ISVapa1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001636 ND Variovorax paradoxus
Variovorax paradoxus S110
DNA section
IS Length : 1088 bp

Ends


IR Length : 23

IRL : AAGGGGTATCCTCTTAGCTCCAGCAACTGAGAGAGCACTGGATGGATGTA
IRR : AAGGGGTATCCTCTTAGCTCCAGAAGGTCTGAGTGACTGGATGAATATAC

Insertion site


Left flankDirect repeatRight flankDR Length
ATACTACTGTATATTCATACAGGTGTAC8

DNA sequence

AAGGGGTATCCTCTTAGCTCCAGCAACTGAGAGAGCACTGGATGGATGTACAGATATTAGCGCCGACAGCGGGCAAGGACTACCCCCAGACCTGGAATGA
ATTCCTGGACTGGTTTTCCACGGAGGATGACTGTCTCGCCTACCTGGAGCGGCTGCGCTGGGGCGCTGGGTTCGTCTGCCCGAAGTGCGGCAGCATTGGC
GAGGCGTACCGTGCCAGCCGCACCCGCCTGATGTGCCGCAGCTGCCAGCACCAGACCACGGTGACTGCCGGTACGATCTTCGACAAGACCCGCACGCCAC
TGCGTGTGTGGCTGGCCGCGGCTTGGTATCTGACCAACCAGAAGCAAGGCGTCAGTGCCTTGGGCCTGCAGCGTGTGCTGGGCCTGGGCAGCTACCAGAC
CGCCTGGACCATGCTGCACCGTTTGCGCCGCGCTATGGTGCGGCCCGAGCGGGATCGGCTCAAGGGCACGGTCGAGGTTGATGAGACCTATCTGGCGCTG
AGCGACCGCGAGAATCCGATTTCTCCCCAGGGGCGCAAGAACAGTACCTCTCAGGTGCTCGTCGTCCTGGCTGTGGAGGTGCTGGAGCCCAAGGGATTCG
GCCGGATCCGCCTGCGCCGCATCCCCAAGGACTCCGCCACCCATGTGATCCCATTTGTGCAGGAGAACGTTGAGCCAGGCGCCCAGGTGCGCACCGATGG
CTCTGCGGCCTATCGTTCACTGAAGGATCTCGGCTATGAGCACAAGCGCACGGTGGTGCTCGGCTCGCAGGTGCCGGCCCATGTGTCGATGGCCGGCGTC
CACCGCGTGGCCGCACTGATCAAGCGCTGGATTCTGGGTACGCATCATGGCTCGGTGCAGCCCGAACATCTGGACGCCTATCTCGATGAGTTCGTCTTCC
GCTTCAACCGTCGCACCTCAAGCTCGCGCGGCATGTTGTTCTACCGACTCTTGCAGCAGGCCGTGGTCACCCCACCGGTGACCTATCAGCAGGTGATTCA
GGCGGGTGCAAAACAGCGCCGAAAAGGATAGGATAACTGTATATTCATCCAGTCACTCAGACCTTCTGGAGCTAAGAGGATACCCCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
990 bp329 aa421031+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVQILAPTAGKDYPQTWNEFLDWFSTEDDCLAYLERLRWGAGFVCPKCGSIGEAYRASRTRLMCRSCQHQTTVTAGTIFDKTRTPLRVWLAAAWYLTNQ
KQGVSALGLQRVLGLGSYQTAWTMLHRLRRAMVRPERDRLKGTVEVDETYLALSDRENPISPQGRKNSTSQVLVVLAVEVLEPKGFGRIRLRRIPKDSAT
HVIPFVQENVEPGAQVRTDGSAAYRSLKDLGYEHKRTVVLGSQVPAHVSMAGVHRVAALIKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQAVVTPPVTYQQVIQAGAKQRRKG

 

Blast result :
Comments
ISVapa1 is 92% aa similar to ISAisp1.
References