ISVvu6
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JQDT01000052 | ND | Vibrio vulnificus | Vibrio vulnificus 101/4 |
DNA section
IS Length : 1091 bp
Ends
IR Length : 22/27
IRL : CTTGGATTCAAGTACGAAGTGCGACACCTCTGAACATAAAAACAGTAAGG
IRR : CTTAGTATCAAGTTTGAAGTGCGACACTTTCTACAGATGCGCATGAATAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTTAGGCAT | NNNNNNNNNN | 0 |
DNA sequence
CTTGGATTCAAGTACGAAGTGCGACACCTCTGAACATAAAAACAGTAAGGTGCGATAATCATGAACTTTGCTCCCGCCAAGAAGTAAAAAACATGAAATA
CACACACCTCACTGAGAACGAAAGGTATATGATTTCTGCGCTCAGAAAGCAAGGAATTAGTACCGCTAAAATAGCTAAACAACTGGGGCGCCATAAAGCC
ACTATCTATCGAGAAATTGAACGCAATTGTCGTTACAACAAGTTCTTCGATAGGTACTCTTATCAACCACGGCGAGCACAGCAAATGGCTCGTAACCGGC
TGAGCCGCTCGCGCAGAAACAAGCGCTACAGCAAAAGCGACTTTAGGTTACCTGAGGCCTTGCTACGACTGGATTGGAGCCCTGACCAAATCGTCGGATA
TCTAAGAATGAGAGGCTATCCAACAATGAGCCACGAGCTCATTTATCAGCACATTTGGAACGACAAAGCTCTCGGGGGAACGCTATGGAAACACCTACGG
CAATCTTCCAAGAAAAGGCGTAAAAGGTACAACTCAAAAGACAGTCGAGGACGGCTTGCAAATAAGCGTCATATTACCGAAAGACCAGAAAACGCTGAGC
ATCGAAAAGAGCCTGGTCATTGGGAAATTGATACTGTCGTTGGCCGCGGAACCAAGCACTGTATCGTGACTTTAGTCGACAGAATGACTGGCTACACTTT
TATCGGGCAAATGGACGATAGAACAAGCGAGTCGCTCAACGTAAGAATGAGCAAAATCATGACCCGCTCTGACTTACCTTTTAAGACGATAACTTCGGAT
AACGGCACTGAATTTCATGGTTACGCACAACTAGAAAAACACCATAACTGTCTGTTTTACTTTGCAAATCCATACCACTCATGGGAGCGAGGCACTAATG
AAAACACCAATGGTTTGATACGACAATACTTACCAAAACGAACTTCCATGTCACACGTGACACAGAAGCTATGCAATGAAATTGCACACAAATTAAATAC
GCGCCCACGCAAAAGACTTGGGTATAGAACACCACTGGAGTATATTCATGCGCATCTGTAGAAAGTGTCGCACTTCAAACTTGATACTAAG
CACACACCTCACTGAGAACGAAAGGTATATGATTTCTGCGCTCAGAAAGCAAGGAATTAGTACCGCTAAAATAGCTAAACAACTGGGGCGCCATAAAGCC
ACTATCTATCGAGAAATTGAACGCAATTGTCGTTACAACAAGTTCTTCGATAGGTACTCTTATCAACCACGGCGAGCACAGCAAATGGCTCGTAACCGGC
TGAGCCGCTCGCGCAGAAACAAGCGCTACAGCAAAAGCGACTTTAGGTTACCTGAGGCCTTGCTACGACTGGATTGGAGCCCTGACCAAATCGTCGGATA
TCTAAGAATGAGAGGCTATCCAACAATGAGCCACGAGCTCATTTATCAGCACATTTGGAACGACAAAGCTCTCGGGGGAACGCTATGGAAACACCTACGG
CAATCTTCCAAGAAAAGGCGTAAAAGGTACAACTCAAAAGACAGTCGAGGACGGCTTGCAAATAAGCGTCATATTACCGAAAGACCAGAAAACGCTGAGC
ATCGAAAAGAGCCTGGTCATTGGGAAATTGATACTGTCGTTGGCCGCGGAACCAAGCACTGTATCGTGACTTTAGTCGACAGAATGACTGGCTACACTTT
TATCGGGCAAATGGACGATAGAACAAGCGAGTCGCTCAACGTAAGAATGAGCAAAATCATGACCCGCTCTGACTTACCTTTTAAGACGATAACTTCGGAT
AACGGCACTGAATTTCATGGTTACGCACAACTAGAAAAACACCATAACTGTCTGTTTTACTTTGCAAATCCATACCACTCATGGGAGCGAGGCACTAATG
AAAACACCAATGGTTTGATACGACAATACTTACCAAAACGAACTTCCATGTCACACGTGACACAGAAGCTATGCAATGAAATTGCACACAAATTAAATAC
GCGCCCACGCAAAAGACTTGGGTATAGAACACCACTGGAGTATATTCATGCGCATCTGTAGAAAGTGTCGCACTTCAAACTTGATACTAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 93 | 1061 | + | No |
Chemistry : DDE
ORF sequence :
MKYTHLTENERYMISALRKQGISTAKIAKQLGRHKATIYREIERNCRYNKFFDRYSYQPRRAQQMARNRLSRSRRNKRYSKSDFRLPEALLRLDWSPDQI
VGYLRMRGYPTMSHELIYQHIWNDKALGGTLWKHLRQSSKKRRKRYNSKDSRGRLANKRHITERPENAEHRKEPGHWEIDTVVGRGTKHCIVTLVDRMTG
YTFIGQMDDRTSESLNVRMSKIMTRSDLPFKTITSDNGTEFHGYAQLEKHHNCLFYFANPYHSWERGTNENTNGLIRQYLPKRTSMSHVTQKLCNEIAHK
LNTRPRKRLGYRTPLEYIHAHL
VGYLRMRGYPTMSHELIYQHIWNDKALGGTLWKHLRQSSKKRRKRYNSKDSRGRLANKRHITERPENAEHRKEPGHWEIDTVVGRGTKHCIVTLVDRMTG
YTFIGQMDDRTSESLNVRMSKIMTRSDLPFKTITSDNGTEFHGYAQLEKHHNCLFYFANPYHSWERGTNENTNGLIRQYLPKRTSMSHVTQKLCNEIAHK
LNTRPRKRLGYRTPLEYIHAHL
Blast result :
Comments
ISVvu6 is 96% aa similar to ISVa6.
References