ISVapa1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001636 | ND | Variovorax paradoxus | Variovorax paradoxus S110 |
DNA section
IS Length : 1088 bp
Ends
IR Length : 23
IRL : AAGGGGTATCCTCTTAGCTCCAGCAACTGAGAGAGCACTGGATGGATGTA
IRR : AAGGGGTATCCTCTTAGCTCCAGAAGGTCTGAGTGACTGGATGAATATAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATACTACTGT | ATATTCAT | ACAGGTGTAC | 8 |
DNA sequence
AAGGGGTATCCTCTTAGCTCCAGCAACTGAGAGAGCACTGGATGGATGTACAGATATTAGCGCCGACAGCGGGCAAGGACTACCCCCAGACCTGGAATGA
ATTCCTGGACTGGTTTTCCACGGAGGATGACTGTCTCGCCTACCTGGAGCGGCTGCGCTGGGGCGCTGGGTTCGTCTGCCCGAAGTGCGGCAGCATTGGC
GAGGCGTACCGTGCCAGCCGCACCCGCCTGATGTGCCGCAGCTGCCAGCACCAGACCACGGTGACTGCCGGTACGATCTTCGACAAGACCCGCACGCCAC
TGCGTGTGTGGCTGGCCGCGGCTTGGTATCTGACCAACCAGAAGCAAGGCGTCAGTGCCTTGGGCCTGCAGCGTGTGCTGGGCCTGGGCAGCTACCAGAC
CGCCTGGACCATGCTGCACCGTTTGCGCCGCGCTATGGTGCGGCCCGAGCGGGATCGGCTCAAGGGCACGGTCGAGGTTGATGAGACCTATCTGGCGCTG
AGCGACCGCGAGAATCCGATTTCTCCCCAGGGGCGCAAGAACAGTACCTCTCAGGTGCTCGTCGTCCTGGCTGTGGAGGTGCTGGAGCCCAAGGGATTCG
GCCGGATCCGCCTGCGCCGCATCCCCAAGGACTCCGCCACCCATGTGATCCCATTTGTGCAGGAGAACGTTGAGCCAGGCGCCCAGGTGCGCACCGATGG
CTCTGCGGCCTATCGTTCACTGAAGGATCTCGGCTATGAGCACAAGCGCACGGTGGTGCTCGGCTCGCAGGTGCCGGCCCATGTGTCGATGGCCGGCGTC
CACCGCGTGGCCGCACTGATCAAGCGCTGGATTCTGGGTACGCATCATGGCTCGGTGCAGCCCGAACATCTGGACGCCTATCTCGATGAGTTCGTCTTCC
GCTTCAACCGTCGCACCTCAAGCTCGCGCGGCATGTTGTTCTACCGACTCTTGCAGCAGGCCGTGGTCACCCCACCGGTGACCTATCAGCAGGTGATTCA
GGCGGGTGCAAAACAGCGCCGAAAAGGATAGGATAACTGTATATTCATCCAGTCACTCAGACCTTCTGGAGCTAAGAGGATACCCCTT
ATTCCTGGACTGGTTTTCCACGGAGGATGACTGTCTCGCCTACCTGGAGCGGCTGCGCTGGGGCGCTGGGTTCGTCTGCCCGAAGTGCGGCAGCATTGGC
GAGGCGTACCGTGCCAGCCGCACCCGCCTGATGTGCCGCAGCTGCCAGCACCAGACCACGGTGACTGCCGGTACGATCTTCGACAAGACCCGCACGCCAC
TGCGTGTGTGGCTGGCCGCGGCTTGGTATCTGACCAACCAGAAGCAAGGCGTCAGTGCCTTGGGCCTGCAGCGTGTGCTGGGCCTGGGCAGCTACCAGAC
CGCCTGGACCATGCTGCACCGTTTGCGCCGCGCTATGGTGCGGCCCGAGCGGGATCGGCTCAAGGGCACGGTCGAGGTTGATGAGACCTATCTGGCGCTG
AGCGACCGCGAGAATCCGATTTCTCCCCAGGGGCGCAAGAACAGTACCTCTCAGGTGCTCGTCGTCCTGGCTGTGGAGGTGCTGGAGCCCAAGGGATTCG
GCCGGATCCGCCTGCGCCGCATCCCCAAGGACTCCGCCACCCATGTGATCCCATTTGTGCAGGAGAACGTTGAGCCAGGCGCCCAGGTGCGCACCGATGG
CTCTGCGGCCTATCGTTCACTGAAGGATCTCGGCTATGAGCACAAGCGCACGGTGGTGCTCGGCTCGCAGGTGCCGGCCCATGTGTCGATGGCCGGCGTC
CACCGCGTGGCCGCACTGATCAAGCGCTGGATTCTGGGTACGCATCATGGCTCGGTGCAGCCCGAACATCTGGACGCCTATCTCGATGAGTTCGTCTTCC
GCTTCAACCGTCGCACCTCAAGCTCGCGCGGCATGTTGTTCTACCGACTCTTGCAGCAGGCCGTGGTCACCCCACCGGTGACCTATCAGCAGGTGATTCA
GGCGGGTGCAAAACAGCGCCGAAAAGGATAGGATAACTGTATATTCATCCAGTCACTCAGACCTTCTGGAGCTAAGAGGATACCCCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
990 bp | 329 aa | 42 | 1031 | + | No |
Chemistry : DDE
ORF sequence :
MDVQILAPTAGKDYPQTWNEFLDWFSTEDDCLAYLERLRWGAGFVCPKCGSIGEAYRASRTRLMCRSCQHQTTVTAGTIFDKTRTPLRVWLAAAWYLTNQ
KQGVSALGLQRVLGLGSYQTAWTMLHRLRRAMVRPERDRLKGTVEVDETYLALSDRENPISPQGRKNSTSQVLVVLAVEVLEPKGFGRIRLRRIPKDSAT
HVIPFVQENVEPGAQVRTDGSAAYRSLKDLGYEHKRTVVLGSQVPAHVSMAGVHRVAALIKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQAVVTPPVTYQQVIQAGAKQRRKG
KQGVSALGLQRVLGLGSYQTAWTMLHRLRRAMVRPERDRLKGTVEVDETYLALSDRENPISPQGRKNSTSQVLVVLAVEVLEPKGFGRIRLRRIPKDSAT
HVIPFVQENVEPGAQVRTDGSAAYRSLKDLGYEHKRTVVLGSQVPAHVSMAGVHRVAALIKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQAVVTPPVTYQQVIQAGAKQRRKG
Blast result :
Comments
ISVapa1 is 92% aa similar to ISAisp1.
References