ISBba1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JYOD01000183 ND Burkholderiaceae bacterium
Burkholderiaceae bacterium 16
DNA section
IS Length : 1082 bp

Ends


IR Length : 23

IRL : AAGGGGTATCCACTTAGCTCCAGTCGTGCCAGAATCACTGGATGGATATA
IRR : AAGGGGTATCCACTTAGCTCCAGCAACGCCGAGACAACTGGATGGATATA

Insertion site


Left flankDirect repeatRight flankDR Length
GTGATACTGTATGAATATACAGTAATCG8

DNA sequence

AAGGGGTATCCACTTAGCTCCAGTCGTGCCAGAATCACTGGATGGATATACAGATGTTACCTCCAGAGGCAGGCAAGGACTACCCGCGCAATTGGAACGA
GTTTCTGGACCGTTTCGCGACTGAGGAATCCTGCCTGTCGTACTTGGAGGGGCTGCGGTGGCCGCAGGGATTTGTTTGTCCTGACTGTGGTGCTGCAGAG
GAACCCTATCGATCGAGCCGCACCCGCCTGATGTGCCGGAGTTGCGGTTATCAAAGCACGGTGACCGCAGGCACGATCTTCGATAAAACCCGCACGTCGC
TGCGTGTGTGGCTGGCCGGAGCCTGGTACCTAACCAATCAAAAGCAAGGTGTCAGCGCCCTCGGATTGCAACGCGTGCTGGGCCTGGGTAGCTACCAGAC
CGCCTGGACTATGCTGCACCGGTTTCGCCGGGCGATGGTGCGGCCTGATCGCGAGCGCTTGAGGGGGTGCGTTGAGGTTGACGAAACCTACCTGGCCATC
ACGGATCGTGAGGCGCCGATTTTGTCGGTAAGCTGCAAGAACCGCACCAGTAAAGTGCTGGTGATGCTCGCGGTGGAGGTGCTCCAGCCCAAGGGATTCG
GTCGGATTCGCTTGCAGCGGGTCCACAACGACGCAGAAGAATGTGTCGTGCCGTTTGTGCAGGCGTCGATTGAACCTGGCACCCAAGTCCGAACCGATGG
ATCGGCGGCCTACCGCTCCTTGAGCAAGTTGGGCTATGACCACCAGCGCCATGTCATGCTCGGCTCCGAAGTGCCGGCCCATCTCTCGATGGCCGGCGTG
CACCGGGTTGCCTCATTGGTCAAGCGGTGGATCTTGGGCACGCACCACGGCTCGGTCCAGCCGGAACACCTTGATGCTTACCTGGATGAATTCGTGTTCC
GTTTCAATCGGCGCACTTCGGGCTCGCGCGGCTTGCTGTTCTATCGATTGCTCCAACAGGCCGTCGCCACCGGGCCTGTGACTTACAAGGAAGTAGTGCG
CAACGGGCAGTAGGTGTAGCATACTGGCACTGTATATCCATCCAGTTGTCTCGGCGTTGCTGGAGCTAAGTGGATACCCCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa421013+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDIQMLPPEAGKDYPRNWNEFLDRFATEESCLSYLEGLRWPQGFVCPDCGAAEEPYRSSRTRLMCRSCGYQSTVTAGTIFDKTRTSLRVWLAGAWYLTNQ
KQGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPDRERLRGCVEVDETYLAITDREAPILSVSCKNRTSKVLVMLAVEVLQPKGFGRIRLQRVHNDAEE
CVVPFVQASIEPGTQVRTDGSAAYRSLSKLGYDHQRHVMLGSEVPAHLSMAGVHRVASLVKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSGSRGLLF
YRLLQQAVATGPVTYKEVVRNGQ

 

Blast result :
Comments
ISBba1 is 89% aa similar to ISPosp3.
References