ISGys1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP007142 ND Gynuella sunshinyii
Gynuella sunshinyii YC6258
DNA section
IS Length : 1646 bp

Ends


IR Length : 16

IRL : GTGCCCATCCATAAACACATAACTCCTTGATATTATTGACAAATATTTCT
IRR : GTGCCCATCCATAAACCGAGGTTTTTGATTTTTTTATGATGCAATAGGGT

Insertion site


Left flankDirect repeatRight flankDR Length
CCTTCTCAACTAATTAGGGGCTGAAA6

DNA sequence

GTGCCCATCCATAAACACATAACTCCTTGATATTATTGACAAATATTTCTGACAGGCATAAAAAATCCTTTTGGTATTTGATAGCGTTTAATCACCACAA
AAAAACACAACCAAACCAAAAGGATTCCACATGCGAGAAGCTCGTCATGCTCAGCTGAGTTTAACTGAATCATTCTCTGAACACGAGACCGGGCAGCAGC
TCAAACATCTCTCCAGGGTGCTTGATCAACATCCAGAGTTAGTCGATTGGGTACATGCGGACCTCACTCAACATCATCCACAGGCAACCGGCAGTAAAGG
GTTAACGTCGGAGAGTGTGCTTCGATGCCTGCTCATCAAACAGCTGTTCCAATTCAGTTATGAGCAGATGGCGTTCCATTTGTCCGATTCTGCCACTTAT
CGTGCCTTTGCCCGCTTGCCCATGGGAGTTTTTCCCAGTCGTTCGAGCTTGCAAAGCAGTATCCGTACAATTCAACCCATGACGCTGCAGACACTTAATA
CCAAACTGATTAGACACTGGCTGAACGAGGGCATTGTCAATATTGAACACTTGCGTATCGACAGTACCGTGATCAAGAGTCATATTGCTTCGCCCAGTGA
TAGTCAGTTATTGGATGATGGTATTCGTGTGCTCAGCCGACTACTGGCAAAAAGCAAAGACGACACCGGCATCCGGTTTCGGTTTACCGATCAGCGTAAG
GCGTCAAAATCCTTGGCGTTTCGCATCTTCAATGCCAAGCAGGCCGAGAAAGATCATCTGTATCCTCAGCTGTTGCGTATTGCAGAGCGAGTGTTGAAAC
AAGTTGATCGAGCCTTGAACCGAATCACCTCGGCACCCCAGTGGCGTGAGCGCCTCATTCACTCTCGTGATCTGCTGGTGCGCGTGATTCATCAAACCAC
GCGGCGTGTGATTGATCAGCAACAGGTTCCTGCATCCGAAAAGATCGTGAGTCTTTTCGAAGCGCATACCGACATCATTATCAAAGGTTTTCGAGATGTA
CAGTTTGGCCACAAAGTGAATTTATCATCGGATGCGTCAGGTTTTTTAACCTACTGCTGCATTGAGGAAGGCAATACCAGTGATAAGGAACTTTTCTTAC
CAGTATTGAGAGCGCATCAGAGCGATTATCAACGTCTGCCCAAGCGAACCATTGCGGATGGCGGCTATGCGAGCCAGGCGAATGTGCTCGAGGGCCGTCA
ACTGGGTGTTCAAGCGGTTGCCTTCCAAAAACCCGTGGGGTTAACGTTGAGCCAGATGGGATTAACACAAAAAACGCTCACAAAGTTGGCCAACTTTAGA
GCAGAGATTGAGGGTAATATCTCGGAACTCAAGCGTCGATTTGGTTGTTCGATGGCTCGGTGGAAAGGCAAAGAAGGCTTCCAGGCATTTGTCTGGTCAT
CGATACTGACCTACAACTTAATCCGGTTCGTGCGTTTGCAGCAATGACATGCCCCCAGGTCGACATAGAGCGATGATGCATCGACAGGATGTATCGTTGG
CATGCCTGAGAATCGACAAGATTTAAGTGTCTGGTCTAAAATTTAAACAATCAGCGGTGTAAGGAGAGATGAAGCAATAGGGCTACCTGTTATCGAACCC
TATTGCATCATAAAAAAATCAAAAACCTCGGTTTATGGATGGGCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1317 bp438 aa1311447+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MREARHAQLSLTESFSEHETGQQLKHLSRVLDQHPELVDWVHADLTQHHPQATGSKGLTSESVLRCLLIKQLFQFSYEQMAFHLSDSATYRAFARLPMGV
FPSRSSLQSSIRTIQPMTLQTLNTKLIRHWLNEGIVNIEHLRIDSTVIKSHIASPSDSQLLDDGIRVLSRLLAKSKDDTGIRFRFTDQRKASKSLAFRIF
NAKQAEKDHLYPQLLRIAERVLKQVDRALNRITSAPQWRERLIHSRDLLVRVIHQTTRRVIDQQQVPASEKIVSLFEAHTDIIIKGFRDVQFGHKVNLSS
DASGFLTYCCIEEGNTSDKELFLPVLRAHQSDYQRLPKRTIADGGYASQANVLEGRQLGVQAVAFQKPVGLTLSQMGLTQKTLTKLANFRAEIEGNISEL
KRRFGCSMARWKGKEGFQAFVWSSILTYNLIRFVRLQQ

 

Blast result :
Comments
ISGys1 is 74% aa similar to ISMaq5.
References
1] ISfinder annotation (2016)
2] Khan,H., Chung,E.J. and Chung,Y.R. (2014) Direct submission GenBank.