ISDesu1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP010802 | ND | Desulfuromonas sp. | Desulfuromonas sp. WTL |
DNA section
IS Length : 1694 bp
Ends
IR Length : 16/19
IRL : GCTTGTTTCCATCCGGAAAGTCTTAACTATCTAAAATTACTCACAAATCC
IRR : GCTAGTGTCCGTCCGGAAACCCCGGTTTTCTTACGGAACGAGGGCCACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCGCCTCTA | TTA | GGGGTCGCAG | 3 |
DNA sequence
GCTTGTTTCCATCCGGAAAGTCTTAACTATCTAAAATTACTCACAAATCCTTAGATTTTAGACTTGATTTTTATCTTTAGCCATGGCAGAATTAGCCTCT
AACATGTTGAATTTGTTCTGATTTCAATGTGGTCAGGAGGCCTCGTGAGGCAAAAAATCAATCGACAAATGTCTATCTTTGACCTACTGCATACCAGTGC
CATCGCCAAGGAGCTGCGCTGCATTTCCCAGATTTTGGATCACACCCCTGCGATTCTCGATGCCGTTCACCGCGACCTGCTCCAAGGGCGGCGTGCGGAT
ACCGGCCGCCTGGGGCTGAATGCCGATCAGGTGCTGCGCTGCGCCATTCTCAAGCAGTATCGTGAGCTCACCTATGAGGAGCTGGCCTTTTATTTGGAGG
ACTCGGCCGCCTTTCGCGCCTTTGCGCGACTGGAGATGGGTGTTTATCCCCGCAAGTCAATTCTTCAGGACAGTATCAAGAGCTTGAACGAATCGACCTG
GGAGAGTCTGCACCAGCTCATCCTCGGCTATGCTGCCGGGGCGAAGATCGAAACGGGGAAGAAGGTGCGCATCGACTCCACCGCCATCGAGACAAACATC
CATGCCCCGACCGACTCCTCCTTGCTTTTTGACGGCATCCGGATCATGACGCGTTGGATGACTGAAGGCCATCAGCTCAAGCCCCGCCCAGACTATCAGT
TCTCAGACCATCGACGGGTGGCCAAAAAACGGGTCCTGGCGATCCTCAATACCCGCAAGAAGGAAACCCGTGTGGCTGCTTATCGCGATCTGGTAGGGGT
GGCCCACAAGGTTTGCGGCTATGCTCGAGGGGCCATCCCCGTTCTGGGAAAATATCAGAACGCCAGCTTTCAAGACGGCTGCACGGCCCACCTTCTGGCG
CAAAAACTTGAGCGTGCCCTGCGCATTCTCGAAAAGGTCATCGACCAAACAGAGCGGCGCGTCTTCAAAGAAGAAAGCGTCCCGGCCTCGGAGAAAATCA
TCTCCTTCTTCGAGAGCCATAGCGACATCATCGTCAAGTCTCGCCGGGACACCGAGTACGGCCATAAGGTTTTCTTCACCGGCGGCGCCTCCAACTTGAT
CCTGGACTGCCTCATCCCCCGGGGCAATCCGGCAGACAGTGAGCAGTACTGCGAACTCCTGGATCGGCATGAGCAAACTTACGCCAGCATGCCGCGCCAA
GTCAGCGCCGATGGCGGGTTCGCATCCAAGAGCAACCTGGCTTTTGCCAAGGATCATCAGGTCAAGGACGCCGTATTCGCCAAGCGTCGTGGCCTGGGTG
TGCTCGATATGGCCAAGAGCAACTGGGTCTACAAGCGACTGAAAAACTTCCGTGCCGGCATTGAGGCCAACATTTCCGCGTTAAAGCGTCGCTTTGGCCT
GAGTCGCTGCAATTGGAGTGGGTGGCGCGGGTTCAGGCGCTATGTCTGGAGCAATGTCGTGTCGTATAACCTGCTGGTGTTGGCCCGAATCGAGCTGGCT
AAAGGTTAAACCCAGCATTCTCAGAGTGGAAAAATGACCCCAGAGGGAGCAGTGCACCCAAAAACTGCGAATCGAAGGCAGTTGGAGCAGGTTTCCCGAG
AATCGAAGTTTGAACTGACCGACCCGGATCTTCATACCGACGTCAAGTGGCCCTCGTTCCGTAAGAAAACCGGGGTTTCCGGACGGACACTAGC
AACATGTTGAATTTGTTCTGATTTCAATGTGGTCAGGAGGCCTCGTGAGGCAAAAAATCAATCGACAAATGTCTATCTTTGACCTACTGCATACCAGTGC
CATCGCCAAGGAGCTGCGCTGCATTTCCCAGATTTTGGATCACACCCCTGCGATTCTCGATGCCGTTCACCGCGACCTGCTCCAAGGGCGGCGTGCGGAT
ACCGGCCGCCTGGGGCTGAATGCCGATCAGGTGCTGCGCTGCGCCATTCTCAAGCAGTATCGTGAGCTCACCTATGAGGAGCTGGCCTTTTATTTGGAGG
ACTCGGCCGCCTTTCGCGCCTTTGCGCGACTGGAGATGGGTGTTTATCCCCGCAAGTCAATTCTTCAGGACAGTATCAAGAGCTTGAACGAATCGACCTG
GGAGAGTCTGCACCAGCTCATCCTCGGCTATGCTGCCGGGGCGAAGATCGAAACGGGGAAGAAGGTGCGCATCGACTCCACCGCCATCGAGACAAACATC
CATGCCCCGACCGACTCCTCCTTGCTTTTTGACGGCATCCGGATCATGACGCGTTGGATGACTGAAGGCCATCAGCTCAAGCCCCGCCCAGACTATCAGT
TCTCAGACCATCGACGGGTGGCCAAAAAACGGGTCCTGGCGATCCTCAATACCCGCAAGAAGGAAACCCGTGTGGCTGCTTATCGCGATCTGGTAGGGGT
GGCCCACAAGGTTTGCGGCTATGCTCGAGGGGCCATCCCCGTTCTGGGAAAATATCAGAACGCCAGCTTTCAAGACGGCTGCACGGCCCACCTTCTGGCG
CAAAAACTTGAGCGTGCCCTGCGCATTCTCGAAAAGGTCATCGACCAAACAGAGCGGCGCGTCTTCAAAGAAGAAAGCGTCCCGGCCTCGGAGAAAATCA
TCTCCTTCTTCGAGAGCCATAGCGACATCATCGTCAAGTCTCGCCGGGACACCGAGTACGGCCATAAGGTTTTCTTCACCGGCGGCGCCTCCAACTTGAT
CCTGGACTGCCTCATCCCCCGGGGCAATCCGGCAGACAGTGAGCAGTACTGCGAACTCCTGGATCGGCATGAGCAAACTTACGCCAGCATGCCGCGCCAA
GTCAGCGCCGATGGCGGGTTCGCATCCAAGAGCAACCTGGCTTTTGCCAAGGATCATCAGGTCAAGGACGCCGTATTCGCCAAGCGTCGTGGCCTGGGTG
TGCTCGATATGGCCAAGAGCAACTGGGTCTACAAGCGACTGAAAAACTTCCGTGCCGGCATTGAGGCCAACATTTCCGCGTTAAAGCGTCGCTTTGGCCT
GAGTCGCTGCAATTGGAGTGGGTGGCGCGGGTTCAGGCGCTATGTCTGGAGCAATGTCGTGTCGTATAACCTGCTGGTGTTGGCCCGAATCGAGCTGGCT
AAAGGTTAAACCCAGCATTCTCAGAGTGGAAAAATGACCCCAGAGGGAGCAGTGCACCCAAAAACTGCGAATCGAAGGCAGTTGGAGCAGGTTTCCCGAG
AATCGAAGTTTGAACTGACCGACCCGGATCTTCATACCGACGTCAAGTGGCCCTCGTTCCGTAAGAAAACCGGGGTTTCCGGACGGACACTAGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1365 bp | 454 aa | 145 | 1509 | + | No |
Chemistry : DDE
ORF sequence :
MRQKINRQMSIFDLLHTSAIAKELRCISQILDHTPAILDAVHRDLLQGRRADTGRLGLNADQVLRCAILKQYRELTYEELAFYLEDSAAFRAFARLEMGV
YPRKSILQDSIKSLNESTWESLHQLILGYAAGAKIETGKKVRIDSTAIETNIHAPTDSSLLFDGIRIMTRWMTEGHQLKPRPDYQFSDHRRVAKKRVLAI
LNTRKKETRVAAYRDLVGVAHKVCGYARGAIPVLGKYQNASFQDGCTAHLLAQKLERALRILEKVIDQTERRVFKEESVPASEKIISFFESHSDIIVKSR
RDTEYGHKVFFTGGASNLILDCLIPRGNPADSEQYCELLDRHEQTYASMPRQVSADGGFASKSNLAFAKDHQVKDAVFAKRRGLGVLDMAKSNWVYKRLK
NFRAGIEANISALKRRFGLSRCNWSGWRGFRRYVWSNVVSYNLLVLARIELAKG
YPRKSILQDSIKSLNESTWESLHQLILGYAAGAKIETGKKVRIDSTAIETNIHAPTDSSLLFDGIRIMTRWMTEGHQLKPRPDYQFSDHRRVAKKRVLAI
LNTRKKETRVAAYRDLVGVAHKVCGYARGAIPVLGKYQNASFQDGCTAHLLAQKLERALRILEKVIDQTERRVFKEESVPASEKIISFFESHSDIIVKSR
RDTEYGHKVFFTGGASNLILDCLIPRGNPADSEQYCELLDRHEQTYASMPRQVSADGGFASKSNLAFAKDHQVKDAVFAKRRGLGVLDMAKSNWVYKRLK
NFRAGIEANISALKRRFGLSRCNWSGWRGFRRYVWSNVVSYNLLVLARIELAKG
Blast result :
Comments
ISDesu1 is 68% aa similar to ISDth2.
References
1] ISfinder submission (2016)
2] Badalamenti,J.P., Summers,Z.M., Gralnick,J.A. and Bond,D.R. (2015) Direct submission GenBank.
2] Badalamenti,J.P., Summers,Z.M., Gralnick,J.A. and Bond,D.R. (2015) Direct submission GenBank.