ISDeba1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LADS01000058 | ND | Desulfobulbaceae bacterium | Desulfobulbaceae bacterium BRH_c16a |
DNA section
IS Length : 1807 bp
Ends
IR Length : 15/22
IRL : GTGCCTGGAAAGAAATCGAAAAACGTCCACAAATCAAAGCGATGCCATCA
IRR : GTGCCTGGCAGAAAACCCCCAATTTTCAAAAACTCGTACCAGCGCAGACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTGTAATAT | TAAATA | GATAAGCTTT | 6 |
DNA sequence
GTGCCTGGAAAGAAATCGAAAAACGTCCACAAATCAAAGCGATGCCATCATAACCCACAGACGAAGAAAATGAGAGTGTAGACAGCGACGGATGTTGAAT
AATAATGTAACATGTTGATTTATATGGTATATACTTTTGTCAAAACCATTTAGCAGGGCTTCTGAACGGATAAGACGACTGCAACCACCAAATCTTCGTC
GGATGAAAAACTCATGCGTAGAGTAATCGTACCACAAATGAAGTTGGGCGAACTGGCGATCGCCGACATAAAGCTGGACCCTAAATCACGCGATGATATC
CCGCAAATCCTGCGCGGACTCCAACACATATACACCACACCTGAACTGCGCGAGCAGATTTTTGCCATTCTGAAAGAGGTGCTGCCTGAGCATCAAATAG
AAGGAAAGACCGTCAAGGCCGACCCCAACAACGGTCGTCCCGGCATGACACAATGGCAGATTCTGGTGCTGGGGGTACTCAGATTGGGGCTCAACGCCGA
TTATGATCGTATCCAGGAGTTGGCCAACGAACATAAGACCCTTCGGCAAATGCTCGGTCACAGTAGTTGGGCGGACGAGAAATATTATAATCTGCAGACC
CTCAAAGATAATCTGCGGCTGTTTACTCCGGAAATCCTGGATCGGCTCAACCGGGTAATAGTTCGAGCGGGACACCGGGCATTAAAAAAAAAGCCGGAGG
AAGGAGTCGTAGGCCGTTGTGATTCTTTTGTGGTGGAAACTGACGTCCATTTCCCCACTGATATCAACTTGTTGTTGGACGCCATCCGCAAGGTCATCGA
AATCAGTGCTGAATTGTCCAGTACCCACAACCTGCCGGGGTGGCGGCAACACCACTACCACCAGCGTCAATTCAAAAGGCAATACCGCATAGTACAGCGG
CTCAAGCACTCCACTTCCAAAGACGAAAGCAAACAGCAGCGGAAAGAGCAGGATATTAAAGAGGCCCATCGTGTTTACCTGGACCTGGCGGAGGGTTATC
TGACACGAGCCGAACAAACCCGTCAACACGTCAGCCCGCACGATCCTCTCTTCGTGATCAGGCTCAGCGAATTGAATGACTTCATCAAACATGCCCGTCG
GCAGATCGACCAGATTGACCGGCGAGTGCTCCAGGGCGAACATATTCCTCACAATGAGAAGGTGTTTTCCCTATTCCAACCACATACCGAATGGATCAGC
AAAGGGAAGGCTGGCGTTCCTGTGGAGTTGGGACTGCGGGTGTGTATTATGGAAGACCGAGACCGCTTCATTCTGCATCACCGAGTGATGGTGAAGAGCA
CCGATGACCAGGTGGCCTTTGCCATGGTGGGCGAAACCAAGCAGAAGTTCCCCACGTTACGGGCGGTCAGCATGGACAAAGGTTTCTATAGCCCAGCCAA
TCAGGAAGTGCTGAAATCGCGTCTTGATTGTGTGGTGCTGCCCAAAAAAGGTAGGCTTTCGCAAGCCGACAAAGCGCGCGAAAGCGATCCTGAATTTGTT
AATCTGCGCAAACAACACTCGGCGGTGGCACGTAACATACAGCGTCTGGGTGCGGTGTTGCGTCAGCAGGAACAAGAGGCTGCTCAACGAAAACGCGGAT
CTTACAAGAAAGCTGCCTGAGAAGAGCAGGTTGCTCCGGCTGCAAAGTCGATGGAAGAGCTATGCCCGGCGAGGCTTGAAGATGAGAATTATTATCATTT
TTTAGGCTATGAGGACAAAAAAAATGCTGCCGGAAAGAAAGCCATCCACATTAACTGTGTCTGCGCTGGTACGAGTTTTTGAAAATTGGGGGTTTTCTGC
CAGGCAC
AATAATGTAACATGTTGATTTATATGGTATATACTTTTGTCAAAACCATTTAGCAGGGCTTCTGAACGGATAAGACGACTGCAACCACCAAATCTTCGTC
GGATGAAAAACTCATGCGTAGAGTAATCGTACCACAAATGAAGTTGGGCGAACTGGCGATCGCCGACATAAAGCTGGACCCTAAATCACGCGATGATATC
CCGCAAATCCTGCGCGGACTCCAACACATATACACCACACCTGAACTGCGCGAGCAGATTTTTGCCATTCTGAAAGAGGTGCTGCCTGAGCATCAAATAG
AAGGAAAGACCGTCAAGGCCGACCCCAACAACGGTCGTCCCGGCATGACACAATGGCAGATTCTGGTGCTGGGGGTACTCAGATTGGGGCTCAACGCCGA
TTATGATCGTATCCAGGAGTTGGCCAACGAACATAAGACCCTTCGGCAAATGCTCGGTCACAGTAGTTGGGCGGACGAGAAATATTATAATCTGCAGACC
CTCAAAGATAATCTGCGGCTGTTTACTCCGGAAATCCTGGATCGGCTCAACCGGGTAATAGTTCGAGCGGGACACCGGGCATTAAAAAAAAAGCCGGAGG
AAGGAGTCGTAGGCCGTTGTGATTCTTTTGTGGTGGAAACTGACGTCCATTTCCCCACTGATATCAACTTGTTGTTGGACGCCATCCGCAAGGTCATCGA
AATCAGTGCTGAATTGTCCAGTACCCACAACCTGCCGGGGTGGCGGCAACACCACTACCACCAGCGTCAATTCAAAAGGCAATACCGCATAGTACAGCGG
CTCAAGCACTCCACTTCCAAAGACGAAAGCAAACAGCAGCGGAAAGAGCAGGATATTAAAGAGGCCCATCGTGTTTACCTGGACCTGGCGGAGGGTTATC
TGACACGAGCCGAACAAACCCGTCAACACGTCAGCCCGCACGATCCTCTCTTCGTGATCAGGCTCAGCGAATTGAATGACTTCATCAAACATGCCCGTCG
GCAGATCGACCAGATTGACCGGCGAGTGCTCCAGGGCGAACATATTCCTCACAATGAGAAGGTGTTTTCCCTATTCCAACCACATACCGAATGGATCAGC
AAAGGGAAGGCTGGCGTTCCTGTGGAGTTGGGACTGCGGGTGTGTATTATGGAAGACCGAGACCGCTTCATTCTGCATCACCGAGTGATGGTGAAGAGCA
CCGATGACCAGGTGGCCTTTGCCATGGTGGGCGAAACCAAGCAGAAGTTCCCCACGTTACGGGCGGTCAGCATGGACAAAGGTTTCTATAGCCCAGCCAA
TCAGGAAGTGCTGAAATCGCGTCTTGATTGTGTGGTGCTGCCCAAAAAAGGTAGGCTTTCGCAAGCCGACAAAGCGCGCGAAAGCGATCCTGAATTTGTT
AATCTGCGCAAACAACACTCGGCGGTGGCACGTAACATACAGCGTCTGGGTGCGGTGTTGCGTCAGCAGGAACAAGAGGCTGCTCAACGAAAACGCGGAT
CTTACAAGAAAGCTGCCTGAGAAGAGCAGGTTGCTCCGGCTGCAAAGTCGATGGAAGAGCTATGCCCGGCGAGGCTTGAAGATGAGAATTATTATCATTT
TTTAGGCTATGAGGACAAAAAAAATGCTGCCGGAAAGAAAGCCATCCACATTAACTGTGTCTGCGCTGGTACGAGTTTTTGAAAATTGGGGGTTTTCTGC
CAGGCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1407 bp | 468 aa | 214 | 1620 | + | No |
Chemistry : DDE
ORF sequence :
MRRVIVPQMKLGELAIADIKLDPKSRDDIPQILRGLQHIYTTPELREQIFAILKEVLPEHQIEGKTVKADPNNGRPGMTQWQILVLGVLRLGLNADYDRI
QELANEHKTLRQMLGHSSWADEKYYNLQTLKDNLRLFTPEILDRLNRVIVRAGHRALKKKPEEGVVGRCDSFVVETDVHFPTDINLLLDAIRKVIEISAE
LSSTHNLPGWRQHHYHQRQFKRQYRIVQRLKHSTSKDESKQQRKEQDIKEAHRVYLDLAEGYLTRAEQTRQHVSPHDPLFVIRLSELNDFIKHARRQIDQ
IDRRVLQGEHIPHNEKVFSLFQPHTEWISKGKAGVPVELGLRVCIMEDRDRFILHHRVMVKSTDDQVAFAMVGETKQKFPTLRAVSMDKGFYSPANQEVL
KSRLDCVVLPKKGRLSQADKARESDPEFVNLRKQHSAVARNIQRLGAVLRQQEQEAAQRKRGSYKKAA
QELANEHKTLRQMLGHSSWADEKYYNLQTLKDNLRLFTPEILDRLNRVIVRAGHRALKKKPEEGVVGRCDSFVVETDVHFPTDINLLLDAIRKVIEISAE
LSSTHNLPGWRQHHYHQRQFKRQYRIVQRLKHSTSKDESKQQRKEQDIKEAHRVYLDLAEGYLTRAEQTRQHVSPHDPLFVIRLSELNDFIKHARRQIDQ
IDRRVLQGEHIPHNEKVFSLFQPHTEWISKGKAGVPVELGLRVCIMEDRDRFILHHRVMVKSTDDQVAFAMVGETKQKFPTLRAVSMDKGFYSPANQEVL
KSRLDCVVLPKKGRLSQADKARESDPEFVNLRKQHSAVARNIQRLGAVLRQQEQEAAQRKRGSYKKAA
Blast result :
Comments
ISDeba1 is 70% aa similar to ISSymo1.
References
1] ISfinder annotation (2016)
2] Bagnoud,A., Chourey,K., Hettich,R.L., de Bruijn,I., Andersson,A.F.,Leupin,O.X., Schwyn,B. and Bernier-Latmani,R. (2015) Direct submission GenBank.
2] Bagnoud,A., Chourey,K., Hettich,R.L., de Bruijn,I., Andersson,A.F.,Leupin,O.X., Schwyn,B. and Bernier-Latmani,R. (2015) Direct submission GenBank.