ISPpu25
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KU130294 | ND | Pseudomonas putida | Pseudomonas putida 12969 plasmid p12969-DIM |
DNA section
IS Length : 1378 bp
Ends
IR Length : 13
IRL : TGCTGTAATGGACTCTCCCCGCGCCACGGTTCTATACCTAGAACTGCGGT
IRR : ----TATATGGACTCTCCCCACAAGTAGTGAGCAAAGCTTTCCTAACCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGGCTTGAA | TGAGTTGTTA | 0 |
DNA sequence
TGCTGTAATGGACTCTCCCCGCGCCACGGTTCTATACCTAGAACTGCGGTGGCTTATCATTGGGAGAGACGTTATGAAGCGAATTGCGGTTGATCTGGCC
AAGTCCGTTTACCAAGTTGCCGAGAGTGTCCGTTCCGGCCAGGTGGTGCAGCGCAAGCGGCTGAACCGAGAGGCGTTTAGGCGATATATACAGGAGCAAG
CCGAGCCGGTCGAGTGGGTGATGGAAGCCTGTGGCACGGCTCACTACTGGGGGCGTGTCGCGCAAGCGCTGGGCCACCGGGTAAAACTGATCCATCCTCG
CTATGTACGGCCCTATCGTCGTCGCAACAAAACCGACCGTAACGACTGCGATGCCATGCTAGAAGCCTCGCGTTGCAACGATATTCATCCAGTCCCGGTG
AAAACCCAGGAGCAACAGCTGTTACAGCAACTTCACGGTATGCGCGAAACCTGGAAGAAGAGCCGTACCCAGCGCATCAACCTGCTGCGCGGTATTTTGC
GCGAGGCGGGTATCGAAGCCCCAACCGCCACTGCCGCGTTTATCCGTGCCGCCCATGAATTAGTTGATCGCCCAGAGATCGCGCCCTTGAGTCATCAACT
GCATATCGTCCTGGCGGAAATCAACCTGCACGAACAGTGCATGGTCGAGTGCGAACAGCAACTCAAGCGCTGGCATGCCGACGATGAAGTGGTACGTAAA
CTCGATGAGGTCAGCGGTATTGGTCTGCTGACCGCCAGCGCCCTGAAAACCGCAGTAGGCAAGCCCGAGCGTTTTACTAATGGCCGCCAACTCAGCGCTT
GGTTGGGCATGACACCGCGTGAATTCAGCAGCGGCGACCGACGTAAACTGGGCCACATCAGCCGACAGGGCAACGTCTATGTGCGCACCTTATTGATCCA
CGGTTCGCGAGCGGCCTTGCTGGCGGCACAGCGATGTCAGGCCCGCACGCCGGAGAAACTGACCCAGTTACAACGCTGGGCCGTCGAGACAGCGGCACGT
ATCGGCCACAACAAAGCAGCTGTGGCGCTGGCCAATAAATTGGTAAGGATTTGCTGGGCTGTGTGGTGCAACGAGCGGCGTTTCAGTGGTGACTGGCAAA
GCGTAAAGCCCGCCTGACGGCGGAGCAATCAGCAAGATGTGATGATTTTCTTGTGGTTGTGGTGAGCAGCAACACTGTCGAAACAGGCGAGTCCTGCAAC
GGAATAAGGCCGATAACAATCATGATCTTCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAGTGGCCAGGGCAGTAAAGCCCAAAATAG
GCCGGATATACGAATGCAACCGCGCTGACGACAGGGTTAGGAAAGCTTTGCTCACTACTTGTGGGGAGAGTCCATATA
AAGTCCGTTTACCAAGTTGCCGAGAGTGTCCGTTCCGGCCAGGTGGTGCAGCGCAAGCGGCTGAACCGAGAGGCGTTTAGGCGATATATACAGGAGCAAG
CCGAGCCGGTCGAGTGGGTGATGGAAGCCTGTGGCACGGCTCACTACTGGGGGCGTGTCGCGCAAGCGCTGGGCCACCGGGTAAAACTGATCCATCCTCG
CTATGTACGGCCCTATCGTCGTCGCAACAAAACCGACCGTAACGACTGCGATGCCATGCTAGAAGCCTCGCGTTGCAACGATATTCATCCAGTCCCGGTG
AAAACCCAGGAGCAACAGCTGTTACAGCAACTTCACGGTATGCGCGAAACCTGGAAGAAGAGCCGTACCCAGCGCATCAACCTGCTGCGCGGTATTTTGC
GCGAGGCGGGTATCGAAGCCCCAACCGCCACTGCCGCGTTTATCCGTGCCGCCCATGAATTAGTTGATCGCCCAGAGATCGCGCCCTTGAGTCATCAACT
GCATATCGTCCTGGCGGAAATCAACCTGCACGAACAGTGCATGGTCGAGTGCGAACAGCAACTCAAGCGCTGGCATGCCGACGATGAAGTGGTACGTAAA
CTCGATGAGGTCAGCGGTATTGGTCTGCTGACCGCCAGCGCCCTGAAAACCGCAGTAGGCAAGCCCGAGCGTTTTACTAATGGCCGCCAACTCAGCGCTT
GGTTGGGCATGACACCGCGTGAATTCAGCAGCGGCGACCGACGTAAACTGGGCCACATCAGCCGACAGGGCAACGTCTATGTGCGCACCTTATTGATCCA
CGGTTCGCGAGCGGCCTTGCTGGCGGCACAGCGATGTCAGGCCCGCACGCCGGAGAAACTGACCCAGTTACAACGCTGGGCCGTCGAGACAGCGGCACGT
ATCGGCCACAACAAAGCAGCTGTGGCGCTGGCCAATAAATTGGTAAGGATTTGCTGGGCTGTGTGGTGCAACGAGCGGCGTTTCAGTGGTGACTGGCAAA
GCGTAAAGCCCGCCTGACGGCGGAGCAATCAGCAAGATGTGATGATTTTCTTGTGGTTGTGGTGAGCAGCAACACTGTCGAAACAGGCGAGTCCTGCAAC
GGAATAAGGCCGATAACAATCATGATCTTCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAGTGGCCAGGGCAGTAAAGCCCAAAATAG
GCCGGATATACGAATGCAACCGCGCTGACGACAGGGTTAGGAAAGCTTTGCTCACTACTTGTGGGGAGAGTCCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 74 | 1117 | + | No |
Chemistry : DEDD
ORF sequence :
MKRIAVDLAKSVYQVAESVRSGQVVQRKRLNREAFRRYIQEQAEPVEWVMEACGTAHYWGRVAQALGHRVKLIHPRYVRPYRRRNKTDRNDCDAMLEASR
CNDIHPVPVKTQEQQLLQQLHGMRETWKKSRTQRINLLRGILREAGIEAPTATAAFIRAAHELVDRPEIAPLSHQLHIVLAEINLHEQCMVECEQQLKRW
HADDEVVRKLDEVSGIGLLTASALKTAVGKPERFTNGRQLSAWLGMTPREFSSGDRRKLGHISRQGNVYVRTLLIHGSRAALLAAQRCQARTPEKLTQLQ
RWAVETAARIGHNKAAVALANKLVRICWAVWCNERRFSGDWQSVKPA
CNDIHPVPVKTQEQQLLQQLHGMRETWKKSRTQRINLLRGILREAGIEAPTATAAFIRAAHELVDRPEIAPLSHQLHIVLAEINLHEQCMVECEQQLKRW
HADDEVVRKLDEVSGIGLLTASALKTAVGKPERFTNGRQLSAWLGMTPREFSSGDRRKLGHISRQGNVYVRTLLIHGSRAALLAAQRCQARTPEKLTQLQ
RWAVETAARIGHNKAAVALANKLVRICWAVWCNERRFSGDWQSVKPA
Blast result :
Comments
ISPpu25 is 96% aa similar to ISPal19.
References
1] Dongsheng Zhou (2015) Direct submission
2] Sun,F., Zhou,D., Wang,Q., Feng,J., Feng,W., Luo,W., Liu,Y., Qiu,X., Yin,Z. and Xia,P. (2015) J. Antimicrob. Chemother. In press
2] Sun,F., Zhou,D., Wang,Q., Feng,J., Feng,W., Luo,W., Liu,Y., Qiu,X., Yin,Z. and Xia,P. (2015) J. Antimicrob. Chemother. In press