ISTca1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JXCB01000012 ND Tolypothrix campylonemoides
Tolypothrix campylonemoides VB511288
DNA section
IS Length : 2019 bp

Ends


IR Length : 30/31

IRL : CTGGACTTTAGACTAGTTCCCGGTGCGAAACCCGAAACCATTACAGAGAT
IRR : CTGGAGTTTAGACTAGTTCCCGGTGCGAAACTGTTGAACAAATCAGATGA

Insertion site


Left flankDirect repeatRight flankDR Length
ATGTTTTTTATAATGAATCAGGA3

DNA sequence

CTGGACTTTAGACTAGTTCCCGGTGCGAAACCCGAAACCATTACAGAGATTGATATACATTAAACCTTAAGAGCACACACCCGAAATTTCCGCATCTCGA
TTCTTGCACTTTTATGGTACAGATGAACTAAATAAGAGTGCGAGGCAATCAAAGATGCGAACACGAGTGCGTGCCCTGCTCCCGCATTGGCATGGAGTGC
CCGCCTTCGCAGCGATCGCCCTGCATTGAAATGAACTTTGAATTACATTTTTGTAAAACTAAATTGATTCTGATAAAGGAAAATTGTGAATATCAATGAA
AAATGAATTTTTCCGAATTATTTTCTCATAAATAATAACAGTGCATCGAAGAAAAGTATGTTCACAGAATATACAAGGTTGGTTTAAGGCTCAGGCAGGA
GTTGTGATTCGATGTTACGTAAAAAATATAAACCTGATAAAGAATTTGACATTTTGATTCAGTTAATCGGAGAGATGGATGATTCAATTTATGAAATAGA
TAAAATACTTTTTGATGACAAATTATTTAACTTGATAGAATCAGATTTATCAAAGCGTTATCCAAACACGACGAAAACTGGAAGAAATTCAACTCCAGTA
GAAGTCATCTTACGAATGCTAGCTCTAAAACACTTACGTTGCTTGAGCTATGAAAAGACAATTTTAAACGTGAACGAAAGTTTAATATTGAGGCAGTTTT
GTAGAATTTATTTTAATCCTCTTCCCGACAAAAGTACTTTAATTCGTTGGTCACATCAAATTAGTCAAGAGACTTTAGATAAATTTAATCAACGTCTGAC
TCAAATCGCGACTCAGTTACAAATAACTAAGGGTAGAAAGATAAGGACGGACGGTACAGTAGTCGCAACTAATATTCATTTTCCGTCTGATAACAGCTTG
TTAGTAGATGGAGTCAAAGTTATCAGTCGAATTTTGTCGCAAGCGAAAGTCATTATTTTCGCAAATTCAAAAACTATTAACTCAAGTGTTTTTCGGAATC
GTCATCGCACAGCTAGAAGAATCTCTAGACAAATTGATGGTTTGTCGAAAACTAGAAATCAATCTGGTCGTCAAAAACGAGAACAAGCTTACTCAAAATT
GATTCAAGTGGCACGTTTGTGCTTGAAACAAGCTCAAAAAGTCAAGATAATTCTTGGTAATTCAAACTCTCTAGATTCTCAAAAGCTACTTCAAAAACTT
GCCATTTTTCTCCCTCGTATAGAACAAGTGATTGAACAGGCATATCGGCGAGTTTTCAAACAAGAAAAAGTTCCGGCTAATGAAAAAATAGTCAGTATAT
TTGAATCTCATACAGATATCATATGTCGAGGTAAAATCAACGTAGATGTAGAGTTTGGGCATAAAATTTGGTTAGATGAGGTTGACGGTGGGATTATCAG
CAATTATCGAATTTTAAAGGGTAATCCTCACGATACCCAACAGTTAATTCCAAGTCTTAACCAACATATAGAAAATTTTGGTTCACCACCAAAAGTTGTG
ACTACAGATAGAGGTGTTTACTCTCAGACAAATGAAAACTACGCTGCTGTGTTAGGAGTTAAACAAGTCATCTTACCCAAAGGAGGTAATAGAAGTAAAG
AACGAATTAATCATGAAAGAAAGAGAAACTTTAAAAAAGCTCGTCGTTGGCACAACGGAGTTGAAGGACGTATAAGTTTTCTGAAACGATGCTTTGGTTT
ACAACGTTGCTTATACAGAGGAGAGTTAGGATTCTCGAGTTGGGTCGGCTGGGGAATTATCGCTCATAATTTAACTATTATCAGCAGGGGCATCATTAAA
AATAATATCAATTCTCACGCTTGTCCTTAATTGCTTAGTATCAATTTATCTACGATTATTGAAAAAATTAGCAGCACAAAATAACGAAATAAAATAGAAA
ATATTTGAATACCTATTTGTTATTATGCTATAGCTTTTACACGTAATTGTTGACTATTAATAAAGTTTTTCATCTGATTTGTTCAACAGTTTCGCACCGG
GAACTAGTCTAAACTCCAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1419 bp472 aa4121830+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLRKKYKPDKEFDILIQLIGEMDDSIYEIDKILFDDKLFNLIESDLSKRYPNTTKTGRNSTPVEVILRMLALKHLRCLSYEKTILNVNESLILRQFCRIY
FNPLPDKSTLIRWSHQISQETLDKFNQRLTQIATQLQITKGRKIRTDGTVVATNIHFPSDNSLLVDGVKVISRILSQAKVIIFANSKTINSSVFRNRHRT
ARRISRQIDGLSKTRNQSGRQKREQAYSKLIQVARLCLKQAQKVKIILGNSNSLDSQKLLQKLAIFLPRIEQVIEQAYRRVFKQEKVPANEKIVSIFESH
TDIICRGKINVDVEFGHKIWLDEVDGGIISNYRILKGNPHDTQQLIPSLNQHIENFGSPPKVVTTDRGVYSQTNENYAAVLGVKQVILPKGGNRSKERIN
HERKRNFKKARRWHNGVEGRISFLKRCFGLQRCLYRGELGFSSWVGWGIIAHNLTIISRGIIKNNINSHACP

 

Blast result :
Comments
ISTca1 is 53% aa similar to ISTco5.
References
1] ISfinder annotation (2016)
2] Das,S., Singh,D., Madduluri,M., Chandrababunaidu,M.M., Gupta,A., Adhikary,S.P. and Tripathy,S. (2015) Genome Announc 3 (2)