ISChcr1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP012159 | ND | Chondromyces crocatus | Chondromyces crocatus strain Cm c5 |
DNA section
IS Length : 1842 bp
Ends
IR Length : 15/20
IRL : GTTCCCGTCCCGAAACGCGGCAAGCCTTGATCCGTAGGAGTGAGCGGGTT
IRR : GTTCCCGTCCCAGAAGTCAGTCTCCAGTAGAGAAGCGAGCTACCTACCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGTTTTTGG | TAGGTA | AGAAAGGCGT | 6 |
DNA sequence
GTTCCCGTCCCGAAACGCGGCAAGCCTTGATCCGTAGGAGTGAGCGGGTTCCGACGTGACGTATCTCTCCGGGAGAGAGGCGACTCAGCGCGATTCCGGG
GGCGAATGCTTCTGCGAAATGCGAGGAACGAGGAGAGAAGAGCGGGAGAGCATCAGGAAGATAGCCATCGCGGCATGGTCAACTTCCAAGAGAAGGGCGT
GAGGAGGAAAAACCGGCGAGCTGTCCGCAATTTTGTTTGTCGGAGGGACCGTGTTCACGGCGGTCCCCTGCACCGTCAGGGAGGACGGCGCTCCGATGCG
CAAGAGCTTTGACCGACAGCGACCCCTCACGCACCTGTGGCTCGACCATCCCCAAGCCAAGCACCTGGAGCACATGGCGCAGCTTCTGGACGCGCTGCCC
GAGGCCACGGAGCTCGCGTTTGGGGACCTCGTCGCAGCTGGCGTCGACCCTCACCTGGGGCGGCAGGGCATGAGCGCCGAGCAAGTGCTCCGCGTGCTCA
TTCTCAAGCAGATGCAGGATTTCAGCTATGAGGAGCTGGAGTTCCATCTGGCTGACTCGGCCACCTACCGAGCCTTCTGTGGATTGGGGATCGCAGACAC
GGCGCCGAGCAAATCGACGTTGCAACGAAACATCAAGGTGATTTCCGAGCAGACCCTGGAGGCCATCCATCGGATGGTCGTCGCCTGCGCCAAGCGTGAG
GGGGTCGACAACGGAAAGCGCGTTCGTGTCGATTCGACTGTCATCAACGCAGCCATTCATCCTCCGACCGACTCATCGCTGCTGAAAGATAGCGTTCGCG
TTCTGACGCGACTGCTGAGCCGCGCCCGTCGGTGGACGAAGAAGAAGTCGACCGACCACCGTCGACGGGCCAAGCGTCGTGCGCTCGGGATTACGCATGC
CAGGTCAGCAGAGCAGCGGCTGCCGCTGTACCGGGATCTCATCGCCGTGACCAAGAAGACGCTCCGCGCTGCGCGGGTCGCGTCGAGCATCTTGCCCAGG
GTGCAAGCCGGCAAGGAGCAAGCCGAGGTGGACAGGTTGGTGGAGCAGCTGCGGTATCACGTCTTGGCGGCTGAGCGCGTGCTCGACCAGGCAGAGCGTC
GGGTGCTGAGGGGGCAATCCGTTCCAGCGCAGCAGAAGGTGGTCTCTATCTTCGAGCCACACGTCGATGTGATCGTCAAAGATCACCGCGAGACACTGTA
TGGGCACAAGGTGTTCTTCTCGGCTGGCGCATCGGGGCTGGTCGTCGATGTCGTTGTCCCCCGAGGCAATCCAGCTGATTCCGCCATGGCCACGACGATG
ATGACGCGGCATGTCGAGATCTGCGGCGAGCCGCCGAAGCAGGCGGCGTTCGATGGCGGGTTTGCTTCCCAGTCCAATCTCGACGCGCTCAAGGGCCTCG
GTATCCGCGACGTCGCTTTCAGCAAGCGCCGTGGGCTCGACGTCATGGAGATGGTCAAGAGCCCGCGCATCTACCGCGCACTACGCAACTTCAGGGCGGG
CATCGAGGGCATCATCTCGTACCTCAAGCGCGCCTTCGGTCTGGCTCGCTGTGACTGGCGCACGCTCGCGTCCTTCAGAGCGTACGTCATGGCCTCCGTG
ATCGCGGCGAACCTGCTGACCATTGCGCTCGGCGTCGCGCGTTAGCCGTTGATTCGCTCCGATGCCGTGAGAGGACCCCGTAAGCACGGGGCGGCTGGAG
GCGTGCGCCCTTGATGCGTGCCAATTGTTGAAAAGCACTCGAGAGGCGTCGTAGATGGCCCGCCAACGGCTTCAGGATCACTCGCTGAGCCTGCGGTAGG
TAGCTCGCTTCTCTACTGGAGACTGACTTCTGGGACGGGAAC
GGCGAATGCTTCTGCGAAATGCGAGGAACGAGGAGAGAAGAGCGGGAGAGCATCAGGAAGATAGCCATCGCGGCATGGTCAACTTCCAAGAGAAGGGCGT
GAGGAGGAAAAACCGGCGAGCTGTCCGCAATTTTGTTTGTCGGAGGGACCGTGTTCACGGCGGTCCCCTGCACCGTCAGGGAGGACGGCGCTCCGATGCG
CAAGAGCTTTGACCGACAGCGACCCCTCACGCACCTGTGGCTCGACCATCCCCAAGCCAAGCACCTGGAGCACATGGCGCAGCTTCTGGACGCGCTGCCC
GAGGCCACGGAGCTCGCGTTTGGGGACCTCGTCGCAGCTGGCGTCGACCCTCACCTGGGGCGGCAGGGCATGAGCGCCGAGCAAGTGCTCCGCGTGCTCA
TTCTCAAGCAGATGCAGGATTTCAGCTATGAGGAGCTGGAGTTCCATCTGGCTGACTCGGCCACCTACCGAGCCTTCTGTGGATTGGGGATCGCAGACAC
GGCGCCGAGCAAATCGACGTTGCAACGAAACATCAAGGTGATTTCCGAGCAGACCCTGGAGGCCATCCATCGGATGGTCGTCGCCTGCGCCAAGCGTGAG
GGGGTCGACAACGGAAAGCGCGTTCGTGTCGATTCGACTGTCATCAACGCAGCCATTCATCCTCCGACCGACTCATCGCTGCTGAAAGATAGCGTTCGCG
TTCTGACGCGACTGCTGAGCCGCGCCCGTCGGTGGACGAAGAAGAAGTCGACCGACCACCGTCGACGGGCCAAGCGTCGTGCGCTCGGGATTACGCATGC
CAGGTCAGCAGAGCAGCGGCTGCCGCTGTACCGGGATCTCATCGCCGTGACCAAGAAGACGCTCCGCGCTGCGCGGGTCGCGTCGAGCATCTTGCCCAGG
GTGCAAGCCGGCAAGGAGCAAGCCGAGGTGGACAGGTTGGTGGAGCAGCTGCGGTATCACGTCTTGGCGGCTGAGCGCGTGCTCGACCAGGCAGAGCGTC
GGGTGCTGAGGGGGCAATCCGTTCCAGCGCAGCAGAAGGTGGTCTCTATCTTCGAGCCACACGTCGATGTGATCGTCAAAGATCACCGCGAGACACTGTA
TGGGCACAAGGTGTTCTTCTCGGCTGGCGCATCGGGGCTGGTCGTCGATGTCGTTGTCCCCCGAGGCAATCCAGCTGATTCCGCCATGGCCACGACGATG
ATGACGCGGCATGTCGAGATCTGCGGCGAGCCGCCGAAGCAGGCGGCGTTCGATGGCGGGTTTGCTTCCCAGTCCAATCTCGACGCGCTCAAGGGCCTCG
GTATCCGCGACGTCGCTTTCAGCAAGCGCCGTGGGCTCGACGTCATGGAGATGGTCAAGAGCCCGCGCATCTACCGCGCACTACGCAACTTCAGGGCGGG
CATCGAGGGCATCATCTCGTACCTCAAGCGCGCCTTCGGTCTGGCTCGCTGTGACTGGCGCACGCTCGCGTCCTTCAGAGCGTACGTCATGGCCTCCGTG
ATCGCGGCGAACCTGCTGACCATTGCGCTCGGCGTCGCGCGTTAGCCGTTGATTCGCTCCGATGCCGTGAGAGGACCCCGTAAGCACGGGGCGGCTGGAG
GCGTGCGCCCTTGATGCGTGCCAATTGTTGAAAAGCACTCGAGAGGCGTCGTAGATGGCCCGCCAACGGCTTCAGGATCACTCGCTGAGCCTGCGGTAGG
TAGCTCGCTTCTCTACTGGAGACTGACTTCTGGGACGGGAAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1395 bp | 464 aa | 251 | 1645 | + | No |
Chemistry : DDE
ORF sequence :
MFTAVPCTVREDGAPMRKSFDRQRPLTHLWLDHPQAKHLEHMAQLLDALPEATELAFGDLVAAGVDPHLGRQGMSAEQVLRVLILKQMQDFSYEELEFHL
ADSATYRAFCGLGIADTAPSKSTLQRNIKVISEQTLEAIHRMVVACAKREGVDNGKRVRVDSTVINAAIHPPTDSSLLKDSVRVLTRLLSRARRWTKKKS
TDHRRRAKRRALGITHARSAEQRLPLYRDLIAVTKKTLRAARVASSILPRVQAGKEQAEVDRLVEQLRYHVLAAERVLDQAERRVLRGQSVPAQQKVVSI
FEPHVDVIVKDHRETLYGHKVFFSAGASGLVVDVVVPRGNPADSAMATTMMTRHVEICGEPPKQAAFDGGFASQSNLDALKGLGIRDVAFSKRRGLDVME
MVKSPRIYRALRNFRAGIEGIISYLKRAFGLARCDWRTLASFRAYVMASVIAANLLTIALGVAR
ADSATYRAFCGLGIADTAPSKSTLQRNIKVISEQTLEAIHRMVVACAKREGVDNGKRVRVDSTVINAAIHPPTDSSLLKDSVRVLTRLLSRARRWTKKKS
TDHRRRAKRRALGITHARSAEQRLPLYRDLIAVTKKTLRAARVASSILPRVQAGKEQAEVDRLVEQLRYHVLAAERVLDQAERRVLRGQSVPAQQKVVSI
FEPHVDVIVKDHRETLYGHKVFFSAGASGLVVDVVVPRGNPADSAMATTMMTRHVEICGEPPKQAAFDGGFASQSNLDALKGLGIRDVAFSKRRGLDVME
MVKSPRIYRALRNFRAGIEGIISYLKRAFGLARCDWRTLASFRAYVMASVIAANLLTIALGVAR
Blast result :
Comments
ISChcr1 is 65% aa similar to ISDol1.
References
1] ISfinder submission (2016)
2] Zaburannyi,N., Bunk,B., Maier,J., Overmann,J. and Mueller,R. (2015) Direct submission GenBank.
2] Zaburannyi,N., Bunk,B., Maier,J., Overmann,J. and Mueller,R. (2015) Direct submission GenBank.