ISMyma11
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ANPL01000003 | ND | Mycobacterium marinum | Mycobacterium marinum Europe |
DNA section
IS Length : 1584 bp
Ends
IR Length : 16/17
IRL : CTTCGACCTGAAAAAGTCGGGCGTGGTTGCGCGCCTTGATGGCCTTTGAA
IRR : CTTCGACCTGAAAAATTGAGCGTTGCGGTGATGGCTTGATCTGGGGACCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTGCAATCCC | TAGCTA | GTCAATAGCT | 6 |
DNA sequence
CTTCGACCTGAAAAAGTCGGGCGTGGTTGCGCGCCTTGATGGCCTTTGAACTGGGACAATGTCCTCGAACCCTTGGTGAGAAGGATTCGAGGACATTGTG
TTTCGTACTGTAAATGATCAGCCGACGTTGTGGGATGCGATCCTGCCGGCCGAGCTGTTGGTGTTGCCCGCGGAACTTGCTCGGGTAGATGAGCTGTTGG
ATGATCCGGTTTTCTTCGCGCCCTTCGCGAGGTATTTCGACGCCCGGATCGGTCGGCCATCGATCCCGATGGAAACCTACTTGCGGCTAATGTTTCTCAA
GTTCCGCTACCGACTGGGCTTTGAGTCTTTGTGTCGGGAGGTGTCCGATTCGATCTCCTGGCAGCGGTTTTGCCGGATTCCGTTCGGTACCCGGGTGCCG
CACCCGACCACGTTGATGAAGATCACCACACGGTGTGGCGAGGACGCGGTCGCCGGGCTCACCGAGGCGCTGTTGGCCAAGGCGGCCAGCGCCAAGCTGC
TGCGGACCGATAAGGTCCGCGCCGACACCACCGTCATTGCCGCCGCGGTGGCCTACCCGACTGATTCGGGCCTGCTGGCAAAGGCCATCGGTTCGATGGC
ACGCACCGTCAAACGCATCAAGGCCGCGGGCGGGGCGGCTCGCACCCGGACCCGGGACCGGCGGCGCTCGGCCGGGCGGCGGGCCCGCTCTATTGCCGCC
AAGCTCAAACTGCGTGGCGAACAGCAGCGCGATGCGGCCCAGTCCGCGGTACGCCGGATCACCGGCGAACTGGCCGCGATCACCGAATCGGCCATCCGCG
AAGCCACCGCGGTGATCCGCAACGCGCGACGTGCACTGCGCACTGCGACCGGGCAGCGCAAAGGCCGGCTGCACCGGGCGATCAACCATCTGAACACCCT
TGTGGAACGCGCCGAACGTGTTGTGGCCCAAACCCTTAGCCGCCTGGCCGGGATAATGCCCGAGTCGGCGAGTCGGCTGGTGAGCTTCCATGATGTCGAT
GCCCGCCCAATCCGCAAAGGACGCCTCGGCAGGCCCGTGGAGTTCGGTTACAAGGCCCAGATCGTAGACAATATCGACGGGGTCATCCTCGACCACAACG
TCGAGGTAGGAAACCCCGCAGACGCCCCCCAACTGGCCCCGGCAATTGCACGGATCACCGCCCACACCGGGCGCACGCCTGGCGCGGTCACCGCCAACCG
CGGCTACGGCGAGGCATCGGTGGAACGCGACCTACCCGAACTCGGCGTACGTGCCGTGACCATCCCCCGCAAGAGTAAACCCAGCGCCACGCGCCGCGAG
TTCGAGCACCGGCGAGCGTTCCGCGAAAAAATCAAATAGCGGACCGGATCCGAAGGACGTATCAACCACATCAAACGCAGCTACGGCTGGAACCGCACCG
AACTCACCGGCATCACCGGCGCCCGAACCTGGTGCGGACACGGAGTCTTCGCCCACAACCTCGTCAAGATCGGCGCCCGCACAGCATGAACCAACACCCG
GGCCGACCCAGATGCAACCTACGGCCACAATCCCGGGTCCCCAGATCAAGCCATCACCGCAACGCTCAATTTTTCAGGTCGAAG
TTTCGTACTGTAAATGATCAGCCGACGTTGTGGGATGCGATCCTGCCGGCCGAGCTGTTGGTGTTGCCCGCGGAACTTGCTCGGGTAGATGAGCTGTTGG
ATGATCCGGTTTTCTTCGCGCCCTTCGCGAGGTATTTCGACGCCCGGATCGGTCGGCCATCGATCCCGATGGAAACCTACTTGCGGCTAATGTTTCTCAA
GTTCCGCTACCGACTGGGCTTTGAGTCTTTGTGTCGGGAGGTGTCCGATTCGATCTCCTGGCAGCGGTTTTGCCGGATTCCGTTCGGTACCCGGGTGCCG
CACCCGACCACGTTGATGAAGATCACCACACGGTGTGGCGAGGACGCGGTCGCCGGGCTCACCGAGGCGCTGTTGGCCAAGGCGGCCAGCGCCAAGCTGC
TGCGGACCGATAAGGTCCGCGCCGACACCACCGTCATTGCCGCCGCGGTGGCCTACCCGACTGATTCGGGCCTGCTGGCAAAGGCCATCGGTTCGATGGC
ACGCACCGTCAAACGCATCAAGGCCGCGGGCGGGGCGGCTCGCACCCGGACCCGGGACCGGCGGCGCTCGGCCGGGCGGCGGGCCCGCTCTATTGCCGCC
AAGCTCAAACTGCGTGGCGAACAGCAGCGCGATGCGGCCCAGTCCGCGGTACGCCGGATCACCGGCGAACTGGCCGCGATCACCGAATCGGCCATCCGCG
AAGCCACCGCGGTGATCCGCAACGCGCGACGTGCACTGCGCACTGCGACCGGGCAGCGCAAAGGCCGGCTGCACCGGGCGATCAACCATCTGAACACCCT
TGTGGAACGCGCCGAACGTGTTGTGGCCCAAACCCTTAGCCGCCTGGCCGGGATAATGCCCGAGTCGGCGAGTCGGCTGGTGAGCTTCCATGATGTCGAT
GCCCGCCCAATCCGCAAAGGACGCCTCGGCAGGCCCGTGGAGTTCGGTTACAAGGCCCAGATCGTAGACAATATCGACGGGGTCATCCTCGACCACAACG
TCGAGGTAGGAAACCCCGCAGACGCCCCCCAACTGGCCCCGGCAATTGCACGGATCACCGCCCACACCGGGCGCACGCCTGGCGCGGTCACCGCCAACCG
CGGCTACGGCGAGGCATCGGTGGAACGCGACCTACCCGAACTCGGCGTACGTGCCGTGACCATCCCCCGCAAGAGTAAACCCAGCGCCACGCGCCGCGAG
TTCGAGCACCGGCGAGCGTTCCGCGAAAAAATCAAATAGCGGACCGGATCCGAAGGACGTATCAACCACATCAAACGCAGCTACGGCTGGAACCGCACCG
AACTCACCGGCATCACCGGCGCCCGAACCTGGTGCGGACACGGAGTCTTCGCCCACAACCTCGTCAAGATCGGCGCCCGCACAGCATGAACCAACACCCG
GGCCGACCCAGATGCAACCTACGGCCACAATCCCGGGTCCCCAGATCAAGCCATCACCGCAACGCTCAATTTTTCAGGTCGAAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1242 bp | 413 aa | 98 | 1339 | + | No |
Chemistry : DDE
ORF sequence :
MFRTVNDQPTLWDAILPAELLVLPAELARVDELLDDPVFFAPFARYFDARIGRPSIPMETYLRLMFLKFRYRLGFESLCREVSDSISWQRFCRIPFGTRV
PHPTTLMKITTRCGEDAVAGLTEALLAKAASAKLLRTDKVRADTTVIAAAVAYPTDSGLLAKAIGSMARTVKRIKAAGGAARTRTRDRRRSAGRRARSIA
AKLKLRGEQQRDAAQSAVRRITGELAAITESAIREATAVIRNARRALRTATGQRKGRLHRAINHLNTLVERAERVVAQTLSRLAGIMPESASRLVSFHDV
DARPIRKGRLGRPVEFGYKAQIVDNIDGVILDHNVEVGNPADAPQLAPAIARITAHTGRTPGAVTANRGYGEASVERDLPELGVRAVTIPRKSKPSATRR
EFEHRRAFREKIK
PHPTTLMKITTRCGEDAVAGLTEALLAKAASAKLLRTDKVRADTTVIAAAVAYPTDSGLLAKAIGSMARTVKRIKAAGGAARTRTRDRRRSAGRRARSIA
AKLKLRGEQQRDAAQSAVRRITGELAAITESAIREATAVIRNARRALRTATGQRKGRLHRAINHLNTLVERAERVVAQTLSRLAGIMPESASRLVSFHDV
DARPIRKGRLGRPVEFGYKAQIVDNIDGVILDHNVEVGNPADAPQLAPAIARITAHTGRTPGAVTANRGYGEASVERDLPELGVRAVTIPRKSKPSATRR
EFEHRRAFREKIK
Blast result :
Comments
ISMyma11 is 87% aa similar to ISMav9.
References
1] ISfinder annotation (2015)
2] Kurokawa,S., Kabayama,J., Fukuyasu,T., Hwang,S.D., Nho,S.W., Park,C.I., Hikima,J.-I., Jung,T.S., Kondo,H., Hirono,I., Takeyama,H. and Aoki,T. (2012) Direct submission GenBank.
2] Kurokawa,S., Kabayama,J., Fukuyasu,T., Hwang,S.D., Nho,S.W., Park,C.I., Hikima,J.-I., Jung,T.S., Kondo,H., Hirono,I., Takeyama,H. and Aoki,T. (2012) Direct submission GenBank.