ISChcr1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP012159 ND Chondromyces crocatus
Chondromyces crocatus strain Cm c5
DNA section
IS Length : 1842 bp

Ends


IR Length : 15/20

IRL : GTTCCCGTCCCGAAACGCGGCAAGCCTTGATCCGTAGGAGTGAGCGGGTT
IRR : GTTCCCGTCCCAGAAGTCAGTCTCCAGTAGAGAAGCGAGCTACCTACCGC

Insertion site


Left flankDirect repeatRight flankDR Length
ATGTTTTTGGTAGGTAAGAAAGGCGT6

DNA sequence

GTTCCCGTCCCGAAACGCGGCAAGCCTTGATCCGTAGGAGTGAGCGGGTTCCGACGTGACGTATCTCTCCGGGAGAGAGGCGACTCAGCGCGATTCCGGG
GGCGAATGCTTCTGCGAAATGCGAGGAACGAGGAGAGAAGAGCGGGAGAGCATCAGGAAGATAGCCATCGCGGCATGGTCAACTTCCAAGAGAAGGGCGT
GAGGAGGAAAAACCGGCGAGCTGTCCGCAATTTTGTTTGTCGGAGGGACCGTGTTCACGGCGGTCCCCTGCACCGTCAGGGAGGACGGCGCTCCGATGCG
CAAGAGCTTTGACCGACAGCGACCCCTCACGCACCTGTGGCTCGACCATCCCCAAGCCAAGCACCTGGAGCACATGGCGCAGCTTCTGGACGCGCTGCCC
GAGGCCACGGAGCTCGCGTTTGGGGACCTCGTCGCAGCTGGCGTCGACCCTCACCTGGGGCGGCAGGGCATGAGCGCCGAGCAAGTGCTCCGCGTGCTCA
TTCTCAAGCAGATGCAGGATTTCAGCTATGAGGAGCTGGAGTTCCATCTGGCTGACTCGGCCACCTACCGAGCCTTCTGTGGATTGGGGATCGCAGACAC
GGCGCCGAGCAAATCGACGTTGCAACGAAACATCAAGGTGATTTCCGAGCAGACCCTGGAGGCCATCCATCGGATGGTCGTCGCCTGCGCCAAGCGTGAG
GGGGTCGACAACGGAAAGCGCGTTCGTGTCGATTCGACTGTCATCAACGCAGCCATTCATCCTCCGACCGACTCATCGCTGCTGAAAGATAGCGTTCGCG
TTCTGACGCGACTGCTGAGCCGCGCCCGTCGGTGGACGAAGAAGAAGTCGACCGACCACCGTCGACGGGCCAAGCGTCGTGCGCTCGGGATTACGCATGC
CAGGTCAGCAGAGCAGCGGCTGCCGCTGTACCGGGATCTCATCGCCGTGACCAAGAAGACGCTCCGCGCTGCGCGGGTCGCGTCGAGCATCTTGCCCAGG
GTGCAAGCCGGCAAGGAGCAAGCCGAGGTGGACAGGTTGGTGGAGCAGCTGCGGTATCACGTCTTGGCGGCTGAGCGCGTGCTCGACCAGGCAGAGCGTC
GGGTGCTGAGGGGGCAATCCGTTCCAGCGCAGCAGAAGGTGGTCTCTATCTTCGAGCCACACGTCGATGTGATCGTCAAAGATCACCGCGAGACACTGTA
TGGGCACAAGGTGTTCTTCTCGGCTGGCGCATCGGGGCTGGTCGTCGATGTCGTTGTCCCCCGAGGCAATCCAGCTGATTCCGCCATGGCCACGACGATG
ATGACGCGGCATGTCGAGATCTGCGGCGAGCCGCCGAAGCAGGCGGCGTTCGATGGCGGGTTTGCTTCCCAGTCCAATCTCGACGCGCTCAAGGGCCTCG
GTATCCGCGACGTCGCTTTCAGCAAGCGCCGTGGGCTCGACGTCATGGAGATGGTCAAGAGCCCGCGCATCTACCGCGCACTACGCAACTTCAGGGCGGG
CATCGAGGGCATCATCTCGTACCTCAAGCGCGCCTTCGGTCTGGCTCGCTGTGACTGGCGCACGCTCGCGTCCTTCAGAGCGTACGTCATGGCCTCCGTG
ATCGCGGCGAACCTGCTGACCATTGCGCTCGGCGTCGCGCGTTAGCCGTTGATTCGCTCCGATGCCGTGAGAGGACCCCGTAAGCACGGGGCGGCTGGAG
GCGTGCGCCCTTGATGCGTGCCAATTGTTGAAAAGCACTCGAGAGGCGTCGTAGATGGCCCGCCAACGGCTTCAGGATCACTCGCTGAGCCTGCGGTAGG
TAGCTCGCTTCTCTACTGGAGACTGACTTCTGGGACGGGAAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1395 bp464 aa2511645+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFTAVPCTVREDGAPMRKSFDRQRPLTHLWLDHPQAKHLEHMAQLLDALPEATELAFGDLVAAGVDPHLGRQGMSAEQVLRVLILKQMQDFSYEELEFHL
ADSATYRAFCGLGIADTAPSKSTLQRNIKVISEQTLEAIHRMVVACAKREGVDNGKRVRVDSTVINAAIHPPTDSSLLKDSVRVLTRLLSRARRWTKKKS
TDHRRRAKRRALGITHARSAEQRLPLYRDLIAVTKKTLRAARVASSILPRVQAGKEQAEVDRLVEQLRYHVLAAERVLDQAERRVLRGQSVPAQQKVVSI
FEPHVDVIVKDHRETLYGHKVFFSAGASGLVVDVVVPRGNPADSAMATTMMTRHVEICGEPPKQAAFDGGFASQSNLDALKGLGIRDVAFSKRRGLDVME
MVKSPRIYRALRNFRAGIEGIISYLKRAFGLARCDWRTLASFRAYVMASVIAANLLTIALGVAR

 

Blast result :
Comments
ISChcr1 is 65% aa similar to ISDol1.
References
1] ISfinder submission (2016)
2] Zaburannyi,N., Bunk,B., Maier,J., Overmann,J. and Mueller,R. (2015) Direct submission GenBank.