ISDssp5

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR695877 ND Desulfobacterium sp.
Desulfobacterium sp.
DNA section
IS Length : 1857 bp

Ends


IR Length : 14/21

IRL : GTGTTTGACCGACAAATGGTAATCGATTGAATTTGAAGATAAATATTGAA
IRR : GTGTCTGAACGGAAAGTCATAGTTTTTTTAAAGTCAGCCGGATAGCTGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CATTTCCGAATATATATATCTATCATGTCTTGA0
TAATAAGTTATGGCTATATAAGAAACATAAATAT6

DNA sequence

GTGTTTGACCGACAAATGGTAATCGATTGAATTTGAAGATAAATATTGAATAAAAGTAAAACGAAGATTTTTCAGAAAGATGCATTTTATACTTGCATTC
CTGACTCATTAATGGTAGTTATTTACTTGAATTAACAGCTAATATAGCTTTTCTGCCCGGAAAGTAGAAAAGCAAAAATGAGCCAAAACTAAAAAATCTT
CGTGGAAATAATTTATGCGAAAAGTCATCGATTTGCAAATGGAATTTTGGAAAAAGGACATCGCCGACATCGAATTTGATCTTAAATCCCGGGATGAAAT
TCCCAAGCTGATGATAGGACTGCAATACATTTATAGCACACCGTCGTTACGTAAAAAGGTATTTAATATTCTGAAACGGATTGTGCCGAAAGCAAGTCAT
GAAATTGGAAGAACGGGCATGGACCTGTGGAAGGTACTGGTTTTGGGAACATTGCGTCTAAACTGCAACCGGGACTACGATAAAATCCATGAGATGGCCA
ACAATCATCATAAATTACGTCAGATGCCCGGGCACAGTGAAACTGATCTTGATTCAAACTATGCTTTGCAGACCATAAAGGATAATATTGTTTTACTGGC
TCCGCATATATTGGATGAGATTAATCAAATTGCTGTTAAAGCCGGGCACAGCATTATTGCGACAAAACAGGAATTAAGAGGCAGCTGCGATTCTTTTGTT
GTTGAAACCGATGTGCATTTTCCGACTGACACAAATCTGTTGTTTGATGCCATGCGCAAGATGATAATCCTGATTGCAATCATTTGTTGTGAGGCTGGCA
TTACCGACTGGCGTCAAAGCCATCATCATATAATAAAAATAAAGCGTCTGCTGCGAAGAATTCAAAGGCTCAAACATTCAACATCAAATAATGAATCTAA
AAAGGAAACCGGAAATAAATTAATTGTTGAACAGCACCGGAATTACATCGATGTCTGCCATGCCTTAGTATTCAAGGTCAAAGAGACAATCCGGATTTTA
CGGGAGATGCTGATATTATCAACGTCTCAAAATATCAGGCTGAGTAAGGTTGAAGAGTATATTGGTCATGCAGATCGGCAAATTGACCAGATTCTAAGAA
GAGCCGTTTTAGATGAAAAGATACCGCACGAAGAAAAAGTCTTTTCAATTTTTGAGCAGCACACCGAGTGGATCAGCAAAGGGAAAGCCGGCGTACCACA
GGAGTTGGGCTTAAAGGTTTGCATACTGAAAGATCAATATGGGTTTATTCTGCATCACCAGGTAATGGAACGACAGACCGATGATAAAGTAGCTGTTACC
ATGGCGAAGCAGGCCAAACAAAGATTTGAAAATCTTTCCGGATGCAGTTTTGACAAAGGTTTTTATACTCCTGACAACGGCAAGCAGCTGTCAAATATAT
TGGATTACGTCGTCTTACCCAAAAAGGGGCGGCTATCCGAAAAAGACAAACGAATAGAGAACTCGGAAGAATTTATTGAATCCAGGCATAAACATAGCGC
AGTAGAATCTTCCATTAATGCTTTGGAGAACCATGGATTGGATCGCTGTCCGGATCACGGCCTGCATGGATTTAAACGCTATGTTGCTTTATCCGTTTTA
GCCAGAAACATACAGATATTGGGCCATCTGATTCAGCAAAAAGATTTAAGCCGTCAGAGACGACGTAACGCGGCATAAAAGAAAGCATTTTATATAAAAA
ATGAGTAACTGACGGAGGGGTGCGTCCGGTTGTTGAGAAAATATCGCAAAAACTTGATTCACAATCGGATGCCAATGATTTGAATGGTAGTAATTTAATA
AACTGCCATCAGCTATCCGGCTGACTTTAAAAAAACTATGACTTTCCGTTCAGACAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1464 bp487 aa2151678+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKVIDLQMEFWKKDIADIEFDLKSRDEIPKLMIGLQYIYSTPSLRKKVFNILKRIVPKASHEIGRTGMDLWKVLVLGTLRLNCNRDYDKIHEMANNHHK
LRQMPGHSETDLDSNYALQTIKDNIVLLAPHILDEINQIAVKAGHSIIATKQELRGSCDSFVVETDVHFPTDTNLLFDAMRKMIILIAIICCEAGITDWR
QSHHHIIKIKRLLRRIQRLKHSTSNNESKKETGNKLIVEQHRNYIDVCHALVFKVKETIRILREMLILSTSQNIRLSKVEEYIGHADRQIDQILRRAVLD
EKIPHEEKVFSIFEQHTEWISKGKAGVPQELGLKVCILKDQYGFILHHQVMERQTDDKVAVTMAKQAKQRFENLSGCSFDKGFYTPDNGKQLSNILDYVV
LPKKGRLSEKDKRIENSEEFIESRHKHSAVESSINALENHGLDRCPDHGLHGFKRYVALSVLARNIQILGHLIQQKDLSRQRRRNAA

 

Blast result :
Comments
ISDssp5 is 68% aa similar to ISPph5.
References
1] ISfinder annotation (2016)
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.