ISPpu23
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KU130294 | ND | Pseudomonas putida | Pseudomonas putida 12969 plasmid p12969-DIM Pseudomonas putida 12969 plasmid p12969-2 |
DNA section
IS Length : 2620 bp
Ends
IR Length : 38/48
IRL : ACCCATTCCACGCGTATCCGACCACTGATTCCACGGTCATCCGGCCACTC
IRR : ACCTGTTCCACGGCCATCCGGCCGGGCAGTCGGAGCGCAGCGACGCAGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGAGATCGT | GATGGTT | GGCATCCTGC | 7 |
GCACTGGATGG | CTTCACCGC | CTTACTGTTGA | 9 |
DNA sequence
TGCGGATTCCACGGTCATCTGGCCACCCATTCCATAAGCATCTGACCACCGATTCCACGGTGATCCGGCCACCCATTCCACGCGTATCCGACCACTGATT
CCACGGTCATCCGGCCACTCAACCGGGCAGGCAGTAACGCAGGATTTCTTCACTACCATCGACCTCTTTTTCGAAGCAGAGAGGTCGTCGTGGAGCGTTT
ATCCATGCGTAAGATTCGCGAAGTACTTCGTCTCAAGTTCGAGGTCGGGCTATCGGCTCGCCAGATTGCCGTCAGCGTGCAGATCGGTCGTGTCACTGTC
GGCGATTACCTCAACCGCTTTGCCGCCAGCGGTCTAGCCTGGCCCTGTTCGTTGTCCGATTCCGAGCTGGAGCAGCAACTGTTCCCACCGCCCCCTGCGG
TGCCCAGCGAGCAACGGCCATTGCCCGATTGGTCTTGGGTGCATGCCGAGCTACGCCGGCCGGGCGTGACCTTGGCGCTGCTCTGGCAGGAGTATCGCCT
GAGCCAGCCGAAAGGCTTTCAGTACAGCTGGTTCTGCGAGCACTACCGAGCCTGGCAGGGCAAGCTGGACGTGGTGATGCGCCAGGAGCATCGCGTCGGT
GAGAAGCTGTTTGTCGACTACGCCGGGCAGACGGTGCCGGTGATCGACCGCCACAGCGGCGAGATCCGCCAGGCGCAGGTGTTCGTCGCGGTGCTTGGCG
CGTCCAGCTACACCTTCGCCGAAGCCACTTGGTCGCAGCAGTTACCGGACTGGCTGGGCTCCCATGTCCGCTGCTTCGCCTTTCTCGGCGGCGTGCCGGA
AATCGTGGTGCCGGACAACCTGCGAAGCGCGGTGAGTAAGAGCCATCGCTACGAGCCGGACATCAACCCGAGCTACCGCGATCTGGCCGAGCACTATGGC
GTGGCGGTGGTGCCGGCGCGGGCGCGTAAGCCGCGCGACAAGGCTAAGGCTGAGGTCGGCGTGCAGGTGGTCGAGCGCTGGATCCTCGCCGCGCTGAGGA
ACCGCCAGTTCTTCTCCCTGGACGAACTCAACAGCGCCATCGCCTTATTGCTGGAGCGGCTCAACCGACGACCGTTTCGCAAGCTGCCGGGCTCCCGGCA
CTCGGCCTTCGAAGCCCTGGATCGTCCAGCGCTGAGCCCACTGCCGGAGCAGCCCTACGTCTATGCCGAGTGGAAGAAGGCGCGCGTGCATATCGACTAT
CACGTCGAGGTCGATGGGCATTACTACTCAGTGCCCTACCAGTTGGTGAAGAAACAGCTGGAAGTACGGCTGACGGCGCGCACCGTCGAGTGCTTCCACG
CCAACCAGCGGGTGGCCAGCCACCTGCGCTCGCCACACAAGGGCCGGCATAGCACACAGACCGAGCACATGCCCAAGAGCCATCGCGAGCATGCCGAGTG
GACGCCGCAACGGTTGATCCGCTGGGCCGAGCAGACCGGGCCGCACACCGCCGGCGTGATCAGCCACATCCTCGAACGGCGCATCCACCCAACCCAAGGC
TACCGGGCCTGCCTGGGCATCCTGCGCCTGGGCAAGACCCATGGCGAAGTGCGCTTGGAGCTGGCCTGCCGACGCGCCCTCAGCCTCGGCGCGTGCAGCT
ACAAGAGCCTCGAATCGATCCTGCGCCAGGGGCTGGAAAACCTGCCGCTGGCCCAGCAGCACCTGCCCCTGCTGCCGGACGACCACGCCAACCTGCGCGG
CCCCGGCTACTACCACTGAACACAAGGAATCCCACCATGCTGCCCCATCCGACCTTGGACAAGCTCCAGACCCTGCGCCTGACCGGCATGCTCAAGGCAC
TCGCCGAGCAACTGAAAACCCCCGACATCGACAGCCTGAGCTTCGTGGAACGCCTCGGCCTGTTGGTCGACCGCGAACTGACCGAGCGCGACGACAAGCG
CCTCAGCAGCCGCCTGCGTCAGGCCCGGCTCAAGCACAACGCCTGCCTCGAAGACATCGACTACCGCAGCCCGCGCGGACTCGACAAGGCGCTGATCCTC
CAGCTGAGCAGCGGTCAGTGGTTACGCGACGGACTCAACCTGATTATCAACGGCCCGACTGGCGTCGGTAAGACCTGGCTGGCCTGCGCCCTGGCCCACC
AGGCCTGCCGAGAGGGTTACAGCGTGCGTTACCTGCGCTTGCCGCGCCTGTTGGAAGAGTTGGGCCTAGCCCACGGCGACGGGCGCTTCGCCAAGCTGAT
GAGCGGCTATGCCAAGACCGACCTGCTGATCCTTGATGACTGGGGTCTGGCCCCGTTCAACGCGGAACAGCGCCGCGACATGCTGGAGCTACTGGACGAC
CGCTACGGCCAGCGCTCGACCATCGTGACCAGCCAAATGCCAGTGGACAACTGGCACGAACTGATCGGTGATCCGACTCTGGCCGACGCCATCCTCGACC
GCCTGGTGCACAACGCTTATCGGATCAACCTCAAGGGTGAGTCGATGCGCAAACAGACGAAGAAATTGACGACACCGGGCACCTCAGACTAACAATGCCC
CCCCTGCGTCGCTGCGCTCCGACTGCCCGGCCGGATGGCCGTGGAACAGGTGGCCAGATGGCCGTGGAATGCCTGGCCAGATGAGAGCGGACTGGGTGGC
CGGATGGCGTGGAATCCGCA
CCACGGTCATCCGGCCACTCAACCGGGCAGGCAGTAACGCAGGATTTCTTCACTACCATCGACCTCTTTTTCGAAGCAGAGAGGTCGTCGTGGAGCGTTT
ATCCATGCGTAAGATTCGCGAAGTACTTCGTCTCAAGTTCGAGGTCGGGCTATCGGCTCGCCAGATTGCCGTCAGCGTGCAGATCGGTCGTGTCACTGTC
GGCGATTACCTCAACCGCTTTGCCGCCAGCGGTCTAGCCTGGCCCTGTTCGTTGTCCGATTCCGAGCTGGAGCAGCAACTGTTCCCACCGCCCCCTGCGG
TGCCCAGCGAGCAACGGCCATTGCCCGATTGGTCTTGGGTGCATGCCGAGCTACGCCGGCCGGGCGTGACCTTGGCGCTGCTCTGGCAGGAGTATCGCCT
GAGCCAGCCGAAAGGCTTTCAGTACAGCTGGTTCTGCGAGCACTACCGAGCCTGGCAGGGCAAGCTGGACGTGGTGATGCGCCAGGAGCATCGCGTCGGT
GAGAAGCTGTTTGTCGACTACGCCGGGCAGACGGTGCCGGTGATCGACCGCCACAGCGGCGAGATCCGCCAGGCGCAGGTGTTCGTCGCGGTGCTTGGCG
CGTCCAGCTACACCTTCGCCGAAGCCACTTGGTCGCAGCAGTTACCGGACTGGCTGGGCTCCCATGTCCGCTGCTTCGCCTTTCTCGGCGGCGTGCCGGA
AATCGTGGTGCCGGACAACCTGCGAAGCGCGGTGAGTAAGAGCCATCGCTACGAGCCGGACATCAACCCGAGCTACCGCGATCTGGCCGAGCACTATGGC
GTGGCGGTGGTGCCGGCGCGGGCGCGTAAGCCGCGCGACAAGGCTAAGGCTGAGGTCGGCGTGCAGGTGGTCGAGCGCTGGATCCTCGCCGCGCTGAGGA
ACCGCCAGTTCTTCTCCCTGGACGAACTCAACAGCGCCATCGCCTTATTGCTGGAGCGGCTCAACCGACGACCGTTTCGCAAGCTGCCGGGCTCCCGGCA
CTCGGCCTTCGAAGCCCTGGATCGTCCAGCGCTGAGCCCACTGCCGGAGCAGCCCTACGTCTATGCCGAGTGGAAGAAGGCGCGCGTGCATATCGACTAT
CACGTCGAGGTCGATGGGCATTACTACTCAGTGCCCTACCAGTTGGTGAAGAAACAGCTGGAAGTACGGCTGACGGCGCGCACCGTCGAGTGCTTCCACG
CCAACCAGCGGGTGGCCAGCCACCTGCGCTCGCCACACAAGGGCCGGCATAGCACACAGACCGAGCACATGCCCAAGAGCCATCGCGAGCATGCCGAGTG
GACGCCGCAACGGTTGATCCGCTGGGCCGAGCAGACCGGGCCGCACACCGCCGGCGTGATCAGCCACATCCTCGAACGGCGCATCCACCCAACCCAAGGC
TACCGGGCCTGCCTGGGCATCCTGCGCCTGGGCAAGACCCATGGCGAAGTGCGCTTGGAGCTGGCCTGCCGACGCGCCCTCAGCCTCGGCGCGTGCAGCT
ACAAGAGCCTCGAATCGATCCTGCGCCAGGGGCTGGAAAACCTGCCGCTGGCCCAGCAGCACCTGCCCCTGCTGCCGGACGACCACGCCAACCTGCGCGG
CCCCGGCTACTACCACTGAACACAAGGAATCCCACCATGCTGCCCCATCCGACCTTGGACAAGCTCCAGACCCTGCGCCTGACCGGCATGCTCAAGGCAC
TCGCCGAGCAACTGAAAACCCCCGACATCGACAGCCTGAGCTTCGTGGAACGCCTCGGCCTGTTGGTCGACCGCGAACTGACCGAGCGCGACGACAAGCG
CCTCAGCAGCCGCCTGCGTCAGGCCCGGCTCAAGCACAACGCCTGCCTCGAAGACATCGACTACCGCAGCCCGCGCGGACTCGACAAGGCGCTGATCCTC
CAGCTGAGCAGCGGTCAGTGGTTACGCGACGGACTCAACCTGATTATCAACGGCCCGACTGGCGTCGGTAAGACCTGGCTGGCCTGCGCCCTGGCCCACC
AGGCCTGCCGAGAGGGTTACAGCGTGCGTTACCTGCGCTTGCCGCGCCTGTTGGAAGAGTTGGGCCTAGCCCACGGCGACGGGCGCTTCGCCAAGCTGAT
GAGCGGCTATGCCAAGACCGACCTGCTGATCCTTGATGACTGGGGTCTGGCCCCGTTCAACGCGGAACAGCGCCGCGACATGCTGGAGCTACTGGACGAC
CGCTACGGCCAGCGCTCGACCATCGTGACCAGCCAAATGCCAGTGGACAACTGGCACGAACTGATCGGTGATCCGACTCTGGCCGACGCCATCCTCGACC
GCCTGGTGCACAACGCTTATCGGATCAACCTCAAGGGTGAGTCGATGCGCAAACAGACGAAGAAATTGACGACACCGGGCACCTCAGACTAACAATGCCC
CCCCTGCGTCGCTGCGCTCCGACTGCCCGGCCGGATGGCCGTGGAACAGGTGGCCAGATGGCCGTGGAATGCCTGGCCAGATGAGAGCGGACTGGGTGGC
CGGATGGCGTGGAATCCGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1515 bp | 504 aa | 205 | 1719 | + | No |
Chemistry : DDE
ORF sequence :
MRKIREVLRLKFEVGLSARQIAVSVQIGRVTVGDYLNRFAASGLAWPCSLSDSELEQQLFPPPPAVPSEQRPLPDWSWVHAELRRPGVTLALLWQEYRLS
QPKGFQYSWFCEHYRAWQGKLDVVMRQEHRVGEKLFVDYAGQTVPVIDRHSGEIRQAQVFVAVLGASSYTFAEATWSQQLPDWLGSHVRCFAFLGGVPEI
VVPDNLRSAVSKSHRYEPDINPSYRDLAEHYGVAVVPARARKPRDKAKAEVGVQVVERWILAALRNRQFFSLDELNSAIALLLERLNRRPFRKLPGSRHS
AFEALDRPALSPLPEQPYVYAEWKKARVHIDYHVEVDGHYYSVPYQLVKKQLEVRLTARTVECFHANQRVASHLRSPHKGRHSTQTEHMPKSHREHAEWT
PQRLIRWAEQTGPHTAGVISHILERRIHPTQGYRACLGILRLGKTHGEVRLELACRRALSLGACSYKSLESILRQGLENLPLAQQHLPLLPDDHANLRGP
GYYH
QPKGFQYSWFCEHYRAWQGKLDVVMRQEHRVGEKLFVDYAGQTVPVIDRHSGEIRQAQVFVAVLGASSYTFAEATWSQQLPDWLGSHVRCFAFLGGVPEI
VVPDNLRSAVSKSHRYEPDINPSYRDLAEHYGVAVVPARARKPRDKAKAEVGVQVVERWILAALRNRQFFSLDELNSAIALLLERLNRRPFRKLPGSRHS
AFEALDRPALSPLPEQPYVYAEWKKARVHIDYHVEVDGHYYSVPYQLVKKQLEVRLTARTVECFHANQRVASHLRSPHKGRHSTQTEHMPKSHREHAEWT
PQRLIRWAEQTGPHTAGVISHILERRIHPTQGYRACLGILRLGKTHGEVRLELACRRALSLGACSYKSLESILRQGLENLPLAQQHLPLLPDDHANLRGP
GYYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
656 bp | 251 aa | 1737 | 2392 | + | No |
AG : IS21 helper
ORF sequence :
MLPHPTLDKLQTLRLTGMLKALAEQLKTPDIDSLSFVERLGLLVDRELTERDDKRLSSRLRQARLKHNACLEDIDYRSPRGLDKALILQLSSGQWLRDGL
NLIINGPTGVGKTWLACALAHQACREGYSVRYLRLPRLLEELGLAHGDGRFAKLMSGYAKTDLLILDDWGLAPFNAEQRRDMLELLDDRYGQRSTIVTSQ
MPVDNWHELIGDPTLADAILDRLVHNAYRINLKGESMRKQTKKLTTPGTSD
NLIINGPTGVGKTWLACALAHQACREGYSVRYLRLPRLLEELGLAHGDGRFAKLMSGYAKTDLLILDDWGLAPFNAEQRRDMLELLDDRYGQRSTIVTSQ
MPVDNWHELIGDPTLADAILDRLVHNAYRINLKGESMRKQTKKLTTPGTSD
Blast result :
Comments
References
1] Dongsheng Zhou (2015) Direct submission
2] Sun,F., Zhou,D., Wang,Q., Feng,J., Feng,W., Luo,W., Liu,Y., Qiu,X., Yin,Z. and Xia,P. (2015) J. Antimicrob. Chemother. In press
2] Sun,F., Zhou,D., Wang,Q., Feng,J., Feng,W., Luo,W., Liu,Y., Qiu,X., Yin,Z. and Xia,P. (2015) J. Antimicrob. Chemother. In press