ISTni3
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003989 | ND | Thioalkalivibrio nitratireducens | Thioalkalivibrio nitratireducens DSM 14787 |
DNA section
IS Length : 1048 bp
Ends
IR Length : 25/26
IRL : CCTGATTAGCAACGAGAGTCCGCCAGGATCACTCTGTGAGCCACCACCGG
IRR : CCTGATTAGCAACGAGAGTCAGCCAGCCGCAGGGACTGCGCGGGCAGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGAGAAGGTGTTT | TCCCTGTT | TGAGCCGCACAC | 8 |
DNA sequence
CCTGATTAGCAACGAGAGTCCGCCAGGATCACTCTGTGAGCCACCACCGGGCGTACGCTGAGGCTACACGTCGAGCGGAGGGTGGCACCATGGCACAGAA
TCGGATCCAGTTTCAGGCTGGGATGTCGATGCCGGAGTTCCTTGCGCAGTACGGGACGGAGGCCCAGTGCGAAGCGGCGCTGGAGCGGGTCCGCTGGCCG
GATGGCTTTCGCTGTCCGCGCTGCGGCGGTGACGCGCACTGTGTCCTGCGCAGCAGCCCGCGCAAGGTGTTTCAGTGCAATGCCTGCCGGCATCAGGCCT
CGCTGATCGCCAGCACCGTGATGCAGGGGACGAAGCTGCCGCTGACCACATGGTTTCTGGCCATCTACCTGGTCAGCCAGGCTAAGACCGGGATCGCGTC
GTTGGCGCTGGAACGGCACTTGGGCGTCAGCTACCCCACCGCCTGGGCGCTGAAGCACAAGCTGATGCAGGCGATGACCGAGCGGGAAGAGCGCTACACG
CTCAGCGGCACCGTGCAACTGGACGACGCCTACCTGGGAGGTGAGCGGACCGGTGGCAAGGCCGGGCGAGGCTCGGAGAACAAGGTTCCGTTCGTGGCGG
CGGTGTCGCTGACCGACGCGGGCCGTCCCCTGCGGGTCAAGCTGACGCCGGTGGCGGGGTTCAGCTTCCAGGCCATCACCGAGTGGGCCCGCGCGTATCT
GACCCCGGGCAGCACGGTCCACTCCGATGGTCTCGCGTGTTTCAACGCGGTCACGATGGCCGGTTGCCGGCACCAACCGACGGTCGTGGCCGGGCGCAAA
CCCAAGGACCTGCCCGAATTCCACTGGGTCAACACAGTGCTCGGCAACCTGAAGACCAGCCTGAGCGGGAGTTACCATGCCTTTGCGTTCTCCAAGTATG
CCCCCCGCTACCTCGCGGCTTTCGCCTACCGGTTCAACCGGCGCTTTGATCTGGCCGCATTGCCGGGACGCCTCCTGGTTGCCGCGGCGCACTGCAGGCC
GCTGCCCGCGCAGTCCCTGCGGCTGGCTGACTCTCGTTGCTAATCAGG
TCGGATCCAGTTTCAGGCTGGGATGTCGATGCCGGAGTTCCTTGCGCAGTACGGGACGGAGGCCCAGTGCGAAGCGGCGCTGGAGCGGGTCCGCTGGCCG
GATGGCTTTCGCTGTCCGCGCTGCGGCGGTGACGCGCACTGTGTCCTGCGCAGCAGCCCGCGCAAGGTGTTTCAGTGCAATGCCTGCCGGCATCAGGCCT
CGCTGATCGCCAGCACCGTGATGCAGGGGACGAAGCTGCCGCTGACCACATGGTTTCTGGCCATCTACCTGGTCAGCCAGGCTAAGACCGGGATCGCGTC
GTTGGCGCTGGAACGGCACTTGGGCGTCAGCTACCCCACCGCCTGGGCGCTGAAGCACAAGCTGATGCAGGCGATGACCGAGCGGGAAGAGCGCTACACG
CTCAGCGGCACCGTGCAACTGGACGACGCCTACCTGGGAGGTGAGCGGACCGGTGGCAAGGCCGGGCGAGGCTCGGAGAACAAGGTTCCGTTCGTGGCGG
CGGTGTCGCTGACCGACGCGGGCCGTCCCCTGCGGGTCAAGCTGACGCCGGTGGCGGGGTTCAGCTTCCAGGCCATCACCGAGTGGGCCCGCGCGTATCT
GACCCCGGGCAGCACGGTCCACTCCGATGGTCTCGCGTGTTTCAACGCGGTCACGATGGCCGGTTGCCGGCACCAACCGACGGTCGTGGCCGGGCGCAAA
CCCAAGGACCTGCCCGAATTCCACTGGGTCAACACAGTGCTCGGCAACCTGAAGACCAGCCTGAGCGGGAGTTACCATGCCTTTGCGTTCTCCAAGTATG
CCCCCCGCTACCTCGCGGCTTTCGCCTACCGGTTCAACCGGCGCTTTGATCTGGCCGCATTGCCGGGACGCCTCCTGGTTGCCGCGGCGCACTGCAGGCC
GCTGCCCGCGCAGTCCCTGCGGCTGGCTGACTCTCGTTGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 90 | 1043 | + | No |
Chemistry : DDE
ORF sequence :
MAQNRIQFQAGMSMPEFLAQYGTEAQCEAALERVRWPDGFRCPRCGGDAHCVLRSSPRKVFQCNACRHQASLIASTVMQGTKLPLTTWFLAIYLVSQAKT
GIASLALERHLGVSYPTAWALKHKLMQAMTEREERYTLSGTVQLDDAYLGGERTGGKAGRGSENKVPFVAAVSLTDAGRPLRVKLTPVAGFSFQAITEWA
RAYLTPGSTVHSDGLACFNAVTMAGCRHQPTVVAGRKPKDLPEFHWVNTVLGNLKTSLSGSYHAFAFSKYAPRYLAAFAYRFNRRFDLAALPGRLLVAAA
HCRPLPAQSLRLADSRC
GIASLALERHLGVSYPTAWALKHKLMQAMTEREERYTLSGTVQLDDAYLGGERTGGKAGRGSENKVPFVAAVSLTDAGRPLRVKLTPVAGFSFQAITEWA
RAYLTPGSTVHSDGLACFNAVTMAGCRHQPTVVAGRKPKDLPEFHWVNTVLGNLKTSLSGSYHAFAFSKYAPRYLAAFAYRFNRRFDLAALPGRLLVAAA
HCRPLPAQSLRLADSRC
Blast result :
Comments
ISTni3 is 73% aa similar to ISSysp1.
References
1] ISfinder annotation (2016)
2] Tikhonova,T.V., Pavlov,A.R., Beletsky,A.V., Mardanov,A.V., Sorokin,D.Y., Ravin,N.V. and Popov,V.O. (2015) Direct submission GenBank.
2] Tikhonova,T.V., Pavlov,A.R., Beletsky,A.V., Mardanov,A.V., Sorokin,D.Y., Ravin,N.V. and Popov,V.O. (2015) Direct submission GenBank.