ISMags1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JPDT01000319 ND Candidatus Magnetomorum
Candidatus Magnetomorum sp. HK-1 HK1c0320
DNA section
IS Length : 1984 bp

Ends


IR Length : 14/15

IRL : GTGTCTGGCCGAAAACAAATAACTTTCTATAAAATTAATATGTTGTTGTC
IRR : GTGCCTGGCCGAAAAAGGCAAAATTGAATAAATCCGCCCTTATTCCGAAC

Insertion site


Left flankDirect repeatRight flankDR Length
CGAGTATGCCTAATTTCAATCAAAAA6

DNA sequence

GTGTCTGGCCGAAAACAAATAACTTTCTATAAAATTAATATGTTGTTGTCAAATTGATCCAATGAAGATTTAAGTAAATTACTACAAATTTTCTTGACAA
ATTAACTTTAATAGTTTACATAAGTTATTAATATAATTTTACATATGCTATTTTTTATGGTATAAAAATTGCAGTAGAACTTTTCTTCTTTTCAACAATC
TTCAAAGGAGCATCTTATGAGATTTGCATCTGAACAACAACCTAAATTGAACCAAATTCATATTAGCGATATAAAAATTGACCTTTCATCTCGTGATGAA
ATACCCAAAATTTTAATTGGTCTAAAGCATCTTTATGAAAACAAAGAGCTTAGAGATCAAATTTTTGAAATCCTTTATGATGCATTGCCTGAAAATGTAA
GCACTAAAAAGGGACGACGTGGAATGGATTTATGGAAGATCTTAGTTCTTGGCGTTGTGCGTCTTAACTGCAACTGGGACTATGATAAAGTTCAAGAAAT
TGCAAATAATCATATAACACTTAGACAAATGTTGGGTCATGGATTTAAAATAGGAACTAATGCAAGCGATGATGCTGAACGCTATGCTTTACAGACAATA
AAGGATAATGTTTCATTGTTAACACCAGAAATACTCGACCGAATAAATGAAGTTGTAGTCAAGGAAGGGCATAAGATTTTGAATAAAAAAGAAATTAAAA
CAGAAGAAAAAGATAATACGACTAAACAAAACAGTATTAAATTGAAAGGAAAATGCGATTCATACGTAGTAGAAACAGATGTTCATTTTCCGACAGATAT
AAATCTTTTGTTTGATTCTGTCAGAGTAATGATTAGGTTAATAGCAGCATTATGCTGCACTTTGGGAATTGATGAATGGCGACAGCATGTTTACCATATT
GGTAAAATAAAAAGATTTTATCGTGTGATAATGAAGTTAAAAAGATCAACATCAAAAGATGAGGATAAAAAAGCAGAAAGAGATCAAAAAATAAAAGATG
CATATGCAGATTATATAGAATTGGTTCAGAGCTATGTTGAAAGATGCATATTGACAATAAAAACTATTCGAGAAATGGGAACTGATTTTTTAATAAATGC
TCAGATAAAAAATATTGAAGAAAAGATAGAAAAGGCTGAGATATTTTTAGACCAAATAGAGAGAAGGGCAATAGAAGAAGAAAAAATACCACATAATGAA
AAAATATTTTCAATATTTGAAGAACATACTGAATGGATTAAAAAAGGTAAAGCTGGAGTATTAGTTGAGTTAGGAGTAAGAGTGAGCATACTTGAAGATC
AACATGGATTCATATTAACTCACACAGTAATGGAAAAGAAAACAGACGATAAGGTAGCAGTAGAAATAGTAAAAAATGCGAAAGAGAAGTACCCAGAATT
GACAAGTTGCAGCTTTGATAAAGGTTATTATACCCCTAACAATAGGAAAGAATTGGAGGAAATCCTTGAAAGTGTGATAATGCCCAAAAAAGGAAAGCGA
AGTAAAGCAGATGAAGAAAAAGAAAATTCCGAAGAATTTATTAGAGCGAGAAAAAAACATTCACGAGTAGAATCAGCAATAAATGCACTTGAAAATCATG
GATTGGATAAATGTCCTGACCATGGAATAAAAGGATTTAAACGATATGTCTCACTTGGAATTTTAGGAAGAAATATACAGCAATTAGGGCATATAATTCA
ACAGGAACAACAAAAAAAGGAAAAAAGAAAGAAAAAGGTTCAGGAGACTTGGCGAAATAAAAAAGCAGCGTAGCAAGGTAAGAATTAAAAAGGGGGAAAA
AATGAAAAAGATGGATAACTATGTAGAAGTTTATATTGATAGTGTTGATTTAGGTAGCGATTATATCGAGGCATCTCTTTTGAGGGTTGCTCATAAAATG
AATGGCATTCATTTTATATTTTCACGGAACGTCTGTTCGGAATAAGGGCGGATTTATTCAATTTTGCCTTTTTCGGCCAGGCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1557 bp518 aa2171773+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRFASEQQPKLNQIHISDIKIDLSSRDEIPKILIGLKHLYENKELRDQIFEILYDALPENVSTKKGRRGMDLWKILVLGVVRLNCNWDYDKVQEIANNHI
TLRQMLGHGFKIGTNASDDAERYALQTIKDNVSLLTPEILDRINEVVVKEGHKILNKKEIKTEEKDNTTKQNSIKLKGKCDSYVVETDVHFPTDINLLFD
SVRVMIRLIAALCCTLGIDEWRQHVYHIGKIKRFYRVIMKLKRSTSKDEDKKAERDQKIKDAYADYIELVQSYVERCILTIKTIREMGTDFLINAQIKNI
EEKIEKAEIFLDQIERRAIEEEKIPHNEKIFSIFEEHTEWIKKGKAGVLVELGVRVSILEDQHGFILTHTVMEKKTDDKVAVEIVKNAKEKYPELTSCSF
DKGYYTPNNRKELEEILESVIMPKKGKRSKADEEKENSEEFIRARKKHSRVESAINALENHGLDKCPDHGIKGFKRYVSLGILGRNIQQLGHIIQQEQQK
KEKRKKKVQETWRNKKAA

 

Blast result :
Comments
ISMags1 is 65% aa similar to ISPph5.
References
1] ISfinder annotation (2016)
2] Kolinko,S., Richter,M., Glockner,F.O., Brachmann,A. and Schuler,D. (2014) Direct submission GenBank.