ISPpu25

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KU130294 ND Pseudomonas putida
Pseudomonas putida 12969 plasmid p12969-DIM
DNA section
IS Length : 1378 bp

Ends


IR Length : 13

IRL : TGCTGTAATGGACTCTCCCCGCGCCACGGTTCTATACCTAGAACTGCGGT
IRR : ----TATATGGACTCTCCCCACAAGTAGTGAGCAAAGCTTTCCTAACCCT

Insertion site


Left flankDirect repeatRight flankDR Length
TCGGCTTGAATGAGTTGTTA0

DNA sequence

TGCTGTAATGGACTCTCCCCGCGCCACGGTTCTATACCTAGAACTGCGGTGGCTTATCATTGGGAGAGACGTTATGAAGCGAATTGCGGTTGATCTGGCC
AAGTCCGTTTACCAAGTTGCCGAGAGTGTCCGTTCCGGCCAGGTGGTGCAGCGCAAGCGGCTGAACCGAGAGGCGTTTAGGCGATATATACAGGAGCAAG
CCGAGCCGGTCGAGTGGGTGATGGAAGCCTGTGGCACGGCTCACTACTGGGGGCGTGTCGCGCAAGCGCTGGGCCACCGGGTAAAACTGATCCATCCTCG
CTATGTACGGCCCTATCGTCGTCGCAACAAAACCGACCGTAACGACTGCGATGCCATGCTAGAAGCCTCGCGTTGCAACGATATTCATCCAGTCCCGGTG
AAAACCCAGGAGCAACAGCTGTTACAGCAACTTCACGGTATGCGCGAAACCTGGAAGAAGAGCCGTACCCAGCGCATCAACCTGCTGCGCGGTATTTTGC
GCGAGGCGGGTATCGAAGCCCCAACCGCCACTGCCGCGTTTATCCGTGCCGCCCATGAATTAGTTGATCGCCCAGAGATCGCGCCCTTGAGTCATCAACT
GCATATCGTCCTGGCGGAAATCAACCTGCACGAACAGTGCATGGTCGAGTGCGAACAGCAACTCAAGCGCTGGCATGCCGACGATGAAGTGGTACGTAAA
CTCGATGAGGTCAGCGGTATTGGTCTGCTGACCGCCAGCGCCCTGAAAACCGCAGTAGGCAAGCCCGAGCGTTTTACTAATGGCCGCCAACTCAGCGCTT
GGTTGGGCATGACACCGCGTGAATTCAGCAGCGGCGACCGACGTAAACTGGGCCACATCAGCCGACAGGGCAACGTCTATGTGCGCACCTTATTGATCCA
CGGTTCGCGAGCGGCCTTGCTGGCGGCACAGCGATGTCAGGCCCGCACGCCGGAGAAACTGACCCAGTTACAACGCTGGGCCGTCGAGACAGCGGCACGT
ATCGGCCACAACAAAGCAGCTGTGGCGCTGGCCAATAAATTGGTAAGGATTTGCTGGGCTGTGTGGTGCAACGAGCGGCGTTTCAGTGGTGACTGGCAAA
GCGTAAAGCCCGCCTGACGGCGGAGCAATCAGCAAGATGTGATGATTTTCTTGTGGTTGTGGTGAGCAGCAACACTGTCGAAACAGGCGAGTCCTGCAAC
GGAATAAGGCCGATAACAATCATGATCTTCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAGTGGCCAGGGCAGTAAAGCCCAAAATAG
GCCGGATATACGAATGCAACCGCGCTGACGACAGGGTTAGGAAAGCTTTGCTCACTACTTGTGGGGAGAGTCCATATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa741117+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKRIAVDLAKSVYQVAESVRSGQVVQRKRLNREAFRRYIQEQAEPVEWVMEACGTAHYWGRVAQALGHRVKLIHPRYVRPYRRRNKTDRNDCDAMLEASR
CNDIHPVPVKTQEQQLLQQLHGMRETWKKSRTQRINLLRGILREAGIEAPTATAAFIRAAHELVDRPEIAPLSHQLHIVLAEINLHEQCMVECEQQLKRW
HADDEVVRKLDEVSGIGLLTASALKTAVGKPERFTNGRQLSAWLGMTPREFSSGDRRKLGHISRQGNVYVRTLLIHGSRAALLAAQRCQARTPEKLTQLQ
RWAVETAARIGHNKAAVALANKLVRICWAVWCNERRFSGDWQSVKPA

 

Blast result :
Comments
ISPpu25 is 96% aa similar to ISPal19.
References
1] Dongsheng Zhou (2015) Direct submission
2] Sun,F., Zhou,D., Wang,Q., Feng,J., Feng,W., Luo,W., Liu,Y., Qiu,X., Yin,Z. and Xia,P. (2015) J. Antimicrob. Chemother. In press