AGTGTTATATGTGGCTTTACTGCTCGGGCGCAGACTCGCCTGAAGCCGCCCTCCCTAATGTGAGAAATATCGTCTTGTACGACTATCAAAACAGTCGAGC
TAGGGCGTGCCCTGTTGCCTTCTTGGGGGATTACAGTGGTTATCTACAAACCGATGGCTATGGTGTTTATGATGGGCTTCATCTCGTCACCAATGTCGGT
TGCTTGGCGCATGCTCGGCGCAAGTTCATGGAGGCGAAAAAGCTGCAAGGCAAAGGCAAGTCAGGCAAAGCGGATAGTGCATTGGCTAAAATCCAGAAAC
TCTATGGAATAGAATCACGCTTAAAAGGTGCCTGTGCCGAAAAACGGAAAGCAGAGCGCCAAGAGCATGCTAAGCCGATACTGGATGAGCTTTATGAATG
GATGACAACTCAGAAAGTGCTTGAGTCTAGCCCGCTGGGTAAAGCGATAAAATACACGCTCGGTCAGTGGCCGAAGCTGAGCCGCTATATCGATGACGGT
CACTTATCGATAGACAATAATCGTGCTGAACGCGCAATAAAACCGCTGGTTATAGGCAGAAAGAACTGGCTCTTCTCGACCAATCCCAATGGAGCTGAAG
CGAGCGCGATGCTTTACAGTATCGTCGAGACAGCGAAAGCCAACGGCCTTATCCTTTACGACTACATGGTTAAGTGCATGAAAGAGCTAGCGAAATCTGA
GCCTGATATCGATGCACTCCTGCCTTGGAACTTCCAACACTAACAATATCGCCCCGTGGGATCATGGGGCGGATAC
CCAAGAATGGCGAACCCTGTTCGAACACTATGAATCCAGCCAACTATCACAACGATTATTCTGTGAACGTAACGGACTGAGCCTCTCCACTTTTTACGCT
AAGCGCCAACAGTTAAAGCACATCGAAAAACCGAACACGGTTGGCTTTGTTAAAGCAGAAGTCGTTGAAAAGACCACAAAGTATCAAGCCACTCACGTTG
TCGTTGCCAATATGACGCTGCTCGTCAATGATGTTGAACTGAGCATCCCACAAGGCACGCCAGCGACCTATCTCGCAGAGCTTATCGGTGCGCTGTCATG
AAACGTATGCTCAGTGCTCCCGAAATCTATCTCTATCGCGAAAGCGTCGATTTTAGAAAGTCCATCAACGGCCTCGCTGCGATTATCGAAAATGACACCG
ACTTGCCCTTGGGCAGCGGCGCACTGTTCCTGTTCACCAACAAACAGCGCGACAAAATCAAAGTGCTGTACTGGGATAAAACAGGCTTTGCTCTTTGGTA
CAAGCGCCTTGAAAAAGCCAAGTACAAGTGGCCATCAAAAGAGCAAAATGAGGTGTTTACCCTAACTCAATTCGAGCTTGACAGACTGCTTTCTGGCTTC
ACGATTATCGGCCATAAACCCGTTAGAATAAACGATTTTACAATGACTTAAGCGATAATATAGCCATATCCACCAAGCATTAACGGCATGATTTTAGTAT
AATCAATGCCATGAAAAAGACGCCAAATATCAACTCAGAAAGCCAAGATGTTGCCGAGCTACAAGCGATGGTGAAAGCGCTGTTGGCGTCAGAAACCCAA
TTGAAACAAGAGCGTCAATCGCTGCTTGAACAGCTCAAACTTGCCTTCGACCGTCAGTTCGCTAAACGCTCGGAGGCGTTAAAGCCTTACGATGAATCTC
AAGGTGATCTCTTCAACGAAGCGGAGTGTGAGGCCGCTAAGGAAGAAGAGGTTGAAGTTGTCACAACGACCATCACAAAGAAGAAACGTGGTAAACGCAA
ACCACTGCCAAAGACCTTGCCTCGTGAAGTTATCGAACTCGATTTAAACGACGATGAAAAGCAGTGCACTTGCTGTCAACATAACCTGCATAAAATCGGT
GAAGACCGTAGCGAGAAACTTGAGTTCACGCCAGCGGTACTAAAAGTGTTGGAATATGTTCGTCCTAAATATGCTTGCCGCCAATGCGAGCAAACAGAAG
ACAAAAACCACGTCGTTCAAAAGCCAGCGCCGCAAAGCATTATCCCGAAGAGCTTCGCCACAGAAAGCTTGTTGGCCAATATCATCCTCGGCAAATATCA
ATACGCGATGCCACTTTACCGCCAAGAATCCCTGTTTACCCAGTCGGGTATCGAACTCTCACGAACCACCATGGCAAGGTGGATTATCCAAGTCAGTGAG
AAGTTCGCTCCACTTTACGCGGCCTTAAAAACGCACCTACTTGAGCAAGTGGTGATTCAGGCGGATGAAACGCCGCTCAATGTCCTCAAAGAAGATAAAC
AGTGTTATATGTGGCTTTACTGCTCGGGCGCAGACTCGCCTGAAGCCGCCCTCCCTAATGTGAGAAATATCGTCTTGTACGACTATCAAAACAGTCGAGC
TAGGGCGTGCCCTGTTGCCTTCTTGGGGGATTACAGTGGTTATCTACAAACCGATGGCTATGGTGTTTATGATGGGCTTCATCTCGTCACCAATGTCGGT
TGCTTGGCGCATGCTCGGCGCAAGTTCATGGAGGCGAAAAAGCTGCAAGGCAAAGGCAAGTCAGGCAAAGCGGATAGTGCATTGGCTAAAATCCAGAAAC
TCTATGGAATAGAATCACGCTTAAAAGGTGCCTGTGCCGAAAAACGGAAAGCAGAGCGCCAAGAGCATGCTAAGCCGATACTGGATGAGCTTTATGAATG
GATGACAACTCAGAAAGTGCTTGAGTCTAGCCCGCTGGGTAAAGCGATAAAATACACGCTCGGTCAGTGGCCGAAGCTGAGCCGCTATATCGATGACGGT
CACTTATCGATAGACAATAATCGTGCTGAACGCGCAATAAAACCGCTGGTTATAGGCAGAAAGAACTGGCTCTTCTCGACCAATCCCAATGGAGCTGAAG
CGAGCGCGATGCTTTACAGTATCGTCGAGACAGCGAAAGCCAACGGCCTTATCCTTTACGACTACATGGTTAAGTGCATGAAAGAGCTAGCGAAATCTGA
GCCTGATATCGATGCACTCCTGCCTTGGAACTTCCAACACTAACAATATCGCCCCGTGGGATCATGGGGCGGATAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
321 bp | 106 aa | 81 | 401 | + | No |
AG : IS66 TnpA
ORF sequence :
MAKRRTNQEWRTLFEHYESSQLSQRLFCERNGLSLSTFYAKRQQLKHIEKPNTVGFVKAEVVEKTTKYQATHVVVANMTLLVNDVELSIPQGTPATYLAE
LIGALS
LIGALS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
354 bp | 117 aa | 398 | 751 | + | No |
AG : IS66 TnpB
ORF sequence :
MKRMLSAPEIYLYRESVDFRKSINGLAAIIENDTDLPLGSGALFLFTNKQRDKIKVLYWDKTGFALWYKRLEKAKYKWPSKEQNEVFTLTQFELDRLLSG
FTIIGHKPVRINDFTMT
FTIIGHKPVRINDFTMT
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1533 bp | 510 aa | 811 | 2343 | + | No |
Chemistry : DDE
ORF sequence :
MKKTPNINSESQDVAELQAMVKALLASETQLKQERQSLLEQLKLAFDRQFAKRSEALKPYDESQGDLFNEAECEAAKEEEVEVVTTTITKKKRGKRKPLP
KTLPREVIELDLNDDEKQCTCCQHNLHKIGEDRSEKLEFTPAVLKVLEYVRPKYACRQCEQTEDKNHVVQKPAPQSIIPKSFATESLLANIILGKYQYAM
PLYRQESLFTQSGIELSRTTMARWIIQVSEKFAPLYAALKTHLLEQVVIQADETPLNVLKEDKQCYMWLYCSGADSPEAALPNVRNIVLYDYQNSRARAC
PVAFLGDYSGYLQTDGYGVYDGLHLVTNVGCLAHARRKFMEAKKLQGKGKSGKADSALAKIQKLYGIESRLKGACAEKRKAERQEHAKPILDELYEWMTT
QKVLESSPLGKAIKYTLGQWPKLSRYIDDGHLSIDNNRAERAIKPLVIGRKNWLFSTNPNGAEASAMLYSIVETAKANGLILYDYMVKCMKELAKSEPDI
DALLPWNFQH
KTLPREVIELDLNDDEKQCTCCQHNLHKIGEDRSEKLEFTPAVLKVLEYVRPKYACRQCEQTEDKNHVVQKPAPQSIIPKSFATESLLANIILGKYQYAM
PLYRQESLFTQSGIELSRTTMARWIIQVSEKFAPLYAALKTHLLEQVVIQADETPLNVLKEDKQCYMWLYCSGADSPEAALPNVRNIVLYDYQNSRARAC
PVAFLGDYSGYLQTDGYGVYDGLHLVTNVGCLAHARRKFMEAKKLQGKGKSGKADSALAKIQKLYGIESRLKGACAEKRKAERQEHAKPILDELYEWMTT
QKVLESSPLGKAIKYTLGQWPKLSRYIDDGHLSIDNNRAERAIKPLVIGRKNWLFSTNPNGAEASAMLYSIVETAKANGLILYDYMVKCMKELAKSEPDI
DALLPWNFQH
Blast result :
Comments
ISVa11 is 87%(orfA), 99%(orfB) and 94%(orfC, the transposase) aa similar to ISVa5.
ISVa11 is 76% DNA identical to ISVa9 and 86% to ISVa5.
ISVa11 is 76% DNA identical to ISVa9 and 86% to ISVa5.
References
1] Holm K.O. (2016) Direct submisison to ISfinder
2] Frans I. (2013) PLoS One. Aug 6;8(8):e70477. doi: 10.1371
3] Grisez L. (1995) Appl Environ Microbiol. Dec; 61(12):4367-73
2] Frans I. (2013) PLoS One. Aug 6;8(8):e70477. doi: 10.1371
3] Grisez L. (1995) Appl Environ Microbiol. Dec; 61(12):4367-73