ISDssp5
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR695877 | ND | Desulfobacterium sp. | Desulfobacterium sp. |
DNA section
IS Length : 1857 bp
Ends
IR Length : 14/21
IRL : GTGTTTGACCGACAAATGGTAATCGATTGAATTTGAAGATAAATATTGAA
IRR : GTGTCTGAACGGAAAGTCATAGTTTTTTTAAAGTCAGCCGGATAGCTGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATTTCCGAATATATA | TATCTATCATGTCTTGA | 0 | |
TAATAAGTTATGGC | TATATA | AGAAACATAAATAT | 6 |
DNA sequence
GTGTTTGACCGACAAATGGTAATCGATTGAATTTGAAGATAAATATTGAATAAAAGTAAAACGAAGATTTTTCAGAAAGATGCATTTTATACTTGCATTC
CTGACTCATTAATGGTAGTTATTTACTTGAATTAACAGCTAATATAGCTTTTCTGCCCGGAAAGTAGAAAAGCAAAAATGAGCCAAAACTAAAAAATCTT
CGTGGAAATAATTTATGCGAAAAGTCATCGATTTGCAAATGGAATTTTGGAAAAAGGACATCGCCGACATCGAATTTGATCTTAAATCCCGGGATGAAAT
TCCCAAGCTGATGATAGGACTGCAATACATTTATAGCACACCGTCGTTACGTAAAAAGGTATTTAATATTCTGAAACGGATTGTGCCGAAAGCAAGTCAT
GAAATTGGAAGAACGGGCATGGACCTGTGGAAGGTACTGGTTTTGGGAACATTGCGTCTAAACTGCAACCGGGACTACGATAAAATCCATGAGATGGCCA
ACAATCATCATAAATTACGTCAGATGCCCGGGCACAGTGAAACTGATCTTGATTCAAACTATGCTTTGCAGACCATAAAGGATAATATTGTTTTACTGGC
TCCGCATATATTGGATGAGATTAATCAAATTGCTGTTAAAGCCGGGCACAGCATTATTGCGACAAAACAGGAATTAAGAGGCAGCTGCGATTCTTTTGTT
GTTGAAACCGATGTGCATTTTCCGACTGACACAAATCTGTTGTTTGATGCCATGCGCAAGATGATAATCCTGATTGCAATCATTTGTTGTGAGGCTGGCA
TTACCGACTGGCGTCAAAGCCATCATCATATAATAAAAATAAAGCGTCTGCTGCGAAGAATTCAAAGGCTCAAACATTCAACATCAAATAATGAATCTAA
AAAGGAAACCGGAAATAAATTAATTGTTGAACAGCACCGGAATTACATCGATGTCTGCCATGCCTTAGTATTCAAGGTCAAAGAGACAATCCGGATTTTA
CGGGAGATGCTGATATTATCAACGTCTCAAAATATCAGGCTGAGTAAGGTTGAAGAGTATATTGGTCATGCAGATCGGCAAATTGACCAGATTCTAAGAA
GAGCCGTTTTAGATGAAAAGATACCGCACGAAGAAAAAGTCTTTTCAATTTTTGAGCAGCACACCGAGTGGATCAGCAAAGGGAAAGCCGGCGTACCACA
GGAGTTGGGCTTAAAGGTTTGCATACTGAAAGATCAATATGGGTTTATTCTGCATCACCAGGTAATGGAACGACAGACCGATGATAAAGTAGCTGTTACC
ATGGCGAAGCAGGCCAAACAAAGATTTGAAAATCTTTCCGGATGCAGTTTTGACAAAGGTTTTTATACTCCTGACAACGGCAAGCAGCTGTCAAATATAT
TGGATTACGTCGTCTTACCCAAAAAGGGGCGGCTATCCGAAAAAGACAAACGAATAGAGAACTCGGAAGAATTTATTGAATCCAGGCATAAACATAGCGC
AGTAGAATCTTCCATTAATGCTTTGGAGAACCATGGATTGGATCGCTGTCCGGATCACGGCCTGCATGGATTTAAACGCTATGTTGCTTTATCCGTTTTA
GCCAGAAACATACAGATATTGGGCCATCTGATTCAGCAAAAAGATTTAAGCCGTCAGAGACGACGTAACGCGGCATAAAAGAAAGCATTTTATATAAAAA
ATGAGTAACTGACGGAGGGGTGCGTCCGGTTGTTGAGAAAATATCGCAAAAACTTGATTCACAATCGGATGCCAATGATTTGAATGGTAGTAATTTAATA
AACTGCCATCAGCTATCCGGCTGACTTTAAAAAAACTATGACTTTCCGTTCAGACAC
CTGACTCATTAATGGTAGTTATTTACTTGAATTAACAGCTAATATAGCTTTTCTGCCCGGAAAGTAGAAAAGCAAAAATGAGCCAAAACTAAAAAATCTT
CGTGGAAATAATTTATGCGAAAAGTCATCGATTTGCAAATGGAATTTTGGAAAAAGGACATCGCCGACATCGAATTTGATCTTAAATCCCGGGATGAAAT
TCCCAAGCTGATGATAGGACTGCAATACATTTATAGCACACCGTCGTTACGTAAAAAGGTATTTAATATTCTGAAACGGATTGTGCCGAAAGCAAGTCAT
GAAATTGGAAGAACGGGCATGGACCTGTGGAAGGTACTGGTTTTGGGAACATTGCGTCTAAACTGCAACCGGGACTACGATAAAATCCATGAGATGGCCA
ACAATCATCATAAATTACGTCAGATGCCCGGGCACAGTGAAACTGATCTTGATTCAAACTATGCTTTGCAGACCATAAAGGATAATATTGTTTTACTGGC
TCCGCATATATTGGATGAGATTAATCAAATTGCTGTTAAAGCCGGGCACAGCATTATTGCGACAAAACAGGAATTAAGAGGCAGCTGCGATTCTTTTGTT
GTTGAAACCGATGTGCATTTTCCGACTGACACAAATCTGTTGTTTGATGCCATGCGCAAGATGATAATCCTGATTGCAATCATTTGTTGTGAGGCTGGCA
TTACCGACTGGCGTCAAAGCCATCATCATATAATAAAAATAAAGCGTCTGCTGCGAAGAATTCAAAGGCTCAAACATTCAACATCAAATAATGAATCTAA
AAAGGAAACCGGAAATAAATTAATTGTTGAACAGCACCGGAATTACATCGATGTCTGCCATGCCTTAGTATTCAAGGTCAAAGAGACAATCCGGATTTTA
CGGGAGATGCTGATATTATCAACGTCTCAAAATATCAGGCTGAGTAAGGTTGAAGAGTATATTGGTCATGCAGATCGGCAAATTGACCAGATTCTAAGAA
GAGCCGTTTTAGATGAAAAGATACCGCACGAAGAAAAAGTCTTTTCAATTTTTGAGCAGCACACCGAGTGGATCAGCAAAGGGAAAGCCGGCGTACCACA
GGAGTTGGGCTTAAAGGTTTGCATACTGAAAGATCAATATGGGTTTATTCTGCATCACCAGGTAATGGAACGACAGACCGATGATAAAGTAGCTGTTACC
ATGGCGAAGCAGGCCAAACAAAGATTTGAAAATCTTTCCGGATGCAGTTTTGACAAAGGTTTTTATACTCCTGACAACGGCAAGCAGCTGTCAAATATAT
TGGATTACGTCGTCTTACCCAAAAAGGGGCGGCTATCCGAAAAAGACAAACGAATAGAGAACTCGGAAGAATTTATTGAATCCAGGCATAAACATAGCGC
AGTAGAATCTTCCATTAATGCTTTGGAGAACCATGGATTGGATCGCTGTCCGGATCACGGCCTGCATGGATTTAAACGCTATGTTGCTTTATCCGTTTTA
GCCAGAAACATACAGATATTGGGCCATCTGATTCAGCAAAAAGATTTAAGCCGTCAGAGACGACGTAACGCGGCATAAAAGAAAGCATTTTATATAAAAA
ATGAGTAACTGACGGAGGGGTGCGTCCGGTTGTTGAGAAAATATCGCAAAAACTTGATTCACAATCGGATGCCAATGATTTGAATGGTAGTAATTTAATA
AACTGCCATCAGCTATCCGGCTGACTTTAAAAAAACTATGACTTTCCGTTCAGACAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1464 bp | 487 aa | 215 | 1678 | + | No |
Chemistry : DDE
ORF sequence :
MRKVIDLQMEFWKKDIADIEFDLKSRDEIPKLMIGLQYIYSTPSLRKKVFNILKRIVPKASHEIGRTGMDLWKVLVLGTLRLNCNRDYDKIHEMANNHHK
LRQMPGHSETDLDSNYALQTIKDNIVLLAPHILDEINQIAVKAGHSIIATKQELRGSCDSFVVETDVHFPTDTNLLFDAMRKMIILIAIICCEAGITDWR
QSHHHIIKIKRLLRRIQRLKHSTSNNESKKETGNKLIVEQHRNYIDVCHALVFKVKETIRILREMLILSTSQNIRLSKVEEYIGHADRQIDQILRRAVLD
EKIPHEEKVFSIFEQHTEWISKGKAGVPQELGLKVCILKDQYGFILHHQVMERQTDDKVAVTMAKQAKQRFENLSGCSFDKGFYTPDNGKQLSNILDYVV
LPKKGRLSEKDKRIENSEEFIESRHKHSAVESSINALENHGLDRCPDHGLHGFKRYVALSVLARNIQILGHLIQQKDLSRQRRRNAA
LRQMPGHSETDLDSNYALQTIKDNIVLLAPHILDEINQIAVKAGHSIIATKQELRGSCDSFVVETDVHFPTDTNLLFDAMRKMIILIAIICCEAGITDWR
QSHHHIIKIKRLLRRIQRLKHSTSNNESKKETGNKLIVEQHRNYIDVCHALVFKVKETIRILREMLILSTSQNIRLSKVEEYIGHADRQIDQILRRAVLD
EKIPHEEKVFSIFEQHTEWISKGKAGVPQELGLKVCILKDQYGFILHHQVMERQTDDKVAVTMAKQAKQRFENLSGCSFDKGFYTPDNGKQLSNILDYVV
LPKKGRLSEKDKRIENSEEFIESRHKHSAVESSINALENHGLDRCPDHGLHGFKRYVALSVLARNIQILGHLIQQKDLSRQRRRNAA
Blast result :
Comments
ISDssp5 is 68% aa similar to ISPph5.
References
1] ISfinder annotation (2016)
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.