ISTsu1
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AENY02000002 | ND | Thermaerobacter subterraneus | Thermaerobacter subterraneus DSM 13965 |
DNA section
IS Length : 1315 bp
Ends
IR Length : 16/18
IRL : GCTCCCCTTCGGGTTGGACAAGAACCGGCTCGAAGGGAGGTCCGCTCACC
IRR : TCTCGCCTTCGGGTTGGAGGAATCACACAGCCAGCGCCTTCAGTGCCGTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAGGTCACCGGCG | GAAATTTTACAC | 0 |
DNA sequence
GCTCCCCTTCGGGTTGGACAAGAACCGGCTCGAAGGGAGGTCCGCTCACCGGTGACCGCTGAGTTCAAGATGGCACTTCTCGAGCTTTTGCGCAAATACC
AGGGGGAGCCGGAAGTCGATGCCCTGCGGGAAGGATTGCGCTGGCTGGCTCAGCAGCTCATGGAGCTCGAGGTCAGGGAGCGGATCGGCGCTCAGCGGTA
CGAACGCACGGAGACGCGGAAGACGTCTCGCAACGGCTACCGCTCGCGGCCCTGGGACACCCGTGTGGGGACGATCGAGCTGCGGATCCCCAAACTCCGC
CAAGGCAGCGACTTCCCCAGCCTGCTGGAGCCACGCCGGCGGGCGGAACGGGCCCTGGTCGCCGTGGTGCAGGAAGCGTATGTGCAGGGCGTCAGTACCC
GGAAGGTCGACGACCTGGTCCGGGCGTTGGGCCTGGACGGCATCAGCAAGAGTGAAGTCTCCCGGCTTTGTGCGGAACTGGACGAACAGATGGAGCGTTT
CCGGAACCGCCCCCTGGAGGGCGAGTACCCCTACCTATGGCTGGATGCCAAACCGATCAAGGTGCGGCAGGACCATCGCGTGGTGAACATGGCCGCGGTC
ATCGCCGTGGGGGTGACGCGAACCGGGCAGCTTGAGGTGCTGGGCTTTGACGTGGGAGCGGCCGAGACGTACGAGTTCTGGCTCGCGTTTCTCCGCAGCC
TGGTGGCCCGAGGGCTCAAGGGCGTTCGCCTGGTCATCTCGGATGCCCACGAGGGACTCAAGCGTGCCATCAGCGAGGTGCTGGCGGGCGCCAGCTGGCA
GCGGTGCCGGGTGCACTTCATGCGGAACCTGCTGGCCCGGGTGCCCAAGCACGCCCAGCCGATGGTGGCGGCCCTGGTGCGGACGATCTTCGCCCAGCCC
GACCTGGCATCCGCCCGGGAGCAACTCGAACATGTGGCCGCTAACCTGGACCAGCGATTTCCCCAAGCCGCCGCTCTGCTCCGTGACGCCGTGGAGGACG
TGCTGGCCTACATGGCGTTCCCGGCCGAGCACTGGCGGCGGATCCACTCAACGAACGTCCTGGAGCGGCTGAACCGGGAGCTCGCGCGGCGCTGCAACGT
GGTGGGGATCTGCCCGAACGTGGCCGCGGTCCTGCGGCTGCTGGGGGCTCTTCTGGAGGAGCAGCAGGATGAGTGGCTGGTCTCCCGGCGGTACTTCAGC
CTGGAGTCCATGGCCAAGATCGATGCGAACCCACCCCGCGAGGGCTCTCAGCGATCCGGCGACAGGACGGCACTGAAGGCGCTGGCTGTGTGATTCCTCC
AACCCGAAGGCGAGA
AGGGGGAGCCGGAAGTCGATGCCCTGCGGGAAGGATTGCGCTGGCTGGCTCAGCAGCTCATGGAGCTCGAGGTCAGGGAGCGGATCGGCGCTCAGCGGTA
CGAACGCACGGAGACGCGGAAGACGTCTCGCAACGGCTACCGCTCGCGGCCCTGGGACACCCGTGTGGGGACGATCGAGCTGCGGATCCCCAAACTCCGC
CAAGGCAGCGACTTCCCCAGCCTGCTGGAGCCACGCCGGCGGGCGGAACGGGCCCTGGTCGCCGTGGTGCAGGAAGCGTATGTGCAGGGCGTCAGTACCC
GGAAGGTCGACGACCTGGTCCGGGCGTTGGGCCTGGACGGCATCAGCAAGAGTGAAGTCTCCCGGCTTTGTGCGGAACTGGACGAACAGATGGAGCGTTT
CCGGAACCGCCCCCTGGAGGGCGAGTACCCCTACCTATGGCTGGATGCCAAACCGATCAAGGTGCGGCAGGACCATCGCGTGGTGAACATGGCCGCGGTC
ATCGCCGTGGGGGTGACGCGAACCGGGCAGCTTGAGGTGCTGGGCTTTGACGTGGGAGCGGCCGAGACGTACGAGTTCTGGCTCGCGTTTCTCCGCAGCC
TGGTGGCCCGAGGGCTCAAGGGCGTTCGCCTGGTCATCTCGGATGCCCACGAGGGACTCAAGCGTGCCATCAGCGAGGTGCTGGCGGGCGCCAGCTGGCA
GCGGTGCCGGGTGCACTTCATGCGGAACCTGCTGGCCCGGGTGCCCAAGCACGCCCAGCCGATGGTGGCGGCCCTGGTGCGGACGATCTTCGCCCAGCCC
GACCTGGCATCCGCCCGGGAGCAACTCGAACATGTGGCCGCTAACCTGGACCAGCGATTTCCCCAAGCCGCCGCTCTGCTCCGTGACGCCGTGGAGGACG
TGCTGGCCTACATGGCGTTCCCGGCCGAGCACTGGCGGCGGATCCACTCAACGAACGTCCTGGAGCGGCTGAACCGGGAGCTCGCGCGGCGCTGCAACGT
GGTGGGGATCTGCCCGAACGTGGCCGCGGTCCTGCGGCTGCTGGGGGCTCTTCTGGAGGAGCAGCAGGATGAGTGGCTGGTCTCCCGGCGGTACTTCAGC
CTGGAGTCCATGGCCAAGATCGATGCGAACCCACCCCGCGAGGGCTCTCAGCGATCCGGCGACAGGACGGCACTGAAGGCGCTGGCTGTGTGATTCCTCC
AACCCGAAGGCGAGA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1242 bp | 413 aa | 52 | 1293 | + | No |
Chemistry : DDE
ORF sequence :
MTAEFKMALLELLRKYQGEPEVDALREGLRWLAQQLMELEVRERIGAQRYERTETRKTSRNGYRSRPWDTRVGTIELRIPKLRQGSDFPSLLEPRRRAER
ALVAVVQEAYVQGVSTRKVDDLVRALGLDGISKSEVSRLCAELDEQMERFRNRPLEGEYPYLWLDAKPIKVRQDHRVVNMAAVIAVGVTRTGQLEVLGFD
VGAAETYEFWLAFLRSLVARGLKGVRLVISDAHEGLKRAISEVLAGASWQRCRVHFMRNLLARVPKHAQPMVAALVRTIFAQPDLASAREQLEHVAANLD
QRFPQAAALLRDAVEDVLAYMAFPAEHWRRIHSTNVLERLNRELARRCNVVGICPNVAAVLRLLGALLEEQQDEWLVSRRYFSLESMAKIDANPPREGSQ
RSGDRTALKALAV
ALVAVVQEAYVQGVSTRKVDDLVRALGLDGISKSEVSRLCAELDEQMERFRNRPLEGEYPYLWLDAKPIKVRQDHRVVNMAAVIAVGVTRTGQLEVLGFD
VGAAETYEFWLAFLRSLVARGLKGVRLVISDAHEGLKRAISEVLAGASWQRCRVHFMRNLLARVPKHAQPMVAALVRTIFAQPDLASAREQLEHVAANLD
QRFPQAAALLRDAVEDVLAYMAFPAEHWRRIHSTNVLERLNRELARRCNVVGICPNVAAVLRLLGALLEEQQDEWLVSRRYFSLESMAKIDANPPREGSQ
RSGDRTALKALAV
Blast result :
Comments
ISTsu1 is 76% aa similar to ISCth5.
References
1] ISfinder annotation (2015)
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J. and Klenk,H.-P. (2010) Direct submission GenBank.
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J. and Klenk,H.-P. (2010) Direct submission GenBank.