ISDeba1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LADS01000058 ND Desulfobulbaceae bacterium
Desulfobulbaceae bacterium BRH_c16a
DNA section
IS Length : 1807 bp

Ends


IR Length : 15/22

IRL : GTGCCTGGAAAGAAATCGAAAAACGTCCACAAATCAAAGCGATGCCATCA
IRR : GTGCCTGGCAGAAAACCCCCAATTTTCAAAAACTCGTACCAGCGCAGACA

Insertion site


Left flankDirect repeatRight flankDR Length
TATTGTAATATTAAATAGATAAGCTTT6

DNA sequence

GTGCCTGGAAAGAAATCGAAAAACGTCCACAAATCAAAGCGATGCCATCATAACCCACAGACGAAGAAAATGAGAGTGTAGACAGCGACGGATGTTGAAT
AATAATGTAACATGTTGATTTATATGGTATATACTTTTGTCAAAACCATTTAGCAGGGCTTCTGAACGGATAAGACGACTGCAACCACCAAATCTTCGTC
GGATGAAAAACTCATGCGTAGAGTAATCGTACCACAAATGAAGTTGGGCGAACTGGCGATCGCCGACATAAAGCTGGACCCTAAATCACGCGATGATATC
CCGCAAATCCTGCGCGGACTCCAACACATATACACCACACCTGAACTGCGCGAGCAGATTTTTGCCATTCTGAAAGAGGTGCTGCCTGAGCATCAAATAG
AAGGAAAGACCGTCAAGGCCGACCCCAACAACGGTCGTCCCGGCATGACACAATGGCAGATTCTGGTGCTGGGGGTACTCAGATTGGGGCTCAACGCCGA
TTATGATCGTATCCAGGAGTTGGCCAACGAACATAAGACCCTTCGGCAAATGCTCGGTCACAGTAGTTGGGCGGACGAGAAATATTATAATCTGCAGACC
CTCAAAGATAATCTGCGGCTGTTTACTCCGGAAATCCTGGATCGGCTCAACCGGGTAATAGTTCGAGCGGGACACCGGGCATTAAAAAAAAAGCCGGAGG
AAGGAGTCGTAGGCCGTTGTGATTCTTTTGTGGTGGAAACTGACGTCCATTTCCCCACTGATATCAACTTGTTGTTGGACGCCATCCGCAAGGTCATCGA
AATCAGTGCTGAATTGTCCAGTACCCACAACCTGCCGGGGTGGCGGCAACACCACTACCACCAGCGTCAATTCAAAAGGCAATACCGCATAGTACAGCGG
CTCAAGCACTCCACTTCCAAAGACGAAAGCAAACAGCAGCGGAAAGAGCAGGATATTAAAGAGGCCCATCGTGTTTACCTGGACCTGGCGGAGGGTTATC
TGACACGAGCCGAACAAACCCGTCAACACGTCAGCCCGCACGATCCTCTCTTCGTGATCAGGCTCAGCGAATTGAATGACTTCATCAAACATGCCCGTCG
GCAGATCGACCAGATTGACCGGCGAGTGCTCCAGGGCGAACATATTCCTCACAATGAGAAGGTGTTTTCCCTATTCCAACCACATACCGAATGGATCAGC
AAAGGGAAGGCTGGCGTTCCTGTGGAGTTGGGACTGCGGGTGTGTATTATGGAAGACCGAGACCGCTTCATTCTGCATCACCGAGTGATGGTGAAGAGCA
CCGATGACCAGGTGGCCTTTGCCATGGTGGGCGAAACCAAGCAGAAGTTCCCCACGTTACGGGCGGTCAGCATGGACAAAGGTTTCTATAGCCCAGCCAA
TCAGGAAGTGCTGAAATCGCGTCTTGATTGTGTGGTGCTGCCCAAAAAAGGTAGGCTTTCGCAAGCCGACAAAGCGCGCGAAAGCGATCCTGAATTTGTT
AATCTGCGCAAACAACACTCGGCGGTGGCACGTAACATACAGCGTCTGGGTGCGGTGTTGCGTCAGCAGGAACAAGAGGCTGCTCAACGAAAACGCGGAT
CTTACAAGAAAGCTGCCTGAGAAGAGCAGGTTGCTCCGGCTGCAAAGTCGATGGAAGAGCTATGCCCGGCGAGGCTTGAAGATGAGAATTATTATCATTT
TTTAGGCTATGAGGACAAAAAAAATGCTGCCGGAAAGAAAGCCATCCACATTAACTGTGTCTGCGCTGGTACGAGTTTTTGAAAATTGGGGGTTTTCTGC
CAGGCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1407 bp468 aa2141620+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRRVIVPQMKLGELAIADIKLDPKSRDDIPQILRGLQHIYTTPELREQIFAILKEVLPEHQIEGKTVKADPNNGRPGMTQWQILVLGVLRLGLNADYDRI
QELANEHKTLRQMLGHSSWADEKYYNLQTLKDNLRLFTPEILDRLNRVIVRAGHRALKKKPEEGVVGRCDSFVVETDVHFPTDINLLLDAIRKVIEISAE
LSSTHNLPGWRQHHYHQRQFKRQYRIVQRLKHSTSKDESKQQRKEQDIKEAHRVYLDLAEGYLTRAEQTRQHVSPHDPLFVIRLSELNDFIKHARRQIDQ
IDRRVLQGEHIPHNEKVFSLFQPHTEWISKGKAGVPVELGLRVCIMEDRDRFILHHRVMVKSTDDQVAFAMVGETKQKFPTLRAVSMDKGFYSPANQEVL
KSRLDCVVLPKKGRLSQADKARESDPEFVNLRKQHSAVARNIQRLGAVLRQQEQEAAQRKRGSYKKAA

 

Blast result :
Comments
ISDeba1 is 70% aa similar to ISSymo1.
References
1] ISfinder annotation (2016)
2] Bagnoud,A., Chourey,K., Hettich,R.L., de Bruijn,I., Andersson,A.F.,Leupin,O.X., Schwyn,B. and Bernier-Latmani,R. (2015) Direct submission GenBank.