ISDesu1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP010802 ND Desulfuromonas sp.
Desulfuromonas sp. WTL
DNA section
IS Length : 1694 bp

Ends


IR Length : 16/19

IRL : GCTTGTTTCCATCCGGAAAGTCTTAACTATCTAAAATTACTCACAAATCC
IRR : GCTAGTGTCCGTCCGGAAACCCCGGTTTTCTTACGGAACGAGGGCCACTT

Insertion site


Left flankDirect repeatRight flankDR Length
GTCGCCTCTATTAGGGGTCGCAG3

DNA sequence

GCTTGTTTCCATCCGGAAAGTCTTAACTATCTAAAATTACTCACAAATCCTTAGATTTTAGACTTGATTTTTATCTTTAGCCATGGCAGAATTAGCCTCT
AACATGTTGAATTTGTTCTGATTTCAATGTGGTCAGGAGGCCTCGTGAGGCAAAAAATCAATCGACAAATGTCTATCTTTGACCTACTGCATACCAGTGC
CATCGCCAAGGAGCTGCGCTGCATTTCCCAGATTTTGGATCACACCCCTGCGATTCTCGATGCCGTTCACCGCGACCTGCTCCAAGGGCGGCGTGCGGAT
ACCGGCCGCCTGGGGCTGAATGCCGATCAGGTGCTGCGCTGCGCCATTCTCAAGCAGTATCGTGAGCTCACCTATGAGGAGCTGGCCTTTTATTTGGAGG
ACTCGGCCGCCTTTCGCGCCTTTGCGCGACTGGAGATGGGTGTTTATCCCCGCAAGTCAATTCTTCAGGACAGTATCAAGAGCTTGAACGAATCGACCTG
GGAGAGTCTGCACCAGCTCATCCTCGGCTATGCTGCCGGGGCGAAGATCGAAACGGGGAAGAAGGTGCGCATCGACTCCACCGCCATCGAGACAAACATC
CATGCCCCGACCGACTCCTCCTTGCTTTTTGACGGCATCCGGATCATGACGCGTTGGATGACTGAAGGCCATCAGCTCAAGCCCCGCCCAGACTATCAGT
TCTCAGACCATCGACGGGTGGCCAAAAAACGGGTCCTGGCGATCCTCAATACCCGCAAGAAGGAAACCCGTGTGGCTGCTTATCGCGATCTGGTAGGGGT
GGCCCACAAGGTTTGCGGCTATGCTCGAGGGGCCATCCCCGTTCTGGGAAAATATCAGAACGCCAGCTTTCAAGACGGCTGCACGGCCCACCTTCTGGCG
CAAAAACTTGAGCGTGCCCTGCGCATTCTCGAAAAGGTCATCGACCAAACAGAGCGGCGCGTCTTCAAAGAAGAAAGCGTCCCGGCCTCGGAGAAAATCA
TCTCCTTCTTCGAGAGCCATAGCGACATCATCGTCAAGTCTCGCCGGGACACCGAGTACGGCCATAAGGTTTTCTTCACCGGCGGCGCCTCCAACTTGAT
CCTGGACTGCCTCATCCCCCGGGGCAATCCGGCAGACAGTGAGCAGTACTGCGAACTCCTGGATCGGCATGAGCAAACTTACGCCAGCATGCCGCGCCAA
GTCAGCGCCGATGGCGGGTTCGCATCCAAGAGCAACCTGGCTTTTGCCAAGGATCATCAGGTCAAGGACGCCGTATTCGCCAAGCGTCGTGGCCTGGGTG
TGCTCGATATGGCCAAGAGCAACTGGGTCTACAAGCGACTGAAAAACTTCCGTGCCGGCATTGAGGCCAACATTTCCGCGTTAAAGCGTCGCTTTGGCCT
GAGTCGCTGCAATTGGAGTGGGTGGCGCGGGTTCAGGCGCTATGTCTGGAGCAATGTCGTGTCGTATAACCTGCTGGTGTTGGCCCGAATCGAGCTGGCT
AAAGGTTAAACCCAGCATTCTCAGAGTGGAAAAATGACCCCAGAGGGAGCAGTGCACCCAAAAACTGCGAATCGAAGGCAGTTGGAGCAGGTTTCCCGAG
AATCGAAGTTTGAACTGACCGACCCGGATCTTCATACCGACGTCAAGTGGCCCTCGTTCCGTAAGAAAACCGGGGTTTCCGGACGGACACTAGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1365 bp454 aa1451509+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRQKINRQMSIFDLLHTSAIAKELRCISQILDHTPAILDAVHRDLLQGRRADTGRLGLNADQVLRCAILKQYRELTYEELAFYLEDSAAFRAFARLEMGV
YPRKSILQDSIKSLNESTWESLHQLILGYAAGAKIETGKKVRIDSTAIETNIHAPTDSSLLFDGIRIMTRWMTEGHQLKPRPDYQFSDHRRVAKKRVLAI
LNTRKKETRVAAYRDLVGVAHKVCGYARGAIPVLGKYQNASFQDGCTAHLLAQKLERALRILEKVIDQTERRVFKEESVPASEKIISFFESHSDIIVKSR
RDTEYGHKVFFTGGASNLILDCLIPRGNPADSEQYCELLDRHEQTYASMPRQVSADGGFASKSNLAFAKDHQVKDAVFAKRRGLGVLDMAKSNWVYKRLK
NFRAGIEANISALKRRFGLSRCNWSGWRGFRRYVWSNVVSYNLLVLARIELAKG

 

Blast result :
Comments
ISDesu1 is 68% aa similar to ISDth2.
References
1] ISfinder submission (2016)
2] Badalamenti,J.P., Summers,Z.M., Gralnick,J.A. and Bond,D.R. (2015) Direct submission GenBank.