ISHsp4
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AXCA01000014 | ND | Halomonas sp. | Halomonas sp. PBN3 |
DNA section
IS Length : 1027 bp
Ends
IR Length : 22/27
IRL : CCTGATTACTCATGTTGATCAGCCACCACCTCGTCAGCCTGGCCTACACT
IRR : CCTGATTACGCATATGGCTCAGCCAGCTTCAGCAGCCGGTAAGGCATTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGAGACCCT | AAGAGTTT | TTCCACATAC | 8 |
DNA sequence
CCTGATTACTCATGTTGATCAGCCACCACCTCGTCAGCCTGGCCTACACTGATGGTATATCCAGTAGAGGAGGCGGCGTCATGGCACGTAATCCTATCCA
GTTCCAGGCCGGCCTGTCGTTGCCGGCGTTTCTCGAGCAGTACGGCACGGAAGCGCAGTGCCGGGCGGCCCTCTACCGGCATCGCTGGCCCAAAGGGTTC
GTATGCCCCGACTGCGGCAACACCACCGGCTGCCGGTTATCGCGCGGGCTCTACCAGTGCCATCACTGCCATCATCAGACCTCGCTCACCGCCGGTACCA
TCTTCCATGGTACTCACCTGCCGCTGACCACCTGGTTCCTGGCGATCTATCTGCTCACCCAGCGCAAGAGCGGCATTTCGGCGCTGCAGCTGTCCCGGGA
GCTCGGCGTCACCTACAACACGGCCTGGAAGCTCAAACACAAGCTGCTGCAGGTCATGCTCGAGCGTAACCAGAGCGAGCGGCTTGGCGGGCGCATCGAG
ATCGATGATGCCTACCTGGGCGGCGAGCGGCCGGGAAAGCGCGGACGCGGCGCCGAGCACAAGTTCCCGTTCGTCGCCGCGGTGCAGACCGATGAGGCGG
GGCACCCTCGGCGCGTCCAGTTGCGCCGCGTGAGCGGCTTTACCCTGGCCGAGGTGCGCCGCTATGCCCGCGCCGCCATCGTACCCGGTAGTCGAGTGGT
CAGTGATGGCCTGGTGTGTTTCCGGGCCTTCGCGTCACTGGACTACCCCCATGAGCGCATCATCACCGGCAGTGGCCGTGCCAGCACGCAGATCCCTGCG
TTCAACTGGGTCAACACCGTGCTGGGCAACGTCAAGAACGCCATCACCGGCACTTACCATGCGATCCGTGGTCACCATGCCCCGCGCTACCTGGCCGAGT
TCGAGTACCGCTTCAACCGGCGCTATGACCTCAAGGCCATGCTGCCGCGCTTTCTGACGGTGGCGGCCAGAACACCGCCAATGCCTTACCGGCTGCTGAA
GCTGGCTGAGCCATATGCGTAATCAGG
GTTCCAGGCCGGCCTGTCGTTGCCGGCGTTTCTCGAGCAGTACGGCACGGAAGCGCAGTGCCGGGCGGCCCTCTACCGGCATCGCTGGCCCAAAGGGTTC
GTATGCCCCGACTGCGGCAACACCACCGGCTGCCGGTTATCGCGCGGGCTCTACCAGTGCCATCACTGCCATCATCAGACCTCGCTCACCGCCGGTACCA
TCTTCCATGGTACTCACCTGCCGCTGACCACCTGGTTCCTGGCGATCTATCTGCTCACCCAGCGCAAGAGCGGCATTTCGGCGCTGCAGCTGTCCCGGGA
GCTCGGCGTCACCTACAACACGGCCTGGAAGCTCAAACACAAGCTGCTGCAGGTCATGCTCGAGCGTAACCAGAGCGAGCGGCTTGGCGGGCGCATCGAG
ATCGATGATGCCTACCTGGGCGGCGAGCGGCCGGGAAAGCGCGGACGCGGCGCCGAGCACAAGTTCCCGTTCGTCGCCGCGGTGCAGACCGATGAGGCGG
GGCACCCTCGGCGCGTCCAGTTGCGCCGCGTGAGCGGCTTTACCCTGGCCGAGGTGCGCCGCTATGCCCGCGCCGCCATCGTACCCGGTAGTCGAGTGGT
CAGTGATGGCCTGGTGTGTTTCCGGGCCTTCGCGTCACTGGACTACCCCCATGAGCGCATCATCACCGGCAGTGGCCGTGCCAGCACGCAGATCCCTGCG
TTCAACTGGGTCAACACCGTGCTGGGCAACGTCAAGAACGCCATCACCGGCACTTACCATGCGATCCGTGGTCACCATGCCCCGCGCTACCTGGCCGAGT
TCGAGTACCGCTTCAACCGGCGCTATGACCTCAAGGCCATGCTGCCGCGCTTTCTGACGGTGGCGGCCAGAACACCGCCAATGCCTTACCGGCTGCTGAA
GCTGGCTGAGCCATATGCGTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 81 | 1022 | + | No |
Chemistry : DDE
ORF sequence :
MARNPIQFQAGLSLPAFLEQYGTEAQCRAALYRHRWPKGFVCPDCGNTTGCRLSRGLYQCHHCHHQTSLTAGTIFHGTHLPLTTWFLAIYLLTQRKSGIS
ALQLSRELGVTYNTAWKLKHKLLQVMLERNQSERLGGRIEIDDAYLGGERPGKRGRGAEHKFPFVAAVQTDEAGHPRRVQLRRVSGFTLAEVRRYARAAI
VPGSRVVSDGLVCFRAFASLDYPHERIITGSGRASTQIPAFNWVNTVLGNVKNAITGTYHAIRGHHAPRYLAEFEYRFNRRYDLKAMLPRFLTVAARTPP
MPYRLLKLAEPYA
ALQLSRELGVTYNTAWKLKHKLLQVMLERNQSERLGGRIEIDDAYLGGERPGKRGRGAEHKFPFVAAVQTDEAGHPRRVQLRRVSGFTLAEVRRYARAAI
VPGSRVVSDGLVCFRAFASLDYPHERIITGSGRASTQIPAFNWVNTVLGNVKNAITGTYHAIRGHHAPRYLAEFEYRFNRRYDLKAMLPRFLTVAARTPP
MPYRLLKLAEPYA
Blast result :
Comments
ISHsp4 is 89% aa similar to ISMrsp2.
References