ISMav9

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP012555 ND Mycobacterium avium
Mycobacterium avium subsp. hominissuis TH135
DNA section
IS Length : 1572 bp

Ends


IR Length : 16

IRL : CTTCGACCTGAAAAAGTCAGCGCGTTGATCCGGGGCGGATCGCGTTTAGC
IRR : CTTCGACCTGAAAAAGGATTGATGCTCGGGCGAGGTTGGTGGCGTTTGGG

Insertion site


Left flankDirect repeatRight flankDR Length
CTCCCGTACATAGATAAGCAGGCGCT6
CCGACCACAGTAGCTAGCACCTGACG6

DNA sequence

CTTCGACCTGAAAAAGTCAGCGCGTTGATCCGGGGCGGATCGCGTTTAGCTGGGAAGATGGCCTCAATGCCCTTGTTGCGGAAGGGATTGAGGCCATCGT
GTTTCGTACTGTAAACGATCAGCCAACGTTGTGGGATTCGATCCTGCCGTCGGAGTTGTTGGTGTTGCCCGATGAGTTGGCGCGAGTGGACGACCTGCTG
GACGATCCGGTGTTCTTCGCGCCGTTCGTGAGCTATTTCGATCCTGTGATCGGTCGTCCGTCGATTCCGATGGAGACCTATCTGCGGATGATGTTCTTGA
AGTTCCGCTACCGGCTGGGCTATGAGGCGCTGTGCCGCGAAGTGGGCGATTCCATCTCTTGGCAGCGTTTTTGTCGTATCCCGTTGGGGACACGGGTACC
GCACCCGACGACGTTGATGAAGCTGACGAGCCGGTGTGGGGACACCGCGGTGGCCGGCCTCAACGAGGCGTTGTTGGTCAAGGCAACCAGCCAGAAGCTG
CTGCGCACCGACAAGGTCCGTGCGGACACCACCGTGGTGGAAGCCGCCGTGAGCTATCCGACCGACTCGGGTCTGTTGGCCAAGGCGGTGGGGTCGATGA
CCCGCACCATCAAACGCATTCAGGGCGCTGGTGCAGCCACTCGGACTCGGGTGCGTGATCGGCGTCGTTCGGCCGGGCAGCGGGCCCGAGCGATCGCCGC
CAAGCTGCGACTTCGGGGTGCGGCTGCCCGGGAGGAGGGCCAGGCCGCGGTCTTGCGGATCACTGCAGAACTGGCCGGTATCGCTGAGACGGTGATGATC
GATGCCCAGGCGGTGGTGCGCAACGCCCGCCGAGCGCTGCGCACCGTGACCGGGCAGCGTCGAGGACAGCTGCGCCGCGCCGTTGACGAGCTGAAGGCCC
TGCTGGCGCGCACCGGCCGGGTCGTGGAGCAAAGCCGCAGCCGACTGGCCGGGGTGATGCCCGATTCGGCGACTCGGGTGGTCAGTTTCCATGACGTTGA
TGCCCGCCCGATCCGCAAAGGCAGACTCGGCAAGCCGGTGGAATTCGGCTACAAAGCCCAGGTCGTCGACAACGTCGACGGCGTGATCCTTGACCACAGT
GTGGAGATGGGAAACCCGGCAGACGCGCCGCAACTGGCGCCGGCGATCGCACGTATCACCGAGCGAATAGGCCGTGCTCCGACCGCGGTCACCGCTGATC
GCGGCTATGGCTACGCCACGGTGGAAACCGATCTGCACGACCTGGGTGTGCGCAATGTGGCGATCCCACGCGCCAGTAAACCCACCGCCACCCGACGCGA
GTTCGAGCACCGAAAAGCGTTTCGCGCCAAAATCAAATGGCGCACCGGATGCGAAGGCCGGATCAACCACCTCAAACGCAGCTACGGCTGGAACCGCACC
GAACTGACCACCCTGACCGGGGCGCGAACCTGGTGCGGACACGGTGTATTCGCCCACAACCTCGTCAAGATCAGCACCCTGGCCGCATGACCCCCACGAA
CCCGGGACTGGCCGACAGCCCACCCAAACGCCACCAACCTCGCCCGAGCATCAATCCTTTTTCAGGTCGAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1362 bp453 aa1291490+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MWDSILPSELLVLPDELARVDDLLDDPVFFAPFVSYFDPVIGRPSIPMETYLRMMFLKFRYRLGYEALCREVGDSISWQRFCRIPLGTRVPHPTTLMKLT
SRCGDTAVAGLNEALLVKATSQKLLRTDKVRADTTVVEAAVSYPTDSGLLAKAVGSMTRTIKRIQGAGAATRTRVRDRRRSAGQRARAIAAKLRLRGAAA
REEGQAAVLRITAELAGIAETVMIDAQAVVRNARRALRTVTGQRRGQLRRAVDELKALLARTGRVVEQSRSRLAGVMPDSATRVVSFHDVDARPIRKGRL
GKPVEFGYKAQVVDNVDGVILDHSVEMGNPADAPQLAPAIARITERIGRAPTAVTADRGYGYATVETDLHDLGVRNVAIPRASKPTATRREFEHRKAFRA
KIKWRTGCEGRINHLKRSYGWNRTELTTLTGARTWCGHGVFAHNLVKISTLAA

 

Blast result :
Comments
ISMav9 is 74% aa similar to ISRjo3.
References
1] ISfinder annotation (2015)
2] Uchiya,K., Takahashi,H., Yagi,T., Moriyama,M., Inagaki,T., Ichikawa,K., Nakagawa,T., Nikai,T. and Ogawa,K. (2013) PLoS ONE 8 (8), E71831.