ISMass1

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JPXI01000018 ND Massilia sp.
Massilia sp. BSC265
DNA section
IS Length : 1354 bp

Ends


IR Length : 12/13

IRL : TAATGAGATGGTCACCCTCCACCCTACAAGTTACTAAGCTTGTAGGGTGT
IRR : ----TCTATGGCCACCCTCCTTTTTGCAAGCTGATTTTGTATGATGTAGT

Comments : The IRs are not at the termini as in others IS1111 group members.

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNTTTTCTTGCCCGTTGG0
CCGCTGCGGCGGGGTTNNNNN0

DNA sequence

TAATGAGATGGTCACCCTCCACCCTACAAGTTACTAAGCTTGTAGGGTGTTTTCATTTTTGGACGGAGGCCATCATGCAAGACGTCGCTCTCATCGGCAT
CGATCTCGGCAAGCACGGCTTTCACGTGCACGGACAGGATCGGCACGGCAAGGCGGTGTTGCGCAGGAAGTTCGACCGCAAGCACCTGATCACGTTTCTC
GCCAACTTCCAGCCTTGCACGATCGTGATGGAAGCCTGTGCCGGCGCCCACTGGATGGCGCGGCAGCTGTCGGCACTTGGCCACGAGGCCAAACTCATTT
CCCCTCAGTTTGTCCGGCCCTTCGTCAAGGGCAACAAGAACGACTTCATCGATGCAGAAGCGATCTGCGAAGCGGCCAGCCGGCCATCAATGCGTTTTGT
CACGCCCAAGACTGAAGCCCAGCAATGCCTGTCGGCCCTGCACCGAACGCGCGAGTCGCTGATGCGCGACCGGGTCAAGGCAATCAACCAGATCCACGCC
TTTCTGCTCGAGTTTGGAATCGGCCTGCCCAAAGGCCCGGCAATCATACGGCGCCTGCCTTCCGTACTGGCAGAGCACGCTCTGCCAGTACGGCTGGTCA
GCCTGATCGAGAGACTGCGTGCCCACATCAAGTATCTCGACGAGCAGCTCGACGAGCTCGAAAAGGAGCTGGGCAGGCAACTGCAGGAAGACGACCTTGG
ACAGCGCCTGATGGCGATTCCTGGCGTCGGACCGATTACTGCGAGCGCCTTGTCGGCCGAGATGGGCGACGGCAAGCAATATGGCTGCGGACGCGATTTC
GCCGCCTCGCTTGGCCTGGTGCCCCAGCAGCACAGTACTGGTGGGAGAGCGAATCTGCTGGGCATTAGCAAACGTGGCGACAAGAATATCCGACGCCTGC
TGGTGCAATGCGCGCGATCCTACATGCGCGGTTTGGACCGGCATACCGACCGCCTGGCGCAGTGGGCCCGCTCCATGCTGGAGCGACGACACTCCAACGT
CGTGGCGTGCGCACTGGCGTACAAGCTGGCCCGCACGGCCTGGGCCATGGCCGCACACCATACCGAATACAAAATGCAAGAGGCCGTCACATCGCTGTGA
CGGCCTCCCGAGCTTGCTGTACCTAACCACCTACTTGGTTTTGCGACGCTGATACTGGATGACGTGAACGGCACACCGGCCTGATGGATAACCTGGCAAA
AAAATCGGCTCATCAAGCCGCAGGTTTTTTTAGGACCATCAGGCGCGAACTCTCATCGTGGCGCGGAGCAAGTCTCCAGCATGACGCCGGATAGATTTGA
GCAAGCCAACTACATCATACAAAATCAGCTTGCAAAAAGGAGGGTGGCCATAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp341 aa751100+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MQDVALIGIDLGKHGFHVHGQDRHGKAVLRRKFDRKHLITFLANFQPCTIVMEACAGAHWMARQLSALGHEAKLISPQFVRPFVKGNKNDFIDAEAICEA
ASRPSMRFVTPKTEAQQCLSALHRTRESLMRDRVKAINQIHAFLLEFGIGLPKGPAIIRRLPSVLAEHALPVRLVSLIERLRAHIKYLDEQLDELEKELG
RQLQEDDLGQRLMAIPGVGPITASALSAEMGDGKQYGCGRDFAASLGLVPQQHSTGGRANLLGISKRGDKNIRRLLVQCARSYMRGLDRHTDRLAQWARS
MLERRHSNVVACALAYKLARTAWAMAAHHTEYKMQEAVTSL

 

Blast result :
Comments
ISMass1 is 89% aa similar to ISHar6.
References
1] ISfinder submission (2016)
2] Bailey,A.C., Kellom,M., Poret-Peterson,A.T., Noonan,K., Hartnett,H.E. and Raymond,J. (2014) Genome Announc 2 (6).