ISVa11

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Vibrio anguillarum
Vibrio anguillarum VIB43 (O1)
DNA section
IS Length : 2376 bp

Ends


IR Length : 13/19

IRL : GTAAGCGCGTCATAAACCCCGCATTCTAATCACCTAGCCCGAATAATAAG
IRR : GTATCCGCCCCATGATCCCACGGGGCGATATTGTTAGTGTTGGAAGTTCC

Insertion site


Left flankDirect repeatRight flankDR Length
GAGATTTGAACAATATCGCC0

DNA sequence

GTAAGCGCGTCATAAACCCCGCATTCTAATCACCTAGCCCGAATAATAAGATCAAACCTCCAACCCAAAGGAGATTTGAAATGGCCAAACGACGCACTAA
CCAAGAATGGCGAACCCTGTTCGAACACTATGAATCCAGCCAACTATCACAACGATTATTCTGTGAACGTAACGGACTGAGCCTCTCCACTTTTTACGCT
AAGCGCCAACAGTTAAAGCACATCGAAAAACCGAACACGGTTGGCTTTGTTAAAGCAGAAGTCGTTGAAAAGACCACAAAGTATCAAGCCACTCACGTTG
TCGTTGCCAATATGACGCTGCTCGTCAATGATGTTGAACTGAGCATCCCACAAGGCACGCCAGCGACCTATCTCGCAGAGCTTATCGGTGCGCTGTCATG
AAACGTATGCTCAGTGCTCCCGAAATCTATCTCTATCGCGAAAGCGTCGATTTTAGAAAGTCCATCAACGGCCTCGCTGCGATTATCGAAAATGACACCG
ACTTGCCCTTGGGCAGCGGCGCACTGTTCCTGTTCACCAACAAACAGCGCGACAAAATCAAAGTGCTGTACTGGGATAAAACAGGCTTTGCTCTTTGGTA
CAAGCGCCTTGAAAAAGCCAAGTACAAGTGGCCATCAAAAGAGCAAAATGAGGTGTTTACCCTAACTCAATTCGAGCTTGACAGACTGCTTTCTGGCTTC
ACGATTATCGGCCATAAACCCGTTAGAATAAACGATTTTACAATGACTTAAGCGATAATATAGCCATATCCACCAAGCATTAACGGCATGATTTTAGTAT
AATCAATGCCATGAAAAAGACGCCAAATATCAACTCAGAAAGCCAAGATGTTGCCGAGCTACAAGCGATGGTGAAAGCGCTGTTGGCGTCAGAAACCCAA
TTGAAACAAGAGCGTCAATCGCTGCTTGAACAGCTCAAACTTGCCTTCGACCGTCAGTTCGCTAAACGCTCGGAGGCGTTAAAGCCTTACGATGAATCTC
AAGGTGATCTCTTCAACGAAGCGGAGTGTGAGGCCGCTAAGGAAGAAGAGGTTGAAGTTGTCACAACGACCATCACAAAGAAGAAACGTGGTAAACGCAA
ACCACTGCCAAAGACCTTGCCTCGTGAAGTTATCGAACTCGATTTAAACGACGATGAAAAGCAGTGCACTTGCTGTCAACATAACCTGCATAAAATCGGT
GAAGACCGTAGCGAGAAACTTGAGTTCACGCCAGCGGTACTAAAAGTGTTGGAATATGTTCGTCCTAAATATGCTTGCCGCCAATGCGAGCAAACAGAAG
ACAAAAACCACGTCGTTCAAAAGCCAGCGCCGCAAAGCATTATCCCGAAGAGCTTCGCCACAGAAAGCTTGTTGGCCAATATCATCCTCGGCAAATATCA
ATACGCGATGCCACTTTACCGCCAAGAATCCCTGTTTACCCAGTCGGGTATCGAACTCTCACGAACCACCATGGCAAGGTGGATTATCCAAGTCAGTGAG
AAGTTCGCTCCACTTTACGCGGCCTTAAAAACGCACCTACTTGAGCAAGTGGTGATTCAGGCGGATGAAACGCCGCTCAATGTCCTCAAAGAAGATAAAC
AGTGTTATATGTGGCTTTACTGCTCGGGCGCAGACTCGCCTGAAGCCGCCCTCCCTAATGTGAGAAATATCGTCTTGTACGACTATCAAAACAGTCGAGC
TAGGGCGTGCCCTGTTGCCTTCTTGGGGGATTACAGTGGTTATCTACAAACCGATGGCTATGGTGTTTATGATGGGCTTCATCTCGTCACCAATGTCGGT
TGCTTGGCGCATGCTCGGCGCAAGTTCATGGAGGCGAAAAAGCTGCAAGGCAAAGGCAAGTCAGGCAAAGCGGATAGTGCATTGGCTAAAATCCAGAAAC
TCTATGGAATAGAATCACGCTTAAAAGGTGCCTGTGCCGAAAAACGGAAAGCAGAGCGCCAAGAGCATGCTAAGCCGATACTGGATGAGCTTTATGAATG
GATGACAACTCAGAAAGTGCTTGAGTCTAGCCCGCTGGGTAAAGCGATAAAATACACGCTCGGTCAGTGGCCGAAGCTGAGCCGCTATATCGATGACGGT
CACTTATCGATAGACAATAATCGTGCTGAACGCGCAATAAAACCGCTGGTTATAGGCAGAAAGAACTGGCTCTTCTCGACCAATCCCAATGGAGCTGAAG
CGAGCGCGATGCTTTACAGTATCGTCGAGACAGCGAAAGCCAACGGCCTTATCCTTTACGACTACATGGTTAAGTGCATGAAAGAGCTAGCGAAATCTGA
GCCTGATATCGATGCACTCCTGCCTTGGAACTTCCAACACTAACAATATCGCCCCGTGGGATCATGGGGCGGATAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
321 bp106 aa81401+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MAKRRTNQEWRTLFEHYESSQLSQRLFCERNGLSLSTFYAKRQQLKHIEKPNTVGFVKAEVVEKTTKYQATHVVVANMTLLVNDVELSIPQGTPATYLAE
LIGALS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
354 bp117 aa398751+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MKRMLSAPEIYLYRESVDFRKSINGLAAIIENDTDLPLGSGALFLFTNKQRDKIKVLYWDKTGFALWYKRLEKAKYKWPSKEQNEVFTLTQFELDRLLSG
FTIIGHKPVRINDFTMT

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1533 bp510 aa8112343+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKTPNINSESQDVAELQAMVKALLASETQLKQERQSLLEQLKLAFDRQFAKRSEALKPYDESQGDLFNEAECEAAKEEEVEVVTTTITKKKRGKRKPLP
KTLPREVIELDLNDDEKQCTCCQHNLHKIGEDRSEKLEFTPAVLKVLEYVRPKYACRQCEQTEDKNHVVQKPAPQSIIPKSFATESLLANIILGKYQYAM
PLYRQESLFTQSGIELSRTTMARWIIQVSEKFAPLYAALKTHLLEQVVIQADETPLNVLKEDKQCYMWLYCSGADSPEAALPNVRNIVLYDYQNSRARAC
PVAFLGDYSGYLQTDGYGVYDGLHLVTNVGCLAHARRKFMEAKKLQGKGKSGKADSALAKIQKLYGIESRLKGACAEKRKAERQEHAKPILDELYEWMTT
QKVLESSPLGKAIKYTLGQWPKLSRYIDDGHLSIDNNRAERAIKPLVIGRKNWLFSTNPNGAEASAMLYSIVETAKANGLILYDYMVKCMKELAKSEPDI
DALLPWNFQH

 

Blast result :
Comments
ISVa11 is 87%(orfA), 99%(orfB) and 94%(orfC, the transposase) aa similar to ISVa5.
ISVa11 is 76% DNA identical to ISVa9 and 86% to ISVa5.
References
1] Holm K.O. (2016) Direct submisison to ISfinder
2] Frans I. (2013) PLoS One. Aug 6;8(8):e70477. doi: 10.1371
3] Grisez L. (1995) Appl Environ Microbiol. Dec; 61(12):4367-73