ISTca1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JXCB01000012 | ND | Tolypothrix campylonemoides | Tolypothrix campylonemoides VB511288 |
DNA section
IS Length : 2019 bp
Ends
IR Length : 30/31
IRL : CTGGACTTTAGACTAGTTCCCGGTGCGAAACCCGAAACCATTACAGAGAT
IRR : CTGGAGTTTAGACTAGTTCCCGGTGCGAAACTGTTGAACAAATCAGATGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGTTTTTTA | TAA | TGAATCAGGA | 3 |
DNA sequence
CTGGACTTTAGACTAGTTCCCGGTGCGAAACCCGAAACCATTACAGAGATTGATATACATTAAACCTTAAGAGCACACACCCGAAATTTCCGCATCTCGA
TTCTTGCACTTTTATGGTACAGATGAACTAAATAAGAGTGCGAGGCAATCAAAGATGCGAACACGAGTGCGTGCCCTGCTCCCGCATTGGCATGGAGTGC
CCGCCTTCGCAGCGATCGCCCTGCATTGAAATGAACTTTGAATTACATTTTTGTAAAACTAAATTGATTCTGATAAAGGAAAATTGTGAATATCAATGAA
AAATGAATTTTTCCGAATTATTTTCTCATAAATAATAACAGTGCATCGAAGAAAAGTATGTTCACAGAATATACAAGGTTGGTTTAAGGCTCAGGCAGGA
GTTGTGATTCGATGTTACGTAAAAAATATAAACCTGATAAAGAATTTGACATTTTGATTCAGTTAATCGGAGAGATGGATGATTCAATTTATGAAATAGA
TAAAATACTTTTTGATGACAAATTATTTAACTTGATAGAATCAGATTTATCAAAGCGTTATCCAAACACGACGAAAACTGGAAGAAATTCAACTCCAGTA
GAAGTCATCTTACGAATGCTAGCTCTAAAACACTTACGTTGCTTGAGCTATGAAAAGACAATTTTAAACGTGAACGAAAGTTTAATATTGAGGCAGTTTT
GTAGAATTTATTTTAATCCTCTTCCCGACAAAAGTACTTTAATTCGTTGGTCACATCAAATTAGTCAAGAGACTTTAGATAAATTTAATCAACGTCTGAC
TCAAATCGCGACTCAGTTACAAATAACTAAGGGTAGAAAGATAAGGACGGACGGTACAGTAGTCGCAACTAATATTCATTTTCCGTCTGATAACAGCTTG
TTAGTAGATGGAGTCAAAGTTATCAGTCGAATTTTGTCGCAAGCGAAAGTCATTATTTTCGCAAATTCAAAAACTATTAACTCAAGTGTTTTTCGGAATC
GTCATCGCACAGCTAGAAGAATCTCTAGACAAATTGATGGTTTGTCGAAAACTAGAAATCAATCTGGTCGTCAAAAACGAGAACAAGCTTACTCAAAATT
GATTCAAGTGGCACGTTTGTGCTTGAAACAAGCTCAAAAAGTCAAGATAATTCTTGGTAATTCAAACTCTCTAGATTCTCAAAAGCTACTTCAAAAACTT
GCCATTTTTCTCCCTCGTATAGAACAAGTGATTGAACAGGCATATCGGCGAGTTTTCAAACAAGAAAAAGTTCCGGCTAATGAAAAAATAGTCAGTATAT
TTGAATCTCATACAGATATCATATGTCGAGGTAAAATCAACGTAGATGTAGAGTTTGGGCATAAAATTTGGTTAGATGAGGTTGACGGTGGGATTATCAG
CAATTATCGAATTTTAAAGGGTAATCCTCACGATACCCAACAGTTAATTCCAAGTCTTAACCAACATATAGAAAATTTTGGTTCACCACCAAAAGTTGTG
ACTACAGATAGAGGTGTTTACTCTCAGACAAATGAAAACTACGCTGCTGTGTTAGGAGTTAAACAAGTCATCTTACCCAAAGGAGGTAATAGAAGTAAAG
AACGAATTAATCATGAAAGAAAGAGAAACTTTAAAAAAGCTCGTCGTTGGCACAACGGAGTTGAAGGACGTATAAGTTTTCTGAAACGATGCTTTGGTTT
ACAACGTTGCTTATACAGAGGAGAGTTAGGATTCTCGAGTTGGGTCGGCTGGGGAATTATCGCTCATAATTTAACTATTATCAGCAGGGGCATCATTAAA
AATAATATCAATTCTCACGCTTGTCCTTAATTGCTTAGTATCAATTTATCTACGATTATTGAAAAAATTAGCAGCACAAAATAACGAAATAAAATAGAAA
ATATTTGAATACCTATTTGTTATTATGCTATAGCTTTTACACGTAATTGTTGACTATTAATAAAGTTTTTCATCTGATTTGTTCAACAGTTTCGCACCGG
GAACTAGTCTAAACTCCAG
TTCTTGCACTTTTATGGTACAGATGAACTAAATAAGAGTGCGAGGCAATCAAAGATGCGAACACGAGTGCGTGCCCTGCTCCCGCATTGGCATGGAGTGC
CCGCCTTCGCAGCGATCGCCCTGCATTGAAATGAACTTTGAATTACATTTTTGTAAAACTAAATTGATTCTGATAAAGGAAAATTGTGAATATCAATGAA
AAATGAATTTTTCCGAATTATTTTCTCATAAATAATAACAGTGCATCGAAGAAAAGTATGTTCACAGAATATACAAGGTTGGTTTAAGGCTCAGGCAGGA
GTTGTGATTCGATGTTACGTAAAAAATATAAACCTGATAAAGAATTTGACATTTTGATTCAGTTAATCGGAGAGATGGATGATTCAATTTATGAAATAGA
TAAAATACTTTTTGATGACAAATTATTTAACTTGATAGAATCAGATTTATCAAAGCGTTATCCAAACACGACGAAAACTGGAAGAAATTCAACTCCAGTA
GAAGTCATCTTACGAATGCTAGCTCTAAAACACTTACGTTGCTTGAGCTATGAAAAGACAATTTTAAACGTGAACGAAAGTTTAATATTGAGGCAGTTTT
GTAGAATTTATTTTAATCCTCTTCCCGACAAAAGTACTTTAATTCGTTGGTCACATCAAATTAGTCAAGAGACTTTAGATAAATTTAATCAACGTCTGAC
TCAAATCGCGACTCAGTTACAAATAACTAAGGGTAGAAAGATAAGGACGGACGGTACAGTAGTCGCAACTAATATTCATTTTCCGTCTGATAACAGCTTG
TTAGTAGATGGAGTCAAAGTTATCAGTCGAATTTTGTCGCAAGCGAAAGTCATTATTTTCGCAAATTCAAAAACTATTAACTCAAGTGTTTTTCGGAATC
GTCATCGCACAGCTAGAAGAATCTCTAGACAAATTGATGGTTTGTCGAAAACTAGAAATCAATCTGGTCGTCAAAAACGAGAACAAGCTTACTCAAAATT
GATTCAAGTGGCACGTTTGTGCTTGAAACAAGCTCAAAAAGTCAAGATAATTCTTGGTAATTCAAACTCTCTAGATTCTCAAAAGCTACTTCAAAAACTT
GCCATTTTTCTCCCTCGTATAGAACAAGTGATTGAACAGGCATATCGGCGAGTTTTCAAACAAGAAAAAGTTCCGGCTAATGAAAAAATAGTCAGTATAT
TTGAATCTCATACAGATATCATATGTCGAGGTAAAATCAACGTAGATGTAGAGTTTGGGCATAAAATTTGGTTAGATGAGGTTGACGGTGGGATTATCAG
CAATTATCGAATTTTAAAGGGTAATCCTCACGATACCCAACAGTTAATTCCAAGTCTTAACCAACATATAGAAAATTTTGGTTCACCACCAAAAGTTGTG
ACTACAGATAGAGGTGTTTACTCTCAGACAAATGAAAACTACGCTGCTGTGTTAGGAGTTAAACAAGTCATCTTACCCAAAGGAGGTAATAGAAGTAAAG
AACGAATTAATCATGAAAGAAAGAGAAACTTTAAAAAAGCTCGTCGTTGGCACAACGGAGTTGAAGGACGTATAAGTTTTCTGAAACGATGCTTTGGTTT
ACAACGTTGCTTATACAGAGGAGAGTTAGGATTCTCGAGTTGGGTCGGCTGGGGAATTATCGCTCATAATTTAACTATTATCAGCAGGGGCATCATTAAA
AATAATATCAATTCTCACGCTTGTCCTTAATTGCTTAGTATCAATTTATCTACGATTATTGAAAAAATTAGCAGCACAAAATAACGAAATAAAATAGAAA
ATATTTGAATACCTATTTGTTATTATGCTATAGCTTTTACACGTAATTGTTGACTATTAATAAAGTTTTTCATCTGATTTGTTCAACAGTTTCGCACCGG
GAACTAGTCTAAACTCCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1419 bp | 472 aa | 412 | 1830 | + | No |
Chemistry : DDE
ORF sequence :
MLRKKYKPDKEFDILIQLIGEMDDSIYEIDKILFDDKLFNLIESDLSKRYPNTTKTGRNSTPVEVILRMLALKHLRCLSYEKTILNVNESLILRQFCRIY
FNPLPDKSTLIRWSHQISQETLDKFNQRLTQIATQLQITKGRKIRTDGTVVATNIHFPSDNSLLVDGVKVISRILSQAKVIIFANSKTINSSVFRNRHRT
ARRISRQIDGLSKTRNQSGRQKREQAYSKLIQVARLCLKQAQKVKIILGNSNSLDSQKLLQKLAIFLPRIEQVIEQAYRRVFKQEKVPANEKIVSIFESH
TDIICRGKINVDVEFGHKIWLDEVDGGIISNYRILKGNPHDTQQLIPSLNQHIENFGSPPKVVTTDRGVYSQTNENYAAVLGVKQVILPKGGNRSKERIN
HERKRNFKKARRWHNGVEGRISFLKRCFGLQRCLYRGELGFSSWVGWGIIAHNLTIISRGIIKNNINSHACP
FNPLPDKSTLIRWSHQISQETLDKFNQRLTQIATQLQITKGRKIRTDGTVVATNIHFPSDNSLLVDGVKVISRILSQAKVIIFANSKTINSSVFRNRHRT
ARRISRQIDGLSKTRNQSGRQKREQAYSKLIQVARLCLKQAQKVKIILGNSNSLDSQKLLQKLAIFLPRIEQVIEQAYRRVFKQEKVPANEKIVSIFESH
TDIICRGKINVDVEFGHKIWLDEVDGGIISNYRILKGNPHDTQQLIPSLNQHIENFGSPPKVVTTDRGVYSQTNENYAAVLGVKQVILPKGGNRSKERIN
HERKRNFKKARRWHNGVEGRISFLKRCFGLQRCLYRGELGFSSWVGWGIIAHNLTIISRGIIKNNINSHACP
Blast result :
Comments
ISTca1 is 53% aa similar to ISTco5.
References
1] ISfinder annotation (2016)
2] Das,S., Singh,D., Madduluri,M., Chandrababunaidu,M.M., Gupta,A., Adhikary,S.P. and Tripathy,S. (2015) Genome Announc 3 (2)
2] Das,S., Singh,D., Madduluri,M., Chandrababunaidu,M.M., Gupta,A., Adhikary,S.P. and Tripathy,S. (2015) Genome Announc 3 (2)