ISMyin1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002275 ND Mycobacterium indicus
Mycobacterium indicus pranii MTCC 9506
DNA section
IS Length : 1532 bp

Ends


IR Length : 17/18

IRL : CTTCGACCTGAAAAAGTCGGGGTGTGGCGGTGCCTGATCTGGTGTTTGTT
IRR : CTTCGACCTGAAAAAGGCTTGATGGTGACTGCGGCTTGGGCGTGGTCGTG

Insertion site


Left flankDirect repeatRight flankDR Length
CACAGCCGACTAGCTAGAGCGCCATC6

DNA sequence

CTTCGACCTGAAAAAGTCGGGGTGTGGCGGTGCCTGATCTGGTGTTTGTTTGAGGCGATGATGGCCTCGAACCCTTGGGCAAGAAGGGATCGAGGCCATC
GTGTTCAGAACTGTAAACGACCAACTGTCGCTATGGGAGGCAATCCTGCCTCCGGAGCTGCTGGTGTTGCCCGGTGAGTTGGCTCGGGTGGACGTGTTGC
TGGATGATCCGGCGTCCGTCGGTGCCGATGGAGACCTATCTACGGATGATGTTCTTGAAGTTCCGCTATCGGCTGGGTTTCGAGTCGTTGTGTCGCGAAG
TGGGCGATTCCATTTCTTGGCAACGGTTCTGCCGTATCCCTTTGGGCACGCGAGTGCCGCATCCGACCACGCTGATGAAGCTGACCAGCCGCTGCGGGGA
GGCCGCGGTGGCTGGGCTCAATGAGGCGTTGTTGACCAAGGCTGCTACGGCGAAGCTGGTCCGCACCGACAAGGTCCGCGCCGACACCACGGTCGTGGAG
GCCGCGGTGGCCTATCCGACTGATTCAGGCCTGTTGGCCAAAGCGGTTGGCGGCATCGCCGCGACGGTGGCGCGGATACAGGCCGCTGGTGGGGCCACCC
GCACCCGGGTGCGGGATCGCAGCCGTTCGGCAGGCCAGCGGGCCCGTTCGATCGCGGCCAAGTTGCGGCTACGTGGTGCGGCGGCCCGCGAGGAGGGCCA
GGCTGCGGTGCTGCGGATCACCGGCCAACTGGCAGATGTCGCCGAGGCCGCCATGACCGACGCCCAGGCCGTGGTGCGCAACGCCCGCCGTGGTCTATCT
CGTGCGACCGGCCGAAGTCGTGGGCGACTGCATCGAGCGATCAACGATCTGGCCACCCTGCTGACACACACTGAGCAGGTGGTGCGCCAGACCCGCAGCA
GATTGGCTGGGGTGATGCCGGATTCGATGAGTCGCATCGTCAGCTTCCACGACGTCGATGCCCGCCCAATCCGCAAGGGCCGACTCGGCAAACCGGTAGA
GTTCGGCTACAAAGCTCAGGTCATCGACAACGCCGACGGGATCATCCTCGACCATGCCGTGCACGTCGGGAACCCTGCCGACGCGCCCCAGCTGGCGCCG
GCGATCGCCCGCATCGCTGAGCGGATCGGGCGTGTGCCCACTGCGGTGACAGCCGATCGTGGCTATGGATACACCTCGGTAGAGATCGATCTGCACGACC
TCGGGGTGCGCCGTGTGGCCATCCCACGAGCCAGCAGACCAGGAGCTGCCCGGCGGGAGTTTGAACACCGAAAAGCGTTCCGCGCCAAGATCAAATGGCG
AACCGGATGCGAGGGCCGGATCAATCACCTCAAACGCAGCTATGGATGGAACCGCACCGAACTGACCACCCTCACCGGAGCACGCACCTGGTGCGGACAC
GGCGTCTTCGCCCATAACCTGGTCAAGATCAGCGCCCTGGCCGCCGGATAGCCAAATCCCGTCCCCACCCGGTCATCCACACCACGACCACGCCCAAGCC
GCAGTCACCATCAAGCCTTTTTCAGGTCGAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1248 bp415 aa2041451+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIRRPSVPMETYLRMMFLKFRYRLGFESLCREVGDSISWQRFCRIPLGTRVPHPTTLMKLTSRCGEAAVAGLNEALLTKAATAKLVRTDKVRADTTVVEA
AVAYPTDSGLLAKAVGGIAATVARIQAAGGATRTRVRDRSRSAGQRARSIAAKLRLRGAAAREEGQAAVLRITGQLADVAEAAMTDAQAVVRNARRGLSR
ATGRSRGRLHRAINDLATLLTHTEQVVRQTRSRLAGVMPDSMSRIVSFHDVDARPIRKGRLGKPVEFGYKAQVIDNADGIILDHAVHVGNPADAPQLAPA
IARIAERIGRVPTAVTADRGYGYTSVEIDLHDLGVRRVAIPRASRPGAARREFEHRKAFRAKIKWRTGCEGRINHLKRSYGWNRTELTTLTGARTWCGHG
VFAHNLVKISALAAG

 

Blast result :
Comments
ISMyin1 is 90% aa similar to ISMav9.
References
1] ISfinder annotation (2015)
2] Ahmed,N., Saini,V., Raghuvanshi,S., Khurana,J.P., Tyagi,A.K., Tyagi,A.K. and Hasnain,S.E. (2007) PLoS ONE 2 (10), E968.