ISRsy1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR854092 | ND | Ralstonia syzygii | Ralstonia syzygii R24 |
DNA section
IS Length : 1090 bp
Ends
IR Length : 44/53
IRL : AAGAGGTATCCACTTAGCTCCAGCTATGCCAGAATTACTGGATGGATATA
IRR : GTGGGGTATCCACTTAGCTCCACCAGCCCAGGATAACTGGATGGATATAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCGAACTGT | ATGAATAT | ACAGCACGTC | 8 |
DNA sequence
AAGAGGTATCCACTTAGCTCCAGCTATGCCAGAATTACTGGATGGATATACAGGTAGAGCAGATATTACCTCCAGAACCGGGCAAGGACTACCCCCGCAA
CTGGAACGAATTTCTGGACCGGTTCGGGACGGAAGAGGCTTGCCTGTCCTACCTGGAGGCATTGCGGTGGCCGCAGGGGTTCATTTGCCCTGATTGCGGC
GTGGCGGCCGAGCCTTATCGGTCGAGTCGCACGCGCCTGATGTGCCGCAGTTGCGGCCACCAAACGACGGTGACCGCTGGCACGATATTCGACAAGACCC
GCACCCCGCTACGTGTGTGGCTGGCTGGCGCGTGGTATCTGACCAATCAGAAGCAAGGCGTTAGCGCCCTTGGTTTGCAACGGGTGCTGGGTCTGGGAAG
CTACCAAACCGCTTGGACGATGCTGCACCGGTTTCGCCGCGCCATGGTGCGGCCGGACCGCGAACGCCTGAAGGGGTGTGTTGAGGTTGACGAGACCTAC
CTGGCCATCACGGACCGGGAAGCCCCTATCTCGGCCGTCAACCGCAAGAACCGCACGAGCAAGGTGCTGGTCATCCTTGCGGTCGAAATGCTTCAGCCCA
AGGGCTTCGGCCGGATACGCTTGCAGCGCATCCACAACGATGGTGCCGAATGCGTTATCCCATTCATACAGGCGTCGATTGAGCCTGGCGCCCAAGTCAG
AACTGACGGGTCAGCGGCCTACCGGACATTGAGCAAGCTGGGCTACGACCACCAGCGCAATGTGATGCTCGGTGCCGAAGTGCCGGCGCATGTTTCCATG
GCCGGCGTGCATCGGGTCGCCTCACTGGTCAAACGCTGGATTCTCGGCACGCATCACGGCTCGGTTCAGCCCGAGCATCTGGATGCCTATCTAGATGAGT
TCGTGTTCCGCTTCAATCGCCGCACCTCGGGCTCGCGCGGCCTCTTGTTCTATCGGCTGCTTCAGCAAGCGGTCGTTACTGGCCCTGTGACGTATGCGGA
TGTAGTGCACCGCGCTGAGACGGTGTAGCATACGGATACTGTATATCCATCCAGTTATCCTGGGCTGGTGGAGCTAAGTGGATACCCCAC
CTGGAACGAATTTCTGGACCGGTTCGGGACGGAAGAGGCTTGCCTGTCCTACCTGGAGGCATTGCGGTGGCCGCAGGGGTTCATTTGCCCTGATTGCGGC
GTGGCGGCCGAGCCTTATCGGTCGAGTCGCACGCGCCTGATGTGCCGCAGTTGCGGCCACCAAACGACGGTGACCGCTGGCACGATATTCGACAAGACCC
GCACCCCGCTACGTGTGTGGCTGGCTGGCGCGTGGTATCTGACCAATCAGAAGCAAGGCGTTAGCGCCCTTGGTTTGCAACGGGTGCTGGGTCTGGGAAG
CTACCAAACCGCTTGGACGATGCTGCACCGGTTTCGCCGCGCCATGGTGCGGCCGGACCGCGAACGCCTGAAGGGGTGTGTTGAGGTTGACGAGACCTAC
CTGGCCATCACGGACCGGGAAGCCCCTATCTCGGCCGTCAACCGCAAGAACCGCACGAGCAAGGTGCTGGTCATCCTTGCGGTCGAAATGCTTCAGCCCA
AGGGCTTCGGCCGGATACGCTTGCAGCGCATCCACAACGATGGTGCCGAATGCGTTATCCCATTCATACAGGCGTCGATTGAGCCTGGCGCCCAAGTCAG
AACTGACGGGTCAGCGGCCTACCGGACATTGAGCAAGCTGGGCTACGACCACCAGCGCAATGTGATGCTCGGTGCCGAAGTGCCGGCGCATGTTTCCATG
GCCGGCGTGCATCGGGTCGCCTCACTGGTCAAACGCTGGATTCTCGGCACGCATCACGGCTCGGTTCAGCCCGAGCATCTGGATGCCTATCTAGATGAGT
TCGTGTTCCGCTTCAATCGCCGCACCTCGGGCTCGCGCGGCCTCTTGTTCTATCGGCTGCTTCAGCAAGCGGTCGTTACTGGCCCTGTGACGTATGCGGA
TGTAGTGCACCGCGCTGAGACGGTGTAGCATACGGATACTGTATATCCATCCAGTTATCCTGGGCTGGTGGAGCTAAGTGGATACCCCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 38 | 1024 | + | No |
Chemistry : DDE
ORF sequence :
MDIQVEQILPPEPGKDYPRNWNEFLDRFGTEEACLSYLEALRWPQGFICPDCGVAAEPYRSSRTRLMCRSCGHQTTVTAGTIFDKTRTPLRVWLAGAWYL
TNQKQGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPDRERLKGCVEVDETYLAITDREAPISAVNRKNRTSKVLVILAVEMLQPKGFGRIRLQRIHND
GAECVIPFIQASIEPGAQVRTDGSAAYRTLSKLGYDHQRNVMLGAEVPAHVSMAGVHRVASLVKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSGSRG
LLFYRLLQQAVVTGPVTYADVVHRAETV
TNQKQGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPDRERLKGCVEVDETYLAITDREAPISAVNRKNRTSKVLVILAVEMLQPKGFGRIRLQRIHND
GAECVIPFIQASIEPGAQVRTDGSAAYRTLSKLGYDHQRNVMLGAEVPAHVSMAGVHRVASLVKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSGSRG
LLFYRLLQQAVVTGPVTYADVVHRAETV
Blast result :
Comments
ISRsy1 is 89% aa similar to ISPosp3.
References