ISBba1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JYOD01000183 | ND | Burkholderiaceae bacterium | Burkholderiaceae bacterium 16 |
DNA section
IS Length : 1082 bp
Ends
IR Length : 23
IRL : AAGGGGTATCCACTTAGCTCCAGTCGTGCCAGAATCACTGGATGGATATA
IRR : AAGGGGTATCCACTTAGCTCCAGCAACGCCGAGACAACTGGATGGATATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGATACTGT | ATGAATAT | ACAGTAATCG | 8 |
DNA sequence
AAGGGGTATCCACTTAGCTCCAGTCGTGCCAGAATCACTGGATGGATATACAGATGTTACCTCCAGAGGCAGGCAAGGACTACCCGCGCAATTGGAACGA
GTTTCTGGACCGTTTCGCGACTGAGGAATCCTGCCTGTCGTACTTGGAGGGGCTGCGGTGGCCGCAGGGATTTGTTTGTCCTGACTGTGGTGCTGCAGAG
GAACCCTATCGATCGAGCCGCACCCGCCTGATGTGCCGGAGTTGCGGTTATCAAAGCACGGTGACCGCAGGCACGATCTTCGATAAAACCCGCACGTCGC
TGCGTGTGTGGCTGGCCGGAGCCTGGTACCTAACCAATCAAAAGCAAGGTGTCAGCGCCCTCGGATTGCAACGCGTGCTGGGCCTGGGTAGCTACCAGAC
CGCCTGGACTATGCTGCACCGGTTTCGCCGGGCGATGGTGCGGCCTGATCGCGAGCGCTTGAGGGGGTGCGTTGAGGTTGACGAAACCTACCTGGCCATC
ACGGATCGTGAGGCGCCGATTTTGTCGGTAAGCTGCAAGAACCGCACCAGTAAAGTGCTGGTGATGCTCGCGGTGGAGGTGCTCCAGCCCAAGGGATTCG
GTCGGATTCGCTTGCAGCGGGTCCACAACGACGCAGAAGAATGTGTCGTGCCGTTTGTGCAGGCGTCGATTGAACCTGGCACCCAAGTCCGAACCGATGG
ATCGGCGGCCTACCGCTCCTTGAGCAAGTTGGGCTATGACCACCAGCGCCATGTCATGCTCGGCTCCGAAGTGCCGGCCCATCTCTCGATGGCCGGCGTG
CACCGGGTTGCCTCATTGGTCAAGCGGTGGATCTTGGGCACGCACCACGGCTCGGTCCAGCCGGAACACCTTGATGCTTACCTGGATGAATTCGTGTTCC
GTTTCAATCGGCGCACTTCGGGCTCGCGCGGCTTGCTGTTCTATCGATTGCTCCAACAGGCCGTCGCCACCGGGCCTGTGACTTACAAGGAAGTAGTGCG
CAACGGGCAGTAGGTGTAGCATACTGGCACTGTATATCCATCCAGTTGTCTCGGCGTTGCTGGAGCTAAGTGGATACCCCTT
GTTTCTGGACCGTTTCGCGACTGAGGAATCCTGCCTGTCGTACTTGGAGGGGCTGCGGTGGCCGCAGGGATTTGTTTGTCCTGACTGTGGTGCTGCAGAG
GAACCCTATCGATCGAGCCGCACCCGCCTGATGTGCCGGAGTTGCGGTTATCAAAGCACGGTGACCGCAGGCACGATCTTCGATAAAACCCGCACGTCGC
TGCGTGTGTGGCTGGCCGGAGCCTGGTACCTAACCAATCAAAAGCAAGGTGTCAGCGCCCTCGGATTGCAACGCGTGCTGGGCCTGGGTAGCTACCAGAC
CGCCTGGACTATGCTGCACCGGTTTCGCCGGGCGATGGTGCGGCCTGATCGCGAGCGCTTGAGGGGGTGCGTTGAGGTTGACGAAACCTACCTGGCCATC
ACGGATCGTGAGGCGCCGATTTTGTCGGTAAGCTGCAAGAACCGCACCAGTAAAGTGCTGGTGATGCTCGCGGTGGAGGTGCTCCAGCCCAAGGGATTCG
GTCGGATTCGCTTGCAGCGGGTCCACAACGACGCAGAAGAATGTGTCGTGCCGTTTGTGCAGGCGTCGATTGAACCTGGCACCCAAGTCCGAACCGATGG
ATCGGCGGCCTACCGCTCCTTGAGCAAGTTGGGCTATGACCACCAGCGCCATGTCATGCTCGGCTCCGAAGTGCCGGCCCATCTCTCGATGGCCGGCGTG
CACCGGGTTGCCTCATTGGTCAAGCGGTGGATCTTGGGCACGCACCACGGCTCGGTCCAGCCGGAACACCTTGATGCTTACCTGGATGAATTCGTGTTCC
GTTTCAATCGGCGCACTTCGGGCTCGCGCGGCTTGCTGTTCTATCGATTGCTCCAACAGGCCGTCGCCACCGGGCCTGTGACTTACAAGGAAGTAGTGCG
CAACGGGCAGTAGGTGTAGCATACTGGCACTGTATATCCATCCAGTTGTCTCGGCGTTGCTGGAGCTAAGTGGATACCCCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 42 | 1013 | + | No |
Chemistry : DDE
ORF sequence :
MDIQMLPPEAGKDYPRNWNEFLDRFATEESCLSYLEGLRWPQGFVCPDCGAAEEPYRSSRTRLMCRSCGYQSTVTAGTIFDKTRTSLRVWLAGAWYLTNQ
KQGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPDRERLRGCVEVDETYLAITDREAPILSVSCKNRTSKVLVMLAVEVLQPKGFGRIRLQRVHNDAEE
CVVPFVQASIEPGTQVRTDGSAAYRSLSKLGYDHQRHVMLGSEVPAHLSMAGVHRVASLVKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSGSRGLLF
YRLLQQAVATGPVTYKEVVRNGQ
KQGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPDRERLRGCVEVDETYLAITDREAPILSVSCKNRTSKVLVMLAVEVLQPKGFGRIRLQRVHNDAEE
CVVPFVQASIEPGTQVRTDGSAAYRSLSKLGYDHQRHVMLGSEVPAHLSMAGVHRVASLVKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSGSRGLLF
YRLLQQAVATGPVTYKEVVRNGQ
Blast result :
Comments
ISBba1 is 89% aa similar to ISPosp3.
References