ISSna1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JRKI01000034 | ND | Streptomyces natalensis | Streptomyces natalensis ATCC 27448 |
DNA section
IS Length : 1560 bp
Ends
IR Length : 15/16
IRL : CTTGCCCCTGAAGAAGTCTGGGTGACTGCCGGGGTGACCTTTGGGGAGAG
IRR : CTTGCCCCTGAAAAAGGGTTCAGCCTGGTGACGGGGTCGTCGTGCGGGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCAACCGCC | TAGCTA | GAGCCTGTCT | 6 |
DNA sequence
CTTGCCCCTGAAGAAGTCTGGGTGACTGCCGGGGTGACCTTTGGGGAGAGCTGGTGTGGGTTGTCGGCGGCCGCGACAGTTGAGTTGGGTCGTCGGCGGC
CGGGGGTGGTTGCGGTGTTGCGGGTCGCGGGGGTGCAGGACACGTGGTGGGAAGTGCTGCCGGAGCAGGCACGACAGCTGCCCGCCGAGCTGGCCAGGAT
CGATGCGTTCCTGGACGACGAGCGGTTCATTGCTCCCTGGCGGGCTGTATTCGCCCAGCGGCTGGGACGACCGTCGGTCCCGGTCGAGACGCTGCTGCGA
ATGCTGTATCTCAAGCACCGCTACCAGCTCGGGTACGAAACGCTGTGCCGTGAGGTCGCGGATTCCCTCAGCTGGCGGCGGTTCTGTCGCATCCCACTGA
CCTCCCCAGTGCCGCACCCGACCACGTTGATCAAACTGATGCGCCGCAGCGGCGCCCAGGCGGTGGAACAGCTCAACGCCGCGCTGCTGGGCAAGTTGGC
CGAGGACAAGCTGCTGAGGTGCCGCAAGCTGCGCATCGACACCACCGTCATCGAAGCCGACATCGACCACCCCACCGACGCCGACCTGCTGGCACACGGA
GTGCGCAAGCTGGGCCGGCTGGTGCGTCGGATCAAGGCCGCGGGCGCAGCCAAGCGCACCTGTTTCCGGGACCGCAGCCGATCCGCCGGGCGCCGCTTGA
AGGACATCTCCCGCACCCTGCGCAGGCGCACCGGCCAGGCCCTGGGCGAGATCGACCGGCTTACCGGCGAGGTCGCCGCCGTGGCCCGGGCGACCTTGCG
GGACGTGGCCGCGGTAGAGCGCAACGCCCGTCGCACGCTGGGCAAACGGCCCTCGGGACGCCTGACGCACCTGGTCGGTGAGCTGGCCCAGACGGTGGCG
GGCACGCAGCGCCTGCTGGAGCAGACCGCTCAGCGGCTGGCGGGCAACCGCACGATCCCCGGCCGGCTGGTCTCCCTGGCCGATCCCGATGCCCGGCCGA
TCCGCAAGGGCAAGCCCCAGCACCCGACCCAGTTCGGCTACACCGCCCTGGTGGCCGAGGACGAACGCGGCTTCGTCGTCGACCACCGCGTCCAGCGCGG
GAACCCGCCCGATGCACCGCAGCTGGTGCCGTCGGTGGAACGCGCCACCACACTGACCGGCCGCCCGCCCGGCACGGTCGTCGCCGACCGCGGCTTCGGC
ACTGCCGCCAACGACTGGGCCCTGACCGACCTCGGCGTGGCCCGGATCGGTCTTCAACGCGCCGGGAAGCCCGGAAAAGCCCGACGCGAGTACGAACGCA
GCCGCCCGTTCCGGCGCATGCGCAACTGGAGAGTCGGCGTCGAGGCCCGCATCAGCCACCTCAAGCGCAGCTTCGGTTTCCGCCGCACCCGCCTCCGCCG
CCTGAACGGCGCCCAGACCTGGGCCGGACTCGGCGTTTTCGCCTACAACCTCCACCGGATGACCGTCACCTGCCGGTGAAGAACGCACCACCGGCAAGCC
GACATACCGCAGCCCGCACGACGACCCCGTCACCAGGCTGAACCCTTTTTCAGGGGCAAG
CGGGGGTGGTTGCGGTGTTGCGGGTCGCGGGGGTGCAGGACACGTGGTGGGAAGTGCTGCCGGAGCAGGCACGACAGCTGCCCGCCGAGCTGGCCAGGAT
CGATGCGTTCCTGGACGACGAGCGGTTCATTGCTCCCTGGCGGGCTGTATTCGCCCAGCGGCTGGGACGACCGTCGGTCCCGGTCGAGACGCTGCTGCGA
ATGCTGTATCTCAAGCACCGCTACCAGCTCGGGTACGAAACGCTGTGCCGTGAGGTCGCGGATTCCCTCAGCTGGCGGCGGTTCTGTCGCATCCCACTGA
CCTCCCCAGTGCCGCACCCGACCACGTTGATCAAACTGATGCGCCGCAGCGGCGCCCAGGCGGTGGAACAGCTCAACGCCGCGCTGCTGGGCAAGTTGGC
CGAGGACAAGCTGCTGAGGTGCCGCAAGCTGCGCATCGACACCACCGTCATCGAAGCCGACATCGACCACCCCACCGACGCCGACCTGCTGGCACACGGA
GTGCGCAAGCTGGGCCGGCTGGTGCGTCGGATCAAGGCCGCGGGCGCAGCCAAGCGCACCTGTTTCCGGGACCGCAGCCGATCCGCCGGGCGCCGCTTGA
AGGACATCTCCCGCACCCTGCGCAGGCGCACCGGCCAGGCCCTGGGCGAGATCGACCGGCTTACCGGCGAGGTCGCCGCCGTGGCCCGGGCGACCTTGCG
GGACGTGGCCGCGGTAGAGCGCAACGCCCGTCGCACGCTGGGCAAACGGCCCTCGGGACGCCTGACGCACCTGGTCGGTGAGCTGGCCCAGACGGTGGCG
GGCACGCAGCGCCTGCTGGAGCAGACCGCTCAGCGGCTGGCGGGCAACCGCACGATCCCCGGCCGGCTGGTCTCCCTGGCCGATCCCGATGCCCGGCCGA
TCCGCAAGGGCAAGCCCCAGCACCCGACCCAGTTCGGCTACACCGCCCTGGTGGCCGAGGACGAACGCGGCTTCGTCGTCGACCACCGCGTCCAGCGCGG
GAACCCGCCCGATGCACCGCAGCTGGTGCCGTCGGTGGAACGCGCCACCACACTGACCGGCCGCCCGCCCGGCACGGTCGTCGCCGACCGCGGCTTCGGC
ACTGCCGCCAACGACTGGGCCCTGACCGACCTCGGCGTGGCCCGGATCGGTCTTCAACGCGCCGGGAAGCCCGGAAAAGCCCGACGCGAGTACGAACGCA
GCCGCCCGTTCCGGCGCATGCGCAACTGGAGAGTCGGCGTCGAGGCCCGCATCAGCCACCTCAAGCGCAGCTTCGGTTTCCGCCGCACCCGCCTCCGCCG
CCTGAACGGCGCCCAGACCTGGGCCGGACTCGGCGTTTTCGCCTACAACCTCCACCGGATGACCGTCACCTGCCGGTGAAGAACGCACCACCGGCAAGCC
GACATACCGCAGCCCGCACGACGACCCCGTCACCAGGCTGAACCCTTTTTCAGGGGCAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1365 bp | 454 aa | 115 | 1479 | + | No |
Chemistry : DDE
ORF sequence :
MLRVAGVQDTWWEVLPEQARQLPAELARIDAFLDDERFIAPWRAVFAQRLGRPSVPVETLLRMLYLKHRYQLGYETLCREVADSLSWRRFCRIPLTSPVP
HPTTLIKLMRRSGAQAVEQLNAALLGKLAEDKLLRCRKLRIDTTVIEADIDHPTDADLLAHGVRKLGRLVRRIKAAGAAKRTCFRDRSRSAGRRLKDISR
TLRRRTGQALGEIDRLTGEVAAVARATLRDVAAVERNARRTLGKRPSGRLTHLVGELAQTVAGTQRLLEQTAQRLAGNRTIPGRLVSLADPDARPIRKGK
PQHPTQFGYTALVAEDERGFVVDHRVQRGNPPDAPQLVPSVERATTLTGRPPGTVVADRGFGTAANDWALTDLGVARIGLQRAGKPGKARREYERSRPFR
RMRNWRVGVEARISHLKRSFGFRRTRLRRLNGAQTWAGLGVFAYNLHRMTVTCR
HPTTLIKLMRRSGAQAVEQLNAALLGKLAEDKLLRCRKLRIDTTVIEADIDHPTDADLLAHGVRKLGRLVRRIKAAGAAKRTCFRDRSRSAGRRLKDISR
TLRRRTGQALGEIDRLTGEVAAVARATLRDVAAVERNARRTLGKRPSGRLTHLVGELAQTVAGTQRLLEQTAQRLAGNRTIPGRLVSLADPDARPIRKGK
PQHPTQFGYTALVAEDERGFVVDHRVQRGNPPDAPQLVPSVERATTLTGRPPGTVVADRGFGTAANDWALTDLGVARIGLQRAGKPGKARREYERSRPFR
RMRNWRVGVEARISHLKRSFGFRRTRLRRLNGAQTWAGLGVFAYNLHRMTVTCR
Blast result :
Comments
ISSna1 is 61% aa similar to ISRjo3.
References
1] ISfinder annotation (2015)
2] Beites,T., Oliveira,P., Rioseras,B., Pires,S.D., Oliveira,R., Tamagnini,P., Moradas-Ferreira,P., Manteca,A. and Mendes,M.V. (2015) Sci Rep 5, 12887.
2] Beites,T., Oliveira,P., Rioseras,B., Pires,S.D., Oliveira,R., Tamagnini,P., Moradas-Ferreira,P., Manteca,A. and Mendes,M.V. (2015) Sci Rep 5, 12887.