ISNco1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP011451 | ND | Nitrosomonas communis | Nitrosomonas communis Nm2 |
DNA section
IS Length : 1873 bp
Ends
IR Length : 19/25
IRL : GTGTCGGCCCGAAAACCCTCTTCTTCTATAATAAACATAGGGTTGCGTCT
IRR : GTGCCAGTCCGAAAACCCCATTTTTTCACCAGTAATCTGCTTAATTTTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGATCAGGGACAAC | TAATTA | TGCGCAACTAT | 6 |
DNA sequence
GTGTCGGCCCGAAAACCCTCTTCTTCTATAATAAACATAGGGTTGCGTCTAATTCAAGAAAAGAAGATTGCTGAAAAATTGAGTGAAAGTGCCGTTATTA
GGTGGTTTTGGCGTATTTTCAAGCAAAACAATTTCAAACTTCGATTCAAATCAGCGAAAATATTGTCCTCAAAGACAAACTTCGTTCAAGTGGAAATCAA
ATGCGCGTAGTGCAAAATACCCAGATGGAATTAGGTGAAATTGATGTATCCCACATCAAATTTGACTTGAGATCACGAGATGATATTCCGAAGATACTGC
GCGGCTTACAGCACCTGTACCTGGATGAGGCATTGTGCCACAAAGTTTTTGCCTTACTGGAAAGTGAAATTGCCCCCAAGGTGGATAAGCACAATGGTCG
TCCTGGCATGACCCTATGGAGTGTCCTGGTATGTGGCGTATTACGGCTGGACTTAAATGCTGATTATGACCGTCTGCACGAATTGGTCAACCAGCACAGG
ACCTTGCGCGCAATGTTGGGGCATAGTCTGTACGATGAAGACAAGCAATATGCCTATCAAACCCTGGTGGATAATGTCAGTTTGTTCACGCCAGAATTGC
TGGACAGATTAAACCAGATCATCGTCGAGGGAGGGCATATCCTCATAAAAAAGGACGAAAGCGCCCTGCGTGGGCGGTGCGACTCCTTTGTGGTTGAAAC
CGATGTGCATTTTCCAACCGACATCAACTTATTGGGGGATGCCCTGCGCAAAGCGATTACGCTGACGGCGCGCTGGTGCGAAAGCCAGCACTTAAGCGAC
TGGCGGCAATATCGCTACAATCTACGTCAATTAAAACGACTTATGCGCAATGCACAGAGCAAGAAGCGCCGCAAAGCCGCAGACCAACAAAGCAACCTAC
AAACGATTCAAGCGTATCAGGCCTATATTGAGCAAGCCCAATGTTACGTGAAAAAAATTCAAACCACCTTAACCAAGCTGGCTACAACTGCTACGCGCGA
GTTGCTGCAAAAGATTGAAATTGAAGACTACCTCCAACATGCCAAGCGCCAAATAGACCAAATTGAGCGTCGTGTTATCAAAGGCGAAATCATTCCTCAC
CAGGAAAAAGTATTCTCCATTTTTGAACCCCACACCGAATGGGTCAGTAAAGGCAAAGCCGGTGTGCCTGTCGAGTTAGGCGTCAAAGTGTGCATTCTGG
AAGACCAGCATCAATTCATCTTGCACCATCACGTAATGGAAAGACAAACCGATGATCAAATTGCGGTAAACATGGTCACGCAAGCTAAAAAACGCTTTCC
CATACTCAATGCCTGCAGCTTCGATAAAGGTTTTCATTCACCTGCTAACCAGGCTGAATTAGCCCAACATCTTGAGCAGGTTACGCTGCCCAAAAAAGGC
AAACTATCCAAAGAGCGCAAAGCAATAGAACAAATGGAAGAATTTGTTAAAGCCCGTCGTGCGCACTCAGCAGTAGAGTCAGCAATCAATGCGCTGGAGG
TGCACGGACTAGACAAATGCCCAGATCATGGCATGGGTGGTTTTAAACGTTACGTTGCACTGGCTATTGTCGCCAGAAATATCCGCCGAATAGGTGATAT
TCTATGGCAGCAGGATGTGGAGCGTGAGCGCAAAGCTATAAAACGTCATTTAAAAGCACCAACAAGCAGCTTAAGCTCTCCCGCTAACGCAAAAAACCGC
CTGATTGCGAGCAATCAGTGGTGAGTGCTGGGTAGAAACCGTATTTTTCATGCCATGCCTCACAAAAATACAATCAGAGGCTTTTTTGGATGTATGGTTT
CGTTGCATTTTTACAAAGGCACTTAAAAATTAAGCAGATTACTGGTGAAAAAATGGGGTTTTCGGACTGGCAC
GGTGGTTTTGGCGTATTTTCAAGCAAAACAATTTCAAACTTCGATTCAAATCAGCGAAAATATTGTCCTCAAAGACAAACTTCGTTCAAGTGGAAATCAA
ATGCGCGTAGTGCAAAATACCCAGATGGAATTAGGTGAAATTGATGTATCCCACATCAAATTTGACTTGAGATCACGAGATGATATTCCGAAGATACTGC
GCGGCTTACAGCACCTGTACCTGGATGAGGCATTGTGCCACAAAGTTTTTGCCTTACTGGAAAGTGAAATTGCCCCCAAGGTGGATAAGCACAATGGTCG
TCCTGGCATGACCCTATGGAGTGTCCTGGTATGTGGCGTATTACGGCTGGACTTAAATGCTGATTATGACCGTCTGCACGAATTGGTCAACCAGCACAGG
ACCTTGCGCGCAATGTTGGGGCATAGTCTGTACGATGAAGACAAGCAATATGCCTATCAAACCCTGGTGGATAATGTCAGTTTGTTCACGCCAGAATTGC
TGGACAGATTAAACCAGATCATCGTCGAGGGAGGGCATATCCTCATAAAAAAGGACGAAAGCGCCCTGCGTGGGCGGTGCGACTCCTTTGTGGTTGAAAC
CGATGTGCATTTTCCAACCGACATCAACTTATTGGGGGATGCCCTGCGCAAAGCGATTACGCTGACGGCGCGCTGGTGCGAAAGCCAGCACTTAAGCGAC
TGGCGGCAATATCGCTACAATCTACGTCAATTAAAACGACTTATGCGCAATGCACAGAGCAAGAAGCGCCGCAAAGCCGCAGACCAACAAAGCAACCTAC
AAACGATTCAAGCGTATCAGGCCTATATTGAGCAAGCCCAATGTTACGTGAAAAAAATTCAAACCACCTTAACCAAGCTGGCTACAACTGCTACGCGCGA
GTTGCTGCAAAAGATTGAAATTGAAGACTACCTCCAACATGCCAAGCGCCAAATAGACCAAATTGAGCGTCGTGTTATCAAAGGCGAAATCATTCCTCAC
CAGGAAAAAGTATTCTCCATTTTTGAACCCCACACCGAATGGGTCAGTAAAGGCAAAGCCGGTGTGCCTGTCGAGTTAGGCGTCAAAGTGTGCATTCTGG
AAGACCAGCATCAATTCATCTTGCACCATCACGTAATGGAAAGACAAACCGATGATCAAATTGCGGTAAACATGGTCACGCAAGCTAAAAAACGCTTTCC
CATACTCAATGCCTGCAGCTTCGATAAAGGTTTTCATTCACCTGCTAACCAGGCTGAATTAGCCCAACATCTTGAGCAGGTTACGCTGCCCAAAAAAGGC
AAACTATCCAAAGAGCGCAAAGCAATAGAACAAATGGAAGAATTTGTTAAAGCCCGTCGTGCGCACTCAGCAGTAGAGTCAGCAATCAATGCGCTGGAGG
TGCACGGACTAGACAAATGCCCAGATCATGGCATGGGTGGTTTTAAACGTTACGTTGCACTGGCTATTGTCGCCAGAAATATCCGCCGAATAGGTGATAT
TCTATGGCAGCAGGATGTGGAGCGTGAGCGCAAAGCTATAAAACGTCATTTAAAAGCACCAACAAGCAGCTTAAGCTCTCCCGCTAACGCAAAAAACCGC
CTGATTGCGAGCAATCAGTGGTGAGTGCTGGGTAGAAACCGTATTTTTCATGCCATGCCTCACAAAAATACAATCAGAGGCTTTTTTGGATGTATGGTTT
CGTTGCATTTTTACAAAGGCACTTAAAAATTAAGCAGATTACTGGTGAAAAAATGGGGTTTTCGGACTGGCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1524 bp | 501 aa | 201 | 1724 | + | No |
Chemistry : DDE
ORF sequence :
MRVVQNTQMELGEIDVSHIKFDLRSRDDIPKILRGLQHLYLDEALCHKVFALLESEIAPKVDKHNGRPGMTLWSVLVCGVLRLDLNADYDRLHELVNQHR
TLRAMLGHSLYDEDKQYAYQTLVDNVSLFTPELLDRLNQIIVEGGHILIKKDESALRGRCDSFVVETDVHFPTDINLLGDALRKAITLTARWCESQHLSD
WRQYRYNLRQLKRLMRNAQSKKRRKAADQQSNLQTIQAYQAYIEQAQCYVKKIQTTLTKLATTATRELLQKIEIEDYLQHAKRQIDQIERRVIKGEIIPH
QEKVFSIFEPHTEWVSKGKAGVPVELGVKVCILEDQHQFILHHHVMERQTDDQIAVNMVTQAKKRFPILNACSFDKGFHSPANQAELAQHLEQVTLPKKG
KLSKERKAIEQMEEFVKARRAHSAVESAINALEVHGLDKCPDHGMGGFKRYVALAIVARNIRRIGDILWQQDVERERKAIKRHLKAPTSSLSSPANAKNR
LIASNQW
TLRAMLGHSLYDEDKQYAYQTLVDNVSLFTPELLDRLNQIIVEGGHILIKKDESALRGRCDSFVVETDVHFPTDINLLGDALRKAITLTARWCESQHLSD
WRQYRYNLRQLKRLMRNAQSKKRRKAADQQSNLQTIQAYQAYIEQAQCYVKKIQTTLTKLATTATRELLQKIEIEDYLQHAKRQIDQIERRVIKGEIIPH
QEKVFSIFEPHTEWVSKGKAGVPVELGVKVCILEDQHQFILHHHVMERQTDDQIAVNMVTQAKKRFPILNACSFDKGFHSPANQAELAQHLEQVTLPKKG
KLSKERKAIEQMEEFVKARRAHSAVESAINALEVHGLDKCPDHGMGGFKRYVALAIVARNIRRIGDILWQQDVERERKAIKRHLKAPTSSLSSPANAKNR
LIASNQW
Blast result :
Comments
ISNco1 is 69% aa similar to ISPph5.
References
1] ISfinder annotation (2016)
2] Kozlowski,J.A., Kits,K.D. and Stein,L.Y. (2016) Genome Announc 4 (1).
2] Kozlowski,J.A., Kits,K.D. and Stein,L.Y. (2016) Genome Announc 4 (1).