ISSbo1

  • Family IS91
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001062 ND Shigella boydii
Shigella flexneri G1663 plasmid pG1663
Shigella boydii CDC 3083-94 plasmid pBS512_211
Shigella flexneri plasmid pSF5
DNA section
IS Length : 1709 bp

Ends


oriIS : ACGTATAGGAAATTGAAAAACCAGACGATACCGCTGTCCGCGCCTTATGCCACGTGAGCTTTTCTGCTTTTCCCTCCACTCCGGTGTTTTCTCTCTCTGC II struct. : No
terIS : CTGGTGCTCCAGGTTGTGTGACATGGGAACTCATTCTGGATGGTTACTCTGAAAGCTCATATTCTGCCACACCCCGATTTGCAGCCGCCAGGCTGCCGTG II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGCCAGAATG GTACGTTC ACAGATAAAA
CCAAAGCACC GTTCGTTC AGGCATTTCAT

DNA sequence

ACGTATAGGAAATTGAAAAACCAGACGATACCGCTGTCCGCGCCTTATGCCACGTGAGCTTTTCTGCTTTTCCCTCCACTCCGGTGTTTTCTCTCTCTGC
ATGGTCGATTCTTATACCGCAACAGGCTGTTTTTTATACTCGCACCGATTCCCGGGCACACTTAGCCTGTGTCAGGCCGGCATATACCTCAGCAGACTGA
TATCCCGCGCGTTTTTCTTCAGCCCCTCCACATTCAGTCCCGCGATGGCCCGGCGGTATACCATCCGGCCGCCACACAGCACGCATTCGAACGAGTCACG
ACTCAGGAACTGTTTCACCATTTGTGCATAGCACACTTTCGCCACTGGTTCCTGTTTATCCATCCCCAGAGCACGGTACACCTGCGGCAGCTTCTCTCCA
CACACCCGGTTGGCAAGGAACCCGAAGTACCTCACCATCTTAAAAAACTTCTCCGGGATGTGCTGTTTCAGCCTCGCGACCAGCTCACGCTGTGTCAGCG
TTTCCGTCGCCGTTTCTCCCGTTTTGTGGTCCAGGTAACGGAAGTTCAGGCTCGCCCCTACGTTGTAATGTGCCAGCCGGGAGGCCGCTATCGGCGGCTT
CTTCAGATAACGACCCAGGTAGCGCGCCGTATTCCTCCCGCCGGCCGTTTTTTTCGACATGTACACATGCCAGTATTTTCCTCCGGCTTTCAGCACCAGG
CTTCTCCACTGTGATTCCGTCGTGATATGTGACAACGACTCCGGCATCGCCAGCCCCTCTGACCACGCTTTCAGAAGCAGCTGCCGCATATTCCACATCC
ACCGTGAACGCATCGAGTCTTTCAGGAAGCTCAGCTTTTTCCACTGACCATGCTTATTCAGACCTCCACAGGTTACAGACACATGTACATGCGGATGCCA
GTTGAGACGACGGCCATACGTGTGGATGGCGCAGAAGATACCGGGTTCCTGCCCCCGTTTCCGGGCGGCATACAGCAGATTCTCCACCGCCAGACGGCAC
ACGTCATTCAGCAGCCACCGGTTGCTTTCGAACACCGGCCACAGCGTGTCCGGCAGGGTGAAGACCAGGTGTACCCAGTCGCAGTCAGGAAGACGATTCA
GCTGTGTCGCTATCCACAGGTCTGTGGCCTTTTTTCCGCAGGACGGGCAGGCACGGCTGCCGCATGAGTTAGTGACGTATCTGACGTGGGGGCACTCAGG
TTTATCGCAGATGTATTCCTTCACTCCCAGTATCCGCGTGCCGCAGGCCAGCATTTTTGTGACAGCCTCAACCCCGATATCGCGCAGACCGCCCGCATCC
AGGAAGGACGTCCAGCACTGGTTGGCTGTGAACAGGCGTTTCAGCGGGCGGGGCTGAAAATCACCACCACTTCGGGTCATCCGCCTTCATCTCCGCTTCT
GTTTCGTATAAATCAAAACGACGGCAGGTATGGCAGAACGTGACGTATTCGTACGGTGAATCCGGGTACATTTTGTGGAAGGTTTCCCAGAAACAGACCG
TGCAGGAGGGATGACCGGTGATAAAGTCTGCAAATACGGACTTATAAGGGTGATTATTGGCTCTGGCGACGGCTTTCAGAACCTCTTTCACCATTCTGGT
GTGGACTTTCTGGTGCTCCAGGTTGTGTGACATGGGAACTCATTCTGGATGGTTACTCTGAAAGCTCATATTCTGCCACACCCCGATTTGCAGCCGCCAG
GCTGCCGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa1380172-No
ORF function : Transposase
Chemistry : Y2

ORF sequence :

MTRSGGDFQPRPLKRLFTANQCWTSFLDAGGLRDIGVEAVTKMLACGTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDC
DWVHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHPHVHVSVTCGGLNKHGQWKKLSFLKDSMRSRWMWNMRQ
LLLKAWSEGLAMPESLSHITTESQWRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNVGASLNFRYLDHKTGETATETLTQREL
VARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRALGMDKQEPVAKVCYAQMVKQFLSRDSFECVLCGGRMVYRRAIAGLNVEGLKKNARDISLLRYM
PA

 

Blast result :
Comments
ISSbo1 is 95% aa similar to IS1294.
References
1] Claude Parsot (2015) Direct submission.
2] Rasko,D.A., Rosovitz,M., Maurelli,A.T., Myers,G., Seshadri,R., Cer,R., Jiang,L., Ravel,J. and Sebastian,Y. (2008) Direct GenBank submission.