ISSbo1
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001062 | ND | Shigella boydii | Shigella flexneri G1663 plasmid pG1663 Shigella boydii CDC 3083-94 plasmid pBS512_211 Shigella flexneri plasmid pSF5 |
DNA section
IS Length : 1709 bp
Ends
oriIS : ACGTATAGGAAATTGAAAAACCAGACGATACCGCTGTCCGCGCCTTATGCCACGTGAGCTTTTCTGCTTTTCCCTCCACTCCGGTGTTTTCTCTCTCTGC II struct. : No
terIS : CTGGTGCTCCAGGTTGTGTGACATGGGAACTCATTCTGGATGGTTACTCTGAAAGCTCATATTCTGCCACACCCCGATTTGCAGCCGCCAGGCTGCCGTG II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGCCAGAATG GTAC | GTTC ACAGATAAAA | ||
CCAAAGCACC GTTC | GTTC AGGCATTTCAT |
DNA sequence
ACGTATAGGAAATTGAAAAACCAGACGATACCGCTGTCCGCGCCTTATGCCACGTGAGCTTTTCTGCTTTTCCCTCCACTCCGGTGTTTTCTCTCTCTGC
ATGGTCGATTCTTATACCGCAACAGGCTGTTTTTTATACTCGCACCGATTCCCGGGCACACTTAGCCTGTGTCAGGCCGGCATATACCTCAGCAGACTGA
TATCCCGCGCGTTTTTCTTCAGCCCCTCCACATTCAGTCCCGCGATGGCCCGGCGGTATACCATCCGGCCGCCACACAGCACGCATTCGAACGAGTCACG
ACTCAGGAACTGTTTCACCATTTGTGCATAGCACACTTTCGCCACTGGTTCCTGTTTATCCATCCCCAGAGCACGGTACACCTGCGGCAGCTTCTCTCCA
CACACCCGGTTGGCAAGGAACCCGAAGTACCTCACCATCTTAAAAAACTTCTCCGGGATGTGCTGTTTCAGCCTCGCGACCAGCTCACGCTGTGTCAGCG
TTTCCGTCGCCGTTTCTCCCGTTTTGTGGTCCAGGTAACGGAAGTTCAGGCTCGCCCCTACGTTGTAATGTGCCAGCCGGGAGGCCGCTATCGGCGGCTT
CTTCAGATAACGACCCAGGTAGCGCGCCGTATTCCTCCCGCCGGCCGTTTTTTTCGACATGTACACATGCCAGTATTTTCCTCCGGCTTTCAGCACCAGG
CTTCTCCACTGTGATTCCGTCGTGATATGTGACAACGACTCCGGCATCGCCAGCCCCTCTGACCACGCTTTCAGAAGCAGCTGCCGCATATTCCACATCC
ACCGTGAACGCATCGAGTCTTTCAGGAAGCTCAGCTTTTTCCACTGACCATGCTTATTCAGACCTCCACAGGTTACAGACACATGTACATGCGGATGCCA
GTTGAGACGACGGCCATACGTGTGGATGGCGCAGAAGATACCGGGTTCCTGCCCCCGTTTCCGGGCGGCATACAGCAGATTCTCCACCGCCAGACGGCAC
ACGTCATTCAGCAGCCACCGGTTGCTTTCGAACACCGGCCACAGCGTGTCCGGCAGGGTGAAGACCAGGTGTACCCAGTCGCAGTCAGGAAGACGATTCA
GCTGTGTCGCTATCCACAGGTCTGTGGCCTTTTTTCCGCAGGACGGGCAGGCACGGCTGCCGCATGAGTTAGTGACGTATCTGACGTGGGGGCACTCAGG
TTTATCGCAGATGTATTCCTTCACTCCCAGTATCCGCGTGCCGCAGGCCAGCATTTTTGTGACAGCCTCAACCCCGATATCGCGCAGACCGCCCGCATCC
AGGAAGGACGTCCAGCACTGGTTGGCTGTGAACAGGCGTTTCAGCGGGCGGGGCTGAAAATCACCACCACTTCGGGTCATCCGCCTTCATCTCCGCTTCT
GTTTCGTATAAATCAAAACGACGGCAGGTATGGCAGAACGTGACGTATTCGTACGGTGAATCCGGGTACATTTTGTGGAAGGTTTCCCAGAAACAGACCG
TGCAGGAGGGATGACCGGTGATAAAGTCTGCAAATACGGACTTATAAGGGTGATTATTGGCTCTGGCGACGGCTTTCAGAACCTCTTTCACCATTCTGGT
GTGGACTTTCTGGTGCTCCAGGTTGTGTGACATGGGAACTCATTCTGGATGGTTACTCTGAAAGCTCATATTCTGCCACACCCCGATTTGCAGCCGCCAG
GCTGCCGTG
ATGGTCGATTCTTATACCGCAACAGGCTGTTTTTTATACTCGCACCGATTCCCGGGCACACTTAGCCTGTGTCAGGCCGGCATATACCTCAGCAGACTGA
TATCCCGCGCGTTTTTCTTCAGCCCCTCCACATTCAGTCCCGCGATGGCCCGGCGGTATACCATCCGGCCGCCACACAGCACGCATTCGAACGAGTCACG
ACTCAGGAACTGTTTCACCATTTGTGCATAGCACACTTTCGCCACTGGTTCCTGTTTATCCATCCCCAGAGCACGGTACACCTGCGGCAGCTTCTCTCCA
CACACCCGGTTGGCAAGGAACCCGAAGTACCTCACCATCTTAAAAAACTTCTCCGGGATGTGCTGTTTCAGCCTCGCGACCAGCTCACGCTGTGTCAGCG
TTTCCGTCGCCGTTTCTCCCGTTTTGTGGTCCAGGTAACGGAAGTTCAGGCTCGCCCCTACGTTGTAATGTGCCAGCCGGGAGGCCGCTATCGGCGGCTT
CTTCAGATAACGACCCAGGTAGCGCGCCGTATTCCTCCCGCCGGCCGTTTTTTTCGACATGTACACATGCCAGTATTTTCCTCCGGCTTTCAGCACCAGG
CTTCTCCACTGTGATTCCGTCGTGATATGTGACAACGACTCCGGCATCGCCAGCCCCTCTGACCACGCTTTCAGAAGCAGCTGCCGCATATTCCACATCC
ACCGTGAACGCATCGAGTCTTTCAGGAAGCTCAGCTTTTTCCACTGACCATGCTTATTCAGACCTCCACAGGTTACAGACACATGTACATGCGGATGCCA
GTTGAGACGACGGCCATACGTGTGGATGGCGCAGAAGATACCGGGTTCCTGCCCCCGTTTCCGGGCGGCATACAGCAGATTCTCCACCGCCAGACGGCAC
ACGTCATTCAGCAGCCACCGGTTGCTTTCGAACACCGGCCACAGCGTGTCCGGCAGGGTGAAGACCAGGTGTACCCAGTCGCAGTCAGGAAGACGATTCA
GCTGTGTCGCTATCCACAGGTCTGTGGCCTTTTTTCCGCAGGACGGGCAGGCACGGCTGCCGCATGAGTTAGTGACGTATCTGACGTGGGGGCACTCAGG
TTTATCGCAGATGTATTCCTTCACTCCCAGTATCCGCGTGCCGCAGGCCAGCATTTTTGTGACAGCCTCAACCCCGATATCGCGCAGACCGCCCGCATCC
AGGAAGGACGTCCAGCACTGGTTGGCTGTGAACAGGCGTTTCAGCGGGCGGGGCTGAAAATCACCACCACTTCGGGTCATCCGCCTTCATCTCCGCTTCT
GTTTCGTATAAATCAAAACGACGGCAGGTATGGCAGAACGTGACGTATTCGTACGGTGAATCCGGGTACATTTTGTGGAAGGTTTCCCAGAAACAGACCG
TGCAGGAGGGATGACCGGTGATAAAGTCTGCAAATACGGACTTATAAGGGTGATTATTGGCTCTGGCGACGGCTTTCAGAACCTCTTTCACCATTCTGGT
GTGGACTTTCTGGTGCTCCAGGTTGTGTGACATGGGAACTCATTCTGGATGGTTACTCTGAAAGCTCATATTCTGCCACACCCCGATTTGCAGCCGCCAG
GCTGCCGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 1380 | 172 | - | No |
Chemistry : Y2
ORF sequence :
MTRSGGDFQPRPLKRLFTANQCWTSFLDAGGLRDIGVEAVTKMLACGTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDC
DWVHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHPHVHVSVTCGGLNKHGQWKKLSFLKDSMRSRWMWNMRQ
LLLKAWSEGLAMPESLSHITTESQWRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNVGASLNFRYLDHKTGETATETLTQREL
VARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRALGMDKQEPVAKVCYAQMVKQFLSRDSFECVLCGGRMVYRRAIAGLNVEGLKKNARDISLLRYM
PA
DWVHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHPHVHVSVTCGGLNKHGQWKKLSFLKDSMRSRWMWNMRQ
LLLKAWSEGLAMPESLSHITTESQWRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNVGASLNFRYLDHKTGETATETLTQREL
VARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRALGMDKQEPVAKVCYAQMVKQFLSRDSFECVLCGGRMVYRRAIAGLNVEGLKKNARDISLLRYM
PA
Blast result :
Comments
ISSbo1 is 95% aa similar to IS1294.
References
1] Claude Parsot (2015) Direct submission.
2] Rasko,D.A., Rosovitz,M., Maurelli,A.T., Myers,G., Seshadri,R., Cer,R., Jiang,L., Ravel,J. and Sebastian,Y. (2008) Direct GenBank submission.
2] Rasko,D.A., Rosovitz,M., Maurelli,A.T., Myers,G., Seshadri,R., Cer,R., Jiang,L., Ravel,J. and Sebastian,Y. (2008) Direct GenBank submission.