ISDph1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
APJX01000004 | ND | Desulfotignum phosphitoxidans | Desulfotignum phosphitoxidans DSM 13687 |
DNA section
IS Length : 1882 bp
Ends
IR Length : 14/18
IRL : GTGTGTGACCGAAAACTCAAAACCCCACGTTTTTCATGGGTATAATGGCT
IRR : GTGGCTGACCGGAAACCCCTATTTTAGGATTTTCCGAGGCCGATGCCTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTCCCAACTACC | TATATTA | GCAATGGCTTC | 7 |
DNA sequence
GTGTGTGACCGAAAACTCAAAACCCCACGTTTTTCATGGGTATAATGGCTAAAATTTGTTTGAAATCTTTACTTGAAATTGAATTACTTGTTGATTTTAA
CTGATTACTATGTTAATATAACCAATTAATAATTAAAGAGATTTTAAAAAAACTGAGAGTCATAGAAAGCAGTTCAAATTTCAACACCCCAACAAAACTT
CGAGGTTGTTTTAGCGTAAAATTTTGAACCTACAAATGACATTCGGGCAGACCCCTATCGACCAAATCAAACTTGACATGAGAGCCAGGGATGAAATTCC
CAAGCTACTTTTGGGGCTCCAGCATATCTATTGCGATCAAGAACTTCGAGAAAAAGTTTTTGTCATCCTCAAAAATGTGATTCCGGAAGACACCGACTCC
AAAAATGGACGTCCGGGAATGGACCTGTGGAAAATTCTTGTGATGGGCACCATACGGCTCAATTGCAATTGGGATTACGATAAACTCCGGGAGATGGTGA
ACAACCACAGAACATTGAGGCAGATGCTGGGTCATGGCATGATGGACGATGACATAACCTATCCGCTCCAGACCTTAAAAGATAATGTCAGGCTTCTGAC
ACCTGACATTCTTGATAAAATCAACACCCTGGTTGTACAAGAAGGTCATAAACTTCTGATGAAAAAAAAACTTCGGACGAAGAGGTGTTGATGGGACGGT
GTGATTCATTCGTTGTTGAAACCGATGTTCATTTTCCCACAGACATCAACCTGCTTTTTGATGCAGTCCGAAAAATGATTCAAATTGCCGCTATTATCAG
CCAGGGCATTGGAACGAGTATGTGGCGGCAATCAGCATATAATATCAAAAAATTTAAACGGCTGTATCGGATAGTTCAGCGATTGAAACATTCCACATCC
GCGGATGAAAAGAAAAAGGCCAAAAGAGCCCGGCAGATCATGGATGCACACAAAGCTTATATTGAACTTGCTGAAAAATACATTTCAAAAGCGGAATTGA
CCATTGAAATGACGGAGTCCTCCGATATTATGAATGAAGCCCGAGTGGAAGAGTTGCAAACATACATCAATTATGCGCTTTGGCAAATTGGCCTGATAAA
ACGCCGGGTTTTGCAGGATGAAAAGATCCCACATAAAGACAAGATTTTTTCAATTTTCGAACCCCATACAGAATGGATTTCAAAAGGCAAAGCCGGTGTT
CCCCAAGAATTGGGACTGCGGGTATGCATCCTGGAAGACCAGTATGGGTTTATCCTGCACCACCGGGTGATGGAGCAAGAAACCGATGATAAAGTGGCCG
TTGCAATGGTAACGTCGGCCCAAAACAAATTTTCTGGTCTCAAGGGATGCAGTTTTGATAAAGGGTTTTATACACCTGGTAACAAAAAGGACCTGAAGGA
TACATTGAGCATTTTGGTGCTCCCGAAAAAAGGCAGATGCAACAAGGCTGAATTTGAAGAAGAAACAGCAGACGATTTTATTCGTTTAAAAAGAAAACAT
TCAGCGGTGGAATCGGCCATAAACGGGTTGGAAAATCATGGTCTGGACAGATGCCCGGATCATGGCATTCAAGGATTTAAAAGATATGTAGGTCTGTCTG
TTCTGGCAAGAAATCTCCAGATTATGGGTCATCATATACAACAAAAAAGGCTGAAGCAGCTGCAACGGTCTGAACAGCGAAAAGCCGCGTAAAAAAAGGC
CGTCGCATCAAAAAGTAGCACGTCAAACACTACAGGTGTGTCCAAAAAATGGGAAAGTCGTTAAAAAACGACAAATATTGAAGCACTTTGCCAGGTTTGT
GATAGCAGGAAAAACATTAATTGGAAATTATGTCAGGCATCGGCCTCGGAAAATCCTAAAATAGGGGTTTCCGGTCAGCCAC
CTGATTACTATGTTAATATAACCAATTAATAATTAAAGAGATTTTAAAAAAACTGAGAGTCATAGAAAGCAGTTCAAATTTCAACACCCCAACAAAACTT
CGAGGTTGTTTTAGCGTAAAATTTTGAACCTACAAATGACATTCGGGCAGACCCCTATCGACCAAATCAAACTTGACATGAGAGCCAGGGATGAAATTCC
CAAGCTACTTTTGGGGCTCCAGCATATCTATTGCGATCAAGAACTTCGAGAAAAAGTTTTTGTCATCCTCAAAAATGTGATTCCGGAAGACACCGACTCC
AAAAATGGACGTCCGGGAATGGACCTGTGGAAAATTCTTGTGATGGGCACCATACGGCTCAATTGCAATTGGGATTACGATAAACTCCGGGAGATGGTGA
ACAACCACAGAACATTGAGGCAGATGCTGGGTCATGGCATGATGGACGATGACATAACCTATCCGCTCCAGACCTTAAAAGATAATGTCAGGCTTCTGAC
ACCTGACATTCTTGATAAAATCAACACCCTGGTTGTACAAGAAGGTCATAAACTTCTGATGAAAAAAAAACTTCGGACGAAGAGGTGTTGATGGGACGGT
GTGATTCATTCGTTGTTGAAACCGATGTTCATTTTCCCACAGACATCAACCTGCTTTTTGATGCAGTCCGAAAAATGATTCAAATTGCCGCTATTATCAG
CCAGGGCATTGGAACGAGTATGTGGCGGCAATCAGCATATAATATCAAAAAATTTAAACGGCTGTATCGGATAGTTCAGCGATTGAAACATTCCACATCC
GCGGATGAAAAGAAAAAGGCCAAAAGAGCCCGGCAGATCATGGATGCACACAAAGCTTATATTGAACTTGCTGAAAAATACATTTCAAAAGCGGAATTGA
CCATTGAAATGACGGAGTCCTCCGATATTATGAATGAAGCCCGAGTGGAAGAGTTGCAAACATACATCAATTATGCGCTTTGGCAAATTGGCCTGATAAA
ACGCCGGGTTTTGCAGGATGAAAAGATCCCACATAAAGACAAGATTTTTTCAATTTTCGAACCCCATACAGAATGGATTTCAAAAGGCAAAGCCGGTGTT
CCCCAAGAATTGGGACTGCGGGTATGCATCCTGGAAGACCAGTATGGGTTTATCCTGCACCACCGGGTGATGGAGCAAGAAACCGATGATAAAGTGGCCG
TTGCAATGGTAACGTCGGCCCAAAACAAATTTTCTGGTCTCAAGGGATGCAGTTTTGATAAAGGGTTTTATACACCTGGTAACAAAAAGGACCTGAAGGA
TACATTGAGCATTTTGGTGCTCCCGAAAAAAGGCAGATGCAACAAGGCTGAATTTGAAGAAGAAACAGCAGACGATTTTATTCGTTTAAAAAGAAAACAT
TCAGCGGTGGAATCGGCCATAAACGGGTTGGAAAATCATGGTCTGGACAGATGCCCGGATCATGGCATTCAAGGATTTAAAAGATATGTAGGTCTGTCTG
TTCTGGCAAGAAATCTCCAGATTATGGGTCATCATATACAACAAAAAAGGCTGAAGCAGCTGCAACGGTCTGAACAGCGAAAAGCCGCGTAAAAAAAGGC
CGTCGCATCAAAAAGTAGCACGTCAAACACTACAGGTGTGTCCAAAAAATGGGAAAGTCGTTAAAAAACGACAAATATTGAAGCACTTTGCCAGGTTTGT
GATAGCAGGAAAAACATTAATTGGAAATTATGTCAGGCATCGGCCTCGGAAAATCCTAAAATAGGGGTTTCCGGTCAGCCAC
Recoding section
- Recoding by frameshift
- Frame -1
- Type transcriptional
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence : No
- Secondary structure : No-structure
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
456 bp | 151 aa | 236 | 691 | + | No |
Description : First part of the transposase
ORF sequence :
MTFGQTPIDQIKLDMRARDEIPKLLLGLQHIYCDQELREKVFVILKNVIPEDTDSKNGRPGMDLWKILVMGTIRLNCNWDYDKLREMVNNHRTLRQMLGH
GMMDDDITYPLQTLKDNVRLLTPDILDKINTLVVQEGHKLLMKKKLRTKRC
GMMDDDITYPLQTLKDNVRLLTPDILDKINTLVVQEGHKLLMKKKLRTKRC
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1041 bp | 346 aa | 652 | 1692 | + | No |
Description : Second part of the transposase
ORF sequence :
TSDEKKTSDEEVLMGRCDSFVVETDVHFPTDINLLFDAVRKMIQIAAIISQGIGTSMWRQSAYNIKKFKRLYRIVQRLKHSTSADEKKKAKRARQIMDAH
KAYIELAEKYISKAELTIEMTESSDIMNEARVEELQTYINYALWQIGLIKRRVLQDEKIPHKDKIFSIFEPHTEWISKGKAGVPQELGLRVCILEDQYGF
ILHHRVMEQETDDKVAVAMVTSAQNKFSGLKGCSFDKGFYTPGNKKDLKDTLSILVLPKKGRCNKAEFEEETADDFIRLKRKHSAVESAINGLENHGLDR
CPDHGIQGFKRYVGLSVLARNLQIMGHHIQQKRLKQLQRSEQRKAA
KAYIELAEKYISKAELTIEMTESSDIMNEARVEELQTYINYALWQIGLIKRRVLQDEKIPHKDKIFSIFEPHTEWISKGKAGVPQELGLRVCILEDQYGF
ILHHRVMEQETDDKVAVAMVTSAQNKFSGLKGCSFDKGFYTPGNKKDLKDTLSILVLPKKGRCNKAEFEEETADDFIRLKRKHSAVESAINGLENHGLDR
CPDHGIQGFKRYVGLSVLARNLQIMGHHIQQKRLKQLQRSEQRKAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1457 bp | 484 aa | 236 | 1692 | + | Yes |
Chemistry : DDE
ORF sequence :
MTFGQTPIDQIKLDMRARDEIPKLLLGLQHIYCDQELREKVFVILKNVIPEDTDSKNGRPGMDLWKILVMGTIRLNCNWDYDKLREMVNNHRTLRQMLGH
GMMDDDITYPLQTLKDNVRLLTPDILDKINTLVVQEGHKLLMKKTSDEEVLMGRCDSFVVETDVHFPTDINLLFDAVRKMIQIAAIISQGIGTSMWRQSA
YNIKKFKRLYRIVQRLKHSTSADEKKKAKRARQIMDAHKAYIELAEKYISKAELTIEMTESSDIMNEARVEELQTYINYALWQIGLIKRRVLQDEKIPHK
DKIFSIFEPHTEWISKGKAGVPQELGLRVCILEDQYGFILHHRVMEQETDDKVAVAMVTSAQNKFSGLKGCSFDKGFYTPGNKKDLKDTLSILVLPKKGR
CNKAEFEEETADDFIRLKRKHSAVESAINGLENHGLDRCPDHGIQGFKRYVGLSVLARNLQIMGHHIQQKRLKQLQRSEQRKAA
GMMDDDITYPLQTLKDNVRLLTPDILDKINTLVVQEGHKLLMKKTSDEEVLMGRCDSFVVETDVHFPTDINLLFDAVRKMIQIAAIISQGIGTSMWRQSA
YNIKKFKRLYRIVQRLKHSTSADEKKKAKRARQIMDAHKAYIELAEKYISKAELTIEMTESSDIMNEARVEELQTYINYALWQIGLIKRRVLQDEKIPHK
DKIFSIFEPHTEWISKGKAGVPQELGLRVCILEDQYGFILHHRVMEQETDDKVAVAMVTSAQNKFSGLKGCSFDKGFYTPGNKKDLKDTLSILVLPKKGR
CNKAEFEEETADDFIRLKRKHSAVESAINGLENHGLDRCPDHGIQGFKRYVGLSVLARNLQIMGHHIQQKRLKQLQRSEQRKAA
Blast result :Comments : This ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
Comments
ISDph1 is 72% aa similar to ISDssp5.
References
1] ISfinder annotation (2016)
2] Poehlein,A., Daniel,R. and Simeonova,D.D. (2013) Genome Announc 1 (3), E00227-13.
2] Poehlein,A., Daniel,R. and Simeonova,D.D. (2013) Genome Announc 1 (3), E00227-13.