ISSna1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JRKI01000034 ND Streptomyces natalensis
Streptomyces natalensis ATCC 27448
DNA section
IS Length : 1560 bp

Ends


IR Length : 15/16

IRL : CTTGCCCCTGAAGAAGTCTGGGTGACTGCCGGGGTGACCTTTGGGGAGAG
IRR : CTTGCCCCTGAAAAAGGGTTCAGCCTGGTGACGGGGTCGTCGTGCGGGCT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCAACCGCCTAGCTAGAGCCTGTCT6

DNA sequence

CTTGCCCCTGAAGAAGTCTGGGTGACTGCCGGGGTGACCTTTGGGGAGAGCTGGTGTGGGTTGTCGGCGGCCGCGACAGTTGAGTTGGGTCGTCGGCGGC
CGGGGGTGGTTGCGGTGTTGCGGGTCGCGGGGGTGCAGGACACGTGGTGGGAAGTGCTGCCGGAGCAGGCACGACAGCTGCCCGCCGAGCTGGCCAGGAT
CGATGCGTTCCTGGACGACGAGCGGTTCATTGCTCCCTGGCGGGCTGTATTCGCCCAGCGGCTGGGACGACCGTCGGTCCCGGTCGAGACGCTGCTGCGA
ATGCTGTATCTCAAGCACCGCTACCAGCTCGGGTACGAAACGCTGTGCCGTGAGGTCGCGGATTCCCTCAGCTGGCGGCGGTTCTGTCGCATCCCACTGA
CCTCCCCAGTGCCGCACCCGACCACGTTGATCAAACTGATGCGCCGCAGCGGCGCCCAGGCGGTGGAACAGCTCAACGCCGCGCTGCTGGGCAAGTTGGC
CGAGGACAAGCTGCTGAGGTGCCGCAAGCTGCGCATCGACACCACCGTCATCGAAGCCGACATCGACCACCCCACCGACGCCGACCTGCTGGCACACGGA
GTGCGCAAGCTGGGCCGGCTGGTGCGTCGGATCAAGGCCGCGGGCGCAGCCAAGCGCACCTGTTTCCGGGACCGCAGCCGATCCGCCGGGCGCCGCTTGA
AGGACATCTCCCGCACCCTGCGCAGGCGCACCGGCCAGGCCCTGGGCGAGATCGACCGGCTTACCGGCGAGGTCGCCGCCGTGGCCCGGGCGACCTTGCG
GGACGTGGCCGCGGTAGAGCGCAACGCCCGTCGCACGCTGGGCAAACGGCCCTCGGGACGCCTGACGCACCTGGTCGGTGAGCTGGCCCAGACGGTGGCG
GGCACGCAGCGCCTGCTGGAGCAGACCGCTCAGCGGCTGGCGGGCAACCGCACGATCCCCGGCCGGCTGGTCTCCCTGGCCGATCCCGATGCCCGGCCGA
TCCGCAAGGGCAAGCCCCAGCACCCGACCCAGTTCGGCTACACCGCCCTGGTGGCCGAGGACGAACGCGGCTTCGTCGTCGACCACCGCGTCCAGCGCGG
GAACCCGCCCGATGCACCGCAGCTGGTGCCGTCGGTGGAACGCGCCACCACACTGACCGGCCGCCCGCCCGGCACGGTCGTCGCCGACCGCGGCTTCGGC
ACTGCCGCCAACGACTGGGCCCTGACCGACCTCGGCGTGGCCCGGATCGGTCTTCAACGCGCCGGGAAGCCCGGAAAAGCCCGACGCGAGTACGAACGCA
GCCGCCCGTTCCGGCGCATGCGCAACTGGAGAGTCGGCGTCGAGGCCCGCATCAGCCACCTCAAGCGCAGCTTCGGTTTCCGCCGCACCCGCCTCCGCCG
CCTGAACGGCGCCCAGACCTGGGCCGGACTCGGCGTTTTCGCCTACAACCTCCACCGGATGACCGTCACCTGCCGGTGAAGAACGCACCACCGGCAAGCC
GACATACCGCAGCCCGCACGACGACCCCGTCACCAGGCTGAACCCTTTTTCAGGGGCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1365 bp454 aa1151479+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLRVAGVQDTWWEVLPEQARQLPAELARIDAFLDDERFIAPWRAVFAQRLGRPSVPVETLLRMLYLKHRYQLGYETLCREVADSLSWRRFCRIPLTSPVP
HPTTLIKLMRRSGAQAVEQLNAALLGKLAEDKLLRCRKLRIDTTVIEADIDHPTDADLLAHGVRKLGRLVRRIKAAGAAKRTCFRDRSRSAGRRLKDISR
TLRRRTGQALGEIDRLTGEVAAVARATLRDVAAVERNARRTLGKRPSGRLTHLVGELAQTVAGTQRLLEQTAQRLAGNRTIPGRLVSLADPDARPIRKGK
PQHPTQFGYTALVAEDERGFVVDHRVQRGNPPDAPQLVPSVERATTLTGRPPGTVVADRGFGTAANDWALTDLGVARIGLQRAGKPGKARREYERSRPFR
RMRNWRVGVEARISHLKRSFGFRRTRLRRLNGAQTWAGLGVFAYNLHRMTVTCR

 

Blast result :
Comments
ISSna1 is 61% aa similar to ISRjo3.
References
1] ISfinder annotation (2015)
2] Beites,T., Oliveira,P., Rioseras,B., Pires,S.D., Oliveira,R., Tamagnini,P., Moradas-Ferreira,P., Manteca,A. and Mendes,M.V. (2015) Sci Rep 5, 12887.