ISTni3

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003989 ND Thioalkalivibrio nitratireducens
Thioalkalivibrio nitratireducens DSM 14787
DNA section
IS Length : 1048 bp

Ends


IR Length : 25/26

IRL : CCTGATTAGCAACGAGAGTCCGCCAGGATCACTCTGTGAGCCACCACCGG
IRR : CCTGATTAGCAACGAGAGTCAGCCAGCCGCAGGGACTGCGCGGGCAGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
AGGAGAAGGTGTTTTCCCTGTTTGAGCCGCACAC8

DNA sequence

CCTGATTAGCAACGAGAGTCCGCCAGGATCACTCTGTGAGCCACCACCGGGCGTACGCTGAGGCTACACGTCGAGCGGAGGGTGGCACCATGGCACAGAA
TCGGATCCAGTTTCAGGCTGGGATGTCGATGCCGGAGTTCCTTGCGCAGTACGGGACGGAGGCCCAGTGCGAAGCGGCGCTGGAGCGGGTCCGCTGGCCG
GATGGCTTTCGCTGTCCGCGCTGCGGCGGTGACGCGCACTGTGTCCTGCGCAGCAGCCCGCGCAAGGTGTTTCAGTGCAATGCCTGCCGGCATCAGGCCT
CGCTGATCGCCAGCACCGTGATGCAGGGGACGAAGCTGCCGCTGACCACATGGTTTCTGGCCATCTACCTGGTCAGCCAGGCTAAGACCGGGATCGCGTC
GTTGGCGCTGGAACGGCACTTGGGCGTCAGCTACCCCACCGCCTGGGCGCTGAAGCACAAGCTGATGCAGGCGATGACCGAGCGGGAAGAGCGCTACACG
CTCAGCGGCACCGTGCAACTGGACGACGCCTACCTGGGAGGTGAGCGGACCGGTGGCAAGGCCGGGCGAGGCTCGGAGAACAAGGTTCCGTTCGTGGCGG
CGGTGTCGCTGACCGACGCGGGCCGTCCCCTGCGGGTCAAGCTGACGCCGGTGGCGGGGTTCAGCTTCCAGGCCATCACCGAGTGGGCCCGCGCGTATCT
GACCCCGGGCAGCACGGTCCACTCCGATGGTCTCGCGTGTTTCAACGCGGTCACGATGGCCGGTTGCCGGCACCAACCGACGGTCGTGGCCGGGCGCAAA
CCCAAGGACCTGCCCGAATTCCACTGGGTCAACACAGTGCTCGGCAACCTGAAGACCAGCCTGAGCGGGAGTTACCATGCCTTTGCGTTCTCCAAGTATG
CCCCCCGCTACCTCGCGGCTTTCGCCTACCGGTTCAACCGGCGCTTTGATCTGGCCGCATTGCCGGGACGCCTCCTGGTTGCCGCGGCGCACTGCAGGCC
GCTGCCCGCGCAGTCCCTGCGGCTGGCTGACTCTCGTTGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa901043+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQNRIQFQAGMSMPEFLAQYGTEAQCEAALERVRWPDGFRCPRCGGDAHCVLRSSPRKVFQCNACRHQASLIASTVMQGTKLPLTTWFLAIYLVSQAKT
GIASLALERHLGVSYPTAWALKHKLMQAMTEREERYTLSGTVQLDDAYLGGERTGGKAGRGSENKVPFVAAVSLTDAGRPLRVKLTPVAGFSFQAITEWA
RAYLTPGSTVHSDGLACFNAVTMAGCRHQPTVVAGRKPKDLPEFHWVNTVLGNLKTSLSGSYHAFAFSKYAPRYLAAFAYRFNRRFDLAALPGRLLVAAA
HCRPLPAQSLRLADSRC

 

Blast result :
Comments
ISTni3 is 73% aa similar to ISSysp1.
References
1] ISfinder annotation (2016)
2] Tikhonova,T.V., Pavlov,A.R., Beletsky,A.V., Mardanov,A.V., Sorokin,D.Y., Ravin,N.V. and Popov,V.O. (2015) Direct submission GenBank.