ISNfl1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HQ291166 | ND | Nostoc flagelliforme | Nostoc flagelliforme Sunitezuoqi |
DNA section
IS Length : 2022 bp
Ends
IR Length : 30/32
IRL : CTGGAGTTTAGACTAGTTTCCGGTGCGAAACTTCAAACCTTTACAGCGAT
IRR : CTGGAGTTTAGACTAGTTCTCGGTGCGAAACTGCTGAACAAATCAGATAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCAGTAGCGCTAAAAAG | GTTTGATGTATAACTGCATC | 0 |
DNA sequence
CTGGAGTTTAGACTAGTTTCCGGTGCGAAACTTCAAACCTTTACAGCGATTGATATACATCAAATATAAGCGCATCCACCCAAAACTTGAGTAGGGTTTT
CATAGTACGTTTGAACTAAAAATGCCCCAGGCACTCAAGGATGCGATCGCGTTCCGTAAGCTGAAGCATCCTTGAGTGCGTTGTAGGCGATGAACCTCCG
GTGCTGTGGAGGCGATTGCGCGGAGCGCAGTGCTGGGGGCAATCGCCAGAAAAAAATTGACGAGGGCGATTTTCTTGTAATCAAGTAAGAGAGATAAAAA
TGATGACTGAATTTCAATGAAAAATAAATTTTTTTGAACTATTTTTGAGTAAATTAAAATGGTTAATCGTTCTGAAGTATGTTTTTGAGTAGTACTTTCT
TTGCAAGCTCACTTAAAAAGCGATGTTACGTCAAAAATATGAATGTGACAAAGAGTTTAGTATTCTGATTCAGTTAATAGGAGAGATGGATGATTCAATT
TATATAATAGATAAAGTCCTTTCGGATGAACATCTGTTTCGATTAATTGAGTCTGATTTATCAAAGCGTTATCAGAACACTACTAAAACTGGAAGGAAAT
CAACTCCGGTTGAAGTTGTATTACGAATGTTAGCCTTGAAGCACTTACGCGGTTTGAGCTACGAGCAAACAATTTCCAACGTAAATGAAAGTTTAATTCT
AAGGCAATTTTGTCGAATTTATTTTAATGCTCTTCCTAATAAAAGCACTTTGATTCGTTGGTCACATCAAATTCGTCAAGAAACCTTGTCACAATTTAAT
CAACGTCTGACTCAAGTTGCGACCCAATTACAAATAACTAAGGGTAGAAAGATGAGGACAGATGGTACAGTAGTCGCAACCAATATTCATTTTCCTTCTG
ATAACAGCTTGTTACTTGATGGAGTCAAAGTTATTAGTCGTTTTTTATTGCAGGCAAAAGAAATTAGTGTCGCCAATTCGATATTTATTAACTCAAGTCT
TTTTCGTAATCGTTATCGTACAGCTAGAAGAATTTCTAGAGAGATTGATGGTTTATCTAAAACGAGAAATCAATCTGGCCGTCAAAAAAGAGAAAAAGCC
TACTCCAAATTGATTGAAGTGACTCAAGCTAGTTGGAAACAGGCTCAAAAATTCAAGTCAATTATTGGTAATTTAAATTTACTACAGTTTCATCAGCTAC
TTCAAAGATTTGAAATTTTTCTCCCTCGTATATCACAAGTGATTGAACAAACTCAGAGACGAATTTTCAATTCGGAGAAAGTACCTGCTGCCGAAAAAAT
TGTCAGTATATTTTGAATCTCATACAGATATAATATGTCGAGGTAAAATCAATGTAGATGTGGAATTTGGACATAAAGTTTGGTTAGATGAAATTGACGG
TGGAATTGTCAGCAATTATCGAATTTTAAAGGGTAATCCTCATGATACTCAACAATTAATCCCAAGTCTTGACCAACATTTAGAAAATTTTGGTTCATCG
CCAAAAATAGTGACTACAGACAGAGGTGTTTACTCTCAAACAAACGAAAATTATGCTCAATTATTAGGAGTCAAAGAAGTCATCTTACCCAAGGGTGGTT
ATCGAAGTAAAGAACGAATCAAGCATGAAAGAAAAAGAAATTTTAAAAAAGCTCGTCGTTGGCATAATGGAGTAGAAGGACGTATCAGTTTTTTGAAACG
ATGTTTTGGCTTACAACGTTGTTTATATAGGGGAGAGTTAGGATTTTGTCGTTGGGTTGGCTGGGGAGTTATTGCTCATAATTTAACTATTATTAGTCGA
GGGACTCTCAAAAATAAAATAAATTATCATGTTTTTATTTGATTTTATTATCAATAAAATTTGAGTTTAATCAAATATTACACTATCAGGAATAGTAGCT
TAAATACTTGAAATGAGCTTTGCTCTCATAATATAGTTGGCACATGCAACTATTGATTATTAACAAAGTTTTATATCTGATTTGTTCAGCAGTTTCGCAC
CGAGAACTAGTCTAAACTCCAG
CATAGTACGTTTGAACTAAAAATGCCCCAGGCACTCAAGGATGCGATCGCGTTCCGTAAGCTGAAGCATCCTTGAGTGCGTTGTAGGCGATGAACCTCCG
GTGCTGTGGAGGCGATTGCGCGGAGCGCAGTGCTGGGGGCAATCGCCAGAAAAAAATTGACGAGGGCGATTTTCTTGTAATCAAGTAAGAGAGATAAAAA
TGATGACTGAATTTCAATGAAAAATAAATTTTTTTGAACTATTTTTGAGTAAATTAAAATGGTTAATCGTTCTGAAGTATGTTTTTGAGTAGTACTTTCT
TTGCAAGCTCACTTAAAAAGCGATGTTACGTCAAAAATATGAATGTGACAAAGAGTTTAGTATTCTGATTCAGTTAATAGGAGAGATGGATGATTCAATT
TATATAATAGATAAAGTCCTTTCGGATGAACATCTGTTTCGATTAATTGAGTCTGATTTATCAAAGCGTTATCAGAACACTACTAAAACTGGAAGGAAAT
CAACTCCGGTTGAAGTTGTATTACGAATGTTAGCCTTGAAGCACTTACGCGGTTTGAGCTACGAGCAAACAATTTCCAACGTAAATGAAAGTTTAATTCT
AAGGCAATTTTGTCGAATTTATTTTAATGCTCTTCCTAATAAAAGCACTTTGATTCGTTGGTCACATCAAATTCGTCAAGAAACCTTGTCACAATTTAAT
CAACGTCTGACTCAAGTTGCGACCCAATTACAAATAACTAAGGGTAGAAAGATGAGGACAGATGGTACAGTAGTCGCAACCAATATTCATTTTCCTTCTG
ATAACAGCTTGTTACTTGATGGAGTCAAAGTTATTAGTCGTTTTTTATTGCAGGCAAAAGAAATTAGTGTCGCCAATTCGATATTTATTAACTCAAGTCT
TTTTCGTAATCGTTATCGTACAGCTAGAAGAATTTCTAGAGAGATTGATGGTTTATCTAAAACGAGAAATCAATCTGGCCGTCAAAAAAGAGAAAAAGCC
TACTCCAAATTGATTGAAGTGACTCAAGCTAGTTGGAAACAGGCTCAAAAATTCAAGTCAATTATTGGTAATTTAAATTTACTACAGTTTCATCAGCTAC
TTCAAAGATTTGAAATTTTTCTCCCTCGTATATCACAAGTGATTGAACAAACTCAGAGACGAATTTTCAATTCGGAGAAAGTACCTGCTGCCGAAAAAAT
TGTCAGTATATTTTGAATCTCATACAGATATAATATGTCGAGGTAAAATCAATGTAGATGTGGAATTTGGACATAAAGTTTGGTTAGATGAAATTGACGG
TGGAATTGTCAGCAATTATCGAATTTTAAAGGGTAATCCTCATGATACTCAACAATTAATCCCAAGTCTTGACCAACATTTAGAAAATTTTGGTTCATCG
CCAAAAATAGTGACTACAGACAGAGGTGTTTACTCTCAAACAAACGAAAATTATGCTCAATTATTAGGAGTCAAAGAAGTCATCTTACCCAAGGGTGGTT
ATCGAAGTAAAGAACGAATCAAGCATGAAAGAAAAAGAAATTTTAAAAAAGCTCGTCGTTGGCATAATGGAGTAGAAGGACGTATCAGTTTTTTGAAACG
ATGTTTTGGCTTACAACGTTGTTTATATAGGGGAGAGTTAGGATTTTGTCGTTGGGTTGGCTGGGGAGTTATTGCTCATAATTTAACTATTATTAGTCGA
GGGACTCTCAAAAATAAAATAAATTATCATGTTTTTATTTGATTTTATTATCAATAAAATTTGAGTTTAATCAAATATTACACTATCAGGAATAGTAGCT
TAAATACTTGAAATGAGCTTTGCTCTCATAATATAGTTGGCACATGCAACTATTGATTATTAACAAAGTTTTATATCTGATTTGTTCAGCAGTTTCGCAC
CGAGAACTAGTCTAAACTCCAG
Recoding section
- Recoding by frameshift
- Frame +1
- Type transcriptional
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence : No
- Secondary structure : No-structure
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 423 | 1316 | + | No |
Description : First part of the transposase
ORF sequence :
MLRQKYECDKEFSILIQLIGEMDDSIYIIDKVLSDEHLFRLIESDLSKRYQNTTKTGRKSTPVEVVLRMLALKHLRGLSYEQTISNVNESLILRQFCRIY
FNALPNKSTLIRWSHQIRQETLSQFNQRLTQVATQLQITKGRKMRTDGTVVATNIHFPSDNSLLLDGVKVISRFLLQAKEISVANSIFINSSLFRNRYRT
ARRISREIDGLSKTRNQSGRQKREKAYSKLIEVTQASWKQAQKFKSIIGNLNLLQFHQLLQRFEIFLPRISQVIEQTQRRIFNSEKVPAAEKIVSIF
FNALPNKSTLIRWSHQIRQETLSQFNQRLTQVATQLQITKGRKMRTDGTVVATNIHFPSDNSLLLDGVKVISRFLLQAKEISVANSIFINSSLFRNRYRT
ARRISREIDGLSKTRNQSGRQKREKAYSKLIEVTQASWKQAQKFKSIIGNLNLLQFHQLLQRFEIFLPRISQVIEQTQRRIFNSEKVPAAEKIVSIF
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
600 bp | 199 aa | 1243 | 1842 | + | No |
Description : Second part of the transposase
ORF sequence :
LNKLRDEFSIRRKYLLPKKLSVYFESHTDIICRGKINVDVEFGHKVWLDEIDGGIVSNYRILKGNPHDTQQLIPSLDQHLENFGSSPKIVTTDRGVYSQT
NENYAQLLGVKEVILPKGGYRSKERIKHERKRNFKKARRWHNGVEGRISFLKRCFGLQRCLYRGELGFCRWVGWGVIAHNLTIISRGTLKNKINYHVFI
NENYAQLLGVKEVILPKGGYRSKERIKHERKRNFKKARRWHNGVEGRISFLKRCFGLQRCLYRGELGFCRWVGWGVIAHNLTIISRGTLKNKINYHVFI
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1420 bp | 473 aa | 423 | 1842 | + | Yes |
Chemistry : DDE
ORF sequence :
MLRQKYECDKEFSILIQLIGEMDDSIYIIDKVLSDEHLFRLIESDLSKRYQNTTKTGRKSTPVEVVLRMLALKHLRGLSYEQTISNVNESLILRQFCRIY
FNALPNKSTLIRWSHQIRQETLSQFNQRLTQVATQLQITKGRKMRTDGTVVATNIHFPSDNSLLLDGVKVISRFLLQAKEISVANSIFINSSLFRNRYRT
ARRISREIDGLSKTRNQSGRQKREKAYSKLIEVTQASWKQAQKFKSIIGNLNLLQFHQLLQRFEIFLPRISQVIEQTQRRIFNSEKVPAAEKKLSVYFES
HTDIICRGKINVDVEFGHKVWLDEIDGGIVSNYRILKGNPHDTQQLIPSLDQHLENFGSSPKIVTTDRGVYSQTNENYAQLLGVKEVILPKGGYRSKERI
KHERKRNFKKARRWHNGVEGRISFLKRCFGLQRCLYRGELGFCRWVGWGVIAHNLTIISRGTLKNKINYHVFI
FNALPNKSTLIRWSHQIRQETLSQFNQRLTQVATQLQITKGRKMRTDGTVVATNIHFPSDNSLLLDGVKVISRFLLQAKEISVANSIFINSSLFRNRYRT
ARRISREIDGLSKTRNQSGRQKREKAYSKLIEVTQASWKQAQKFKSIIGNLNLLQFHQLLQRFEIFLPRISQVIEQTQRRIFNSEKVPAAEKKLSVYFES
HTDIICRGKINVDVEFGHKVWLDEIDGGIVSNYRILKGNPHDTQQLIPSLDQHLENFGSSPKIVTTDRGVYSQTNENYAQLLGVKEVILPKGGYRSKERI
KHERKRNFKKARRWHNGVEGRISFLKRCFGLQRCLYRGELGFCRWVGWGVIAHNLTIISRGTLKNKINYHVFI
Blast result :
Comments
ISNfl1 is 53% aa similar to ISTco5.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible +1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible +1 frameshift.
References
1] ISfinder annotation (2016)
2] Gao,X., Liu,K. and Qiu,B.S. (2011) Acta Physiol. Plant. 33 (4), 1301-1318.
2] Gao,X., Liu,K. and Qiu,B.S. (2011) Acta Physiol. Plant. 33 (4), 1301-1318.