ISPsy35
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP011972 | ND | Pseudomonas syringae | Pseudomonas syringae pv. actinidiae ICMP 18884 |
DNA section
IS Length : 1701 bp
Ends
Left end : CCGTCCCGCCGCTACGCGCCGCGCTGTCGCGCAGCAAACTGGGTGCTCGACTCAGCTCCTGTTGTGATGCTGAGACTTTGAAAAGCAAAGAGCGGCTGCC
Right end : TGCGCAAGGCACGGAAACTGGGATTGGACTTGGTGAAGGCCTCTTAAATTGTGCAAAGAAATCAGAGACTTATTTTTTGTTTGATGAGAGTGAGCTTGCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCTGTGGGAG | CACGAAGGGGC | 0 |
DNA sequence
CCGTCCCGCCGCTACGCGCCGCGCTGTCGCGCAGCAAACTGGGTGCTCGACTCAGCTCCTGTTGTGATGCTGAGACTTTGAAAAGCAAAGAGCGGCTGCC
CCGTCAGGGGCAGCCGCTTTTTCGCTTTGCCAGGATTGAGGAGCGCGGGACAGAGGCCGGTACTCACATTGGTGTGACAGCACCCGCGTGGGAGAGTGGC
CCGCACGGTATCGGCGTGGAGTCCTTGTCGGCACGGCTAGCCGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCATCAT
CCTGCGAGGAATTAGCATGGCGCGCAACCAATCCAGACAGCGTTTTGAACTGGTCCATCCGCATTGTGCCGGTATCGACATCGGTAGCCGCGAACATTGG
GTCGCCGTTGATCGTGATCATGAGCAACCGGTACGCAGCTTTTCCACCTTCACCGACGACCTCATCAAGCTGGCCGATTGGCTTGAAACTCTGAAGATCG
AGGTCGTGGCCATGGAAGCCACTGGCGTTTACTGGATTCCACTGTTTGAGCTTCTTGATGCGCGGGGCTTCAAGGTCTATCTGGTCAACTCACGCGCGAC
GCGCCAGATTTCCGGTCGTAAATCCGATGTTCTCGATTGCCAGTGGATATGGCAACTGATGAGCCATGGCCTGCTACGCGGAGCGTTTCGCCCTGACGAT
GCCATCTGTTCCATGCGGGCGCTCATTCGCCAACGAGCCAGCAAAGTTCGCAATCAGGCCCAGACATTGAACCGCATGCAAAAAGCGCTGAGTCAGATGA
ACATCCAGCTCGCCAATGTCATCAGCGATATTTCAGGCGTGACCGGCATGAAAATTCTACGTGCGATCATTGCCGGCGAACGCGACCCGGCTGTTCTGGC
CGAGTTGACTGATCGGCGGATCAAGGCCAGCAAAGAGACCATCGCCCGCAGCCTGCACGGTAATTGGCGTCTGGAGCACCTGCATGCGCTCGGGCAAGAA
GTGGAGTGCTACGACTTCTTTGAGCAGCAGATTGGCGCGTGCGACAAGGCAATTACGGACGCGCTTAGTCAGTTGCCCGAGCGCGAGGAAGCCCCGCAAC
CCTCACGAAAAATTCTGCGTAGCCCTCACCGCTGCGCAGCAGATCAGGCGGCCCTGCATCAGTCACTTTGGCGCGTCATGGGTGTTGATCTCACCGCCAT
ACCGACCATCGGCGTCGATACGGCCCTGATCATTGCCGGCGAAATTGGGCCGGATCTGTCCCGATTTCCTACGATGGAGCATTTCTGCTCATGGCTGGGC
GTGGCACCACCGACACGGATTTCGGGTGGCCGTCAACTGTCAGGTAAAAGTCAGAAAACGCTCAACAATGCAGCTCAGGCGCTCAAGCAAGCGGCCTCTA
ACGCACGAAACGACAAAAGCTTCATCGGTGCCAGCCATAGAGCCCGACTGGCGCGGATGGACACCAGTTGCGCGATCAAGGCCACGGCTCACCAACTTGC
CCGGTTGATCTACGCGATGCTGACCAAGGGCCAGCCGTATGTTGAACAGGGGATCGAAGCGTTTGAAGAACGGAGCAAAGAAAAGCAGTACCGTGCCTTG
CTGCGCAAGGCACGGAAACTGGGATTGGACTTGGTGAAGGCCTCTTAAATTGTGCAAAGAAATCAGAGACTTATTTTTTGTTTGATGAGAGTGAGCTTGC
T
CCGTCAGGGGCAGCCGCTTTTTCGCTTTGCCAGGATTGAGGAGCGCGGGACAGAGGCCGGTACTCACATTGGTGTGACAGCACCCGCGTGGGAGAGTGGC
CCGCACGGTATCGGCGTGGAGTCCTTGTCGGCACGGCTAGCCGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCCATCAT
CCTGCGAGGAATTAGCATGGCGCGCAACCAATCCAGACAGCGTTTTGAACTGGTCCATCCGCATTGTGCCGGTATCGACATCGGTAGCCGCGAACATTGG
GTCGCCGTTGATCGTGATCATGAGCAACCGGTACGCAGCTTTTCCACCTTCACCGACGACCTCATCAAGCTGGCCGATTGGCTTGAAACTCTGAAGATCG
AGGTCGTGGCCATGGAAGCCACTGGCGTTTACTGGATTCCACTGTTTGAGCTTCTTGATGCGCGGGGCTTCAAGGTCTATCTGGTCAACTCACGCGCGAC
GCGCCAGATTTCCGGTCGTAAATCCGATGTTCTCGATTGCCAGTGGATATGGCAACTGATGAGCCATGGCCTGCTACGCGGAGCGTTTCGCCCTGACGAT
GCCATCTGTTCCATGCGGGCGCTCATTCGCCAACGAGCCAGCAAAGTTCGCAATCAGGCCCAGACATTGAACCGCATGCAAAAAGCGCTGAGTCAGATGA
ACATCCAGCTCGCCAATGTCATCAGCGATATTTCAGGCGTGACCGGCATGAAAATTCTACGTGCGATCATTGCCGGCGAACGCGACCCGGCTGTTCTGGC
CGAGTTGACTGATCGGCGGATCAAGGCCAGCAAAGAGACCATCGCCCGCAGCCTGCACGGTAATTGGCGTCTGGAGCACCTGCATGCGCTCGGGCAAGAA
GTGGAGTGCTACGACTTCTTTGAGCAGCAGATTGGCGCGTGCGACAAGGCAATTACGGACGCGCTTAGTCAGTTGCCCGAGCGCGAGGAAGCCCCGCAAC
CCTCACGAAAAATTCTGCGTAGCCCTCACCGCTGCGCAGCAGATCAGGCGGCCCTGCATCAGTCACTTTGGCGCGTCATGGGTGTTGATCTCACCGCCAT
ACCGACCATCGGCGTCGATACGGCCCTGATCATTGCCGGCGAAATTGGGCCGGATCTGTCCCGATTTCCTACGATGGAGCATTTCTGCTCATGGCTGGGC
GTGGCACCACCGACACGGATTTCGGGTGGCCGTCAACTGTCAGGTAAAAGTCAGAAAACGCTCAACAATGCAGCTCAGGCGCTCAAGCAAGCGGCCTCTA
ACGCACGAAACGACAAAAGCTTCATCGGTGCCAGCCATAGAGCCCGACTGGCGCGGATGGACACCAGTTGCGCGATCAAGGCCACGGCTCACCAACTTGC
CCGGTTGATCTACGCGATGCTGACCAAGGGCCAGCCGTATGTTGAACAGGGGATCGAAGCGTTTGAAGAACGGAGCAAAGAAAAGCAGTACCGTGCCTTG
CTGCGCAAGGCACGGAAACTGGGATTGGACTTGGTGAAGGCCTCTTAAATTGTGCAAAGAAATCAGAGACTTATTTTTTGTTTGATGAGAGTGAGCTTGC
T
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1332 bp | 443 aa | 317 | 1648 | + | No |
Chemistry : DEDD
ORF sequence :
MARNQSRQRFELVHPHCAGIDIGSREHWVAVDRDHEQPVRSFSTFTDDLIKLADWLETLKIEVVAMEATGVYWIPLFELLDARGFKVYLVNSRATRQISG
RKSDVLDCQWIWQLMSHGLLRGAFRPDDAICSMRALIRQRASKVRNQAQTLNRMQKALSQMNIQLANVISDISGVTGMKILRAIIAGERDPAVLAELTDR
RIKASKETIARSLHGNWRLEHLHALGQEVECYDFFEQQIGACDKAITDALSQLPEREEAPQPSRKILRSPHRCAADQAALHQSLWRVMGVDLTAIPTIGV
DTALIIAGEIGPDLSRFPTMEHFCSWLGVAPPTRISGGRQLSGKSQKTLNNAAQALKQAASNARNDKSFIGASHRARLARMDTSCAIKATAHQLARLIYA
MLTKGQPYVEQGIEAFEERSKEKQYRALLRKARKLGLDLVKAS
RKSDVLDCQWIWQLMSHGLLRGAFRPDDAICSMRALIRQRASKVRNQAQTLNRMQKALSQMNIQLANVISDISGVTGMKILRAIIAGERDPAVLAELTDR
RIKASKETIARSLHGNWRLEHLHALGQEVECYDFFEQQIGACDKAITDALSQLPEREEAPQPSRKILRSPHRCAADQAALHQSLWRVMGVDLTAIPTIGV
DTALIIAGEIGPDLSRFPTMEHFCSWLGVAPPTRISGGRQLSGKSQKTLNNAAQALKQAASNARNDKSFIGASHRARLARMDTSCAIKATAHQLARLIYA
MLTKGQPYVEQGIEAFEERSKEKQYRALLRKARKLGLDLVKAS
Blast result :
Comments
ISPsy35 is 86% aa similar to ISPpu9.
References
1] Margareth Butler (2015) Direct submission
2] McCann,H.C., Rikkerink,E.H., Bertels,F., Fiers,M., Lu,A., Rees-George,J., Andersen,M.T., Gleave,A.P., Haubold,B., Wohlers,M.W., Guttman,D.S., Wang,P.W., Straub,C., Vanneste,J.L., Rainey,P.B. and Templeton,M.D. (2013) PLoS Pathog. 9 (7), E1003503.
2] McCann,H.C., Rikkerink,E.H., Bertels,F., Fiers,M., Lu,A., Rees-George,J., Andersen,M.T., Gleave,A.P., Haubold,B., Wohlers,M.W., Guttman,D.S., Wang,P.W., Straub,C., Vanneste,J.L., Rainey,P.B. and Templeton,M.D. (2013) PLoS Pathog. 9 (7), E1003503.