ISNco1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP011451 ND Nitrosomonas communis
Nitrosomonas communis Nm2
DNA section
IS Length : 1873 bp

Ends


IR Length : 19/25

IRL : GTGTCGGCCCGAAAACCCTCTTCTTCTATAATAAACATAGGGTTGCGTCT
IRR : GTGCCAGTCCGAAAACCCCATTTTTTCACCAGTAATCTGCTTAATTTTTA

Insertion site


Left flankDirect repeatRight flankDR Length
GGATCAGGGACAACTAATTATGCGCAACTAT6

DNA sequence

GTGTCGGCCCGAAAACCCTCTTCTTCTATAATAAACATAGGGTTGCGTCTAATTCAAGAAAAGAAGATTGCTGAAAAATTGAGTGAAAGTGCCGTTATTA
GGTGGTTTTGGCGTATTTTCAAGCAAAACAATTTCAAACTTCGATTCAAATCAGCGAAAATATTGTCCTCAAAGACAAACTTCGTTCAAGTGGAAATCAA
ATGCGCGTAGTGCAAAATACCCAGATGGAATTAGGTGAAATTGATGTATCCCACATCAAATTTGACTTGAGATCACGAGATGATATTCCGAAGATACTGC
GCGGCTTACAGCACCTGTACCTGGATGAGGCATTGTGCCACAAAGTTTTTGCCTTACTGGAAAGTGAAATTGCCCCCAAGGTGGATAAGCACAATGGTCG
TCCTGGCATGACCCTATGGAGTGTCCTGGTATGTGGCGTATTACGGCTGGACTTAAATGCTGATTATGACCGTCTGCACGAATTGGTCAACCAGCACAGG
ACCTTGCGCGCAATGTTGGGGCATAGTCTGTACGATGAAGACAAGCAATATGCCTATCAAACCCTGGTGGATAATGTCAGTTTGTTCACGCCAGAATTGC
TGGACAGATTAAACCAGATCATCGTCGAGGGAGGGCATATCCTCATAAAAAAGGACGAAAGCGCCCTGCGTGGGCGGTGCGACTCCTTTGTGGTTGAAAC
CGATGTGCATTTTCCAACCGACATCAACTTATTGGGGGATGCCCTGCGCAAAGCGATTACGCTGACGGCGCGCTGGTGCGAAAGCCAGCACTTAAGCGAC
TGGCGGCAATATCGCTACAATCTACGTCAATTAAAACGACTTATGCGCAATGCACAGAGCAAGAAGCGCCGCAAAGCCGCAGACCAACAAAGCAACCTAC
AAACGATTCAAGCGTATCAGGCCTATATTGAGCAAGCCCAATGTTACGTGAAAAAAATTCAAACCACCTTAACCAAGCTGGCTACAACTGCTACGCGCGA
GTTGCTGCAAAAGATTGAAATTGAAGACTACCTCCAACATGCCAAGCGCCAAATAGACCAAATTGAGCGTCGTGTTATCAAAGGCGAAATCATTCCTCAC
CAGGAAAAAGTATTCTCCATTTTTGAACCCCACACCGAATGGGTCAGTAAAGGCAAAGCCGGTGTGCCTGTCGAGTTAGGCGTCAAAGTGTGCATTCTGG
AAGACCAGCATCAATTCATCTTGCACCATCACGTAATGGAAAGACAAACCGATGATCAAATTGCGGTAAACATGGTCACGCAAGCTAAAAAACGCTTTCC
CATACTCAATGCCTGCAGCTTCGATAAAGGTTTTCATTCACCTGCTAACCAGGCTGAATTAGCCCAACATCTTGAGCAGGTTACGCTGCCCAAAAAAGGC
AAACTATCCAAAGAGCGCAAAGCAATAGAACAAATGGAAGAATTTGTTAAAGCCCGTCGTGCGCACTCAGCAGTAGAGTCAGCAATCAATGCGCTGGAGG
TGCACGGACTAGACAAATGCCCAGATCATGGCATGGGTGGTTTTAAACGTTACGTTGCACTGGCTATTGTCGCCAGAAATATCCGCCGAATAGGTGATAT
TCTATGGCAGCAGGATGTGGAGCGTGAGCGCAAAGCTATAAAACGTCATTTAAAAGCACCAACAAGCAGCTTAAGCTCTCCCGCTAACGCAAAAAACCGC
CTGATTGCGAGCAATCAGTGGTGAGTGCTGGGTAGAAACCGTATTTTTCATGCCATGCCTCACAAAAATACAATCAGAGGCTTTTTTGGATGTATGGTTT
CGTTGCATTTTTACAAAGGCACTTAAAAATTAAGCAGATTACTGGTGAAAAAATGGGGTTTTCGGACTGGCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1524 bp501 aa2011724+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRVVQNTQMELGEIDVSHIKFDLRSRDDIPKILRGLQHLYLDEALCHKVFALLESEIAPKVDKHNGRPGMTLWSVLVCGVLRLDLNADYDRLHELVNQHR
TLRAMLGHSLYDEDKQYAYQTLVDNVSLFTPELLDRLNQIIVEGGHILIKKDESALRGRCDSFVVETDVHFPTDINLLGDALRKAITLTARWCESQHLSD
WRQYRYNLRQLKRLMRNAQSKKRRKAADQQSNLQTIQAYQAYIEQAQCYVKKIQTTLTKLATTATRELLQKIEIEDYLQHAKRQIDQIERRVIKGEIIPH
QEKVFSIFEPHTEWVSKGKAGVPVELGVKVCILEDQHQFILHHHVMERQTDDQIAVNMVTQAKKRFPILNACSFDKGFHSPANQAELAQHLEQVTLPKKG
KLSKERKAIEQMEEFVKARRAHSAVESAINALEVHGLDKCPDHGMGGFKRYVALAIVARNIRRIGDILWQQDVERERKAIKRHLKAPTSSLSSPANAKNR
LIASNQW

 

Blast result :
Comments
ISNco1 is 69% aa similar to ISPph5.
References
1] ISfinder annotation (2016)
2] Kozlowski,J.A., Kits,K.D. and Stein,L.Y. (2016) Genome Announc 4 (1).