ISMipa1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CANL01000033 ND Microthrix parvicella
Microthrix parvicella RN1
DNA section
IS Length : 1629 bp

Ends


IR Length : 17/19

IRL : CTTGCCCCTGAAATAGTCGTGAGATATGTCGTTCAGTGTTGGGGGTGGGT
IRR : CTTGCCCTGAAATAGTGGGTGTGAGGGCCTGGTTGATCAGTGAATTAGCC

Insertion site


Left flankDirect repeatRight flankDR Length
CGGTTTCGCATAGCTAGGACCTTCTG6

DNA sequence

CTTGCCCCTGAAATAGTCGTGAGATATGTCGTTCAGTGTTGGGGGTGGGTCGATTCGCGTGCGGGAATCTGACAGGCGATGATGGCTCCGATCACAGAAG
TGAAGCCCTGGAGATCGGAGCCATCATCGTGTTGCGTACCGTATGTCCTCAGCCGACGTTGTGGGAATCGTTGTTGCCACCGGAGGCGCTGGTGATGGCC
CCGGAACTGGTCGCGGTTGATCGCCTGTTGGACGACCCGAGGTTCTTTGAGCCGTTCCGTGGGTGGTTCGACCCGGACTTTGGTCGACCGTCGATCCCGA
TGGAGACGTTCCTGCGGTTGATGTTCTTGAAATACCGGTATCGGCTCGGGTTCGGGACGTTGTGCGCTGAGGTGTCCGACTCGTTGAGTTGGCTTCGGTT
CTGTCGGATCCCGCTCGGCCAGCGGGCACCTCACCCGTCCAGGTTGATGAAGATCACCAAACGGATCGGTCCGTCCACGATCGAAGAACTGAACGTTGCT
TTGGTCGGGAAGGCTGTCGAGGCAGGAGTCGTTGATGTGTCCTGGTTGCGGGCCGACGCCACCGTCGTGCCGGCCGACATCAAGTACCCAACCGATTCGG
GGATGCTGACCAAAGGCTGCGCATCGTTGGCACGGCTGGTGGGCCGGATCCGAGACGTCGGGGTGGCATCGCGGACCGTCTTTGATGACCCGACCGAAGC
CGCCCGACGTCACGCACACCGGGTTGCCTCCAAGCTCCGCAAGCGCACAGCCGAAGCCAAAGGCGAGGTGTTGGCGGTCACCGGTGAGCTGGCCGATCTG
GCCGAATCGGTGGTGGCACAGGCCAAACGGGTCCTGAAGAACGCCAAACGAGTCGAGGATCGGCCGGTGCGACGTCTGCGGTCAATGCTCGCCGATCTCG
AACATCTCATCGACGCGGTCGAACAGATCATCGCTCAGACACGGCTCCGGCTCGCTGGAGTCATGCCGGAGTCGAAGACACGACGGGTGTCGCTCTTCGA
CGGTGACGCACGCCCGATCCGGAAAGGATCCCTCGCGAAGCCGACCCAGTTCGGTTACACCGGCCAAGTCACCGACAACCCAGACGGGATCGTGTTGGAC
TACGAACTCGAAGCGGGGATCCCACCCGACGGCCCCCGCCTCGGACCGGCGATCGAGAGGATCATCGCAGCGGTCGGAGCAACTCCCGATGCTGTCACAG
CAGACCGCGGTTACGGCCTCGCATCGGTCGACACCCAGCTCGAAGATCTCGGTGTCGACCTGGTGGCGATTCCCCGCAAAGGTCAACCCGGCACTGCGCG
CCGCGACGCCCAATCCGAGGACCGGTTCGTCGAGTTGGTCAAGTGGCGCACCGGTTCCGAAGGGCGCATAGCCACCCTGAAACGGCAACACGGTTGGGAA
CGAGCCCGCAACCGCGGACTCGAAGGCGCACGGATCTGGTGCGGATGGGGCGTCCTGTCCCACAACCTGGTCAAGATCGCCGGCCTCACCCACTGACCCA
CCCCAAGGTCACACCCCCGAACATCATCCACGCCACTCTGACCGGCCGCGCCCACCAACCCGAACACCCCTCACCGTGAGGCTAATTCACTGATCAACCA
GGCCCTCACACCCACTATTTCAGGGCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1461 bp486 aa361496+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLGVGRFACGNLTGDDGSDHRSEALEIGAIIVLRTVCPQPTLWESLLPPEALVMAPELVAVDRLLDDPRFFEPFRGWFDPDFGRPSIPMETFLRLMFLKY
RYRLGFGTLCAEVSDSLSWLRFCRIPLGQRAPHPSRLMKITKRIGPSTIEELNVALVGKAVEAGVVDVSWLRADATVVPADIKYPTDSGMLTKGCASLAR
LVGRIRDVGVASRTVFDDPTEAARRHAHRVASKLRKRTAEAKGEVLAVTGELADLAESVVAQAKRVLKNAKRVEDRPVRRLRSMLADLEHLIDAVEQIIA
QTRLRLAGVMPESKTRRVSLFDGDARPIRKGSLAKPTQFGYTGQVTDNPDGIVLDYELEAGIPPDGPRLGPAIERIIAAVGATPDAVTADRGYGLASVDT
QLEDLGVDLVAIPRKGQPGTARRDAQSEDRFVELVKWRTGSEGRIATLKRQHGWERARNRGLEGARIWCGWGVLSHNLVKIAGLTH

 

Blast result :
Comments
ISMipa1 is 63% aa similar to ISRjo3.
References
1] ISfinder annotation (2015)
2] Jon McIlroy,S., Kristiansen,R., Albertsen,M., Michael Karst,S., Rossetti,S., Lund Nielsen,J., Tandoi,V., James Seviour,R. and Nielsen,P.H.(2013) ISME J 7 (6), 1161-1172.