ISVch9
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio cholerae | Vibrio cholerae N14-2106 |
DNA section
IS Length : 1195 bp
Ends
IR Length : 17/20
IRL : GGGAAGATGCGAATAAGTCCCTGATGTGAGATCATAGCTATATAGTAAAT
IRR : GGGAAACTGCGAACAAGTCCTGCAATTTGGGTATCGAGCGAGGTTTTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCCAAGCTT | TTACTCTCTT | 0 | |
GCCCAAGCTT | TAAGCCATAT | 0 | |
TTCATATCTT | TAAGCCATAT | 0 |
DNA sequence
GGGAAGATGCGAATAAGTCCCTGATGTGAGATCATAGCTATATAGTAAATCACAGCCATTACCGCCCATGTGCCAACAGTTAACTTTTGCCGATAGTGAG
TTTTCCAGCAAGCGCCGCCAGACCCGTAAAGAGATTTTCTTATCTCGGATGGACAACCTGTTACCATGGACTCAACTGCTGGAAGTGATTGAGCCATTTT
ATCCAAAAGTGGGCAATGGTCGTCGTCCCTATCCACTGGAAACAATGTTCCGCATTCACTGCATGCAGCAATGGTACTGTCTGAGTGATGAAGCGATGGA
AGATGCGCTTTACGAGATTGCTTCGATGCGACAGTTTGCACAACTGTCACTGGCTAAAGCCATTCCTGACCGCACCACCATTATGAATTTCCGGCACTTG
CTGGAAAAACACAAACTCACTCATAAGTTATTCAAAACGGTCAATCAATGGCTGTCGGATTGCGGTGTGATGATGACGCAAGGAACATTGGTAGATGCCA
CGATTATTCAAGCACCCAGCTCCACTAAAAATAAAAAGAATGAACGTGACCCAGACATGCATCAGACTAAAAAAGGCAATGAATGGTACTTCGGTATGAA
AGCTCACATTGGCGTGGATGCAAAGAGTGGCCTCACCCATACGCTGGTGACCACCGCCGCCAATGAACATGACCTGAACCAGTTGAAAAATCTGTTGCAT
GGCGACGAAGAATTCATCTCTGGCGATGCTGGTTATCAAGGCGCAGAAAAACGCGAAGAGCTGAGAGATACTAAGGTGGAATGGCTGATAGCAGAGCGTC
CCGGAAAAGTTCGGGCGCTGAAGAAGCATCCCCGCAAGAATAAAACCGCTATCAACATCGAGTATTTAAAAGCCAGCATTCGGGCGAAGGTAGAACACCC
GTTCCGGATCATCAAATGTCAGTTCGGCTTTATCAAAGCACGCTATAAAGGACTGACGAAAAATGACTCACAGTTAGCCATGCTATTCACCTTGGCAAAC
CTGTTTAAAGTAGACCAGATGTTACGACGACAGCCAAGATCTGTCTGAAATCCGGGAATAGCCCGGAATCAGGTGGAAATTCGGCCTAAAAAAGCAGTAT
ATTGGCCAAAATTGAACGGTTAGCATTCAAAAGTCAGGCGAGCCGCTCAAAACCTCGCTCGATACCCAAATTGCAGGACTTGTTCGCAGTTTCCC
TTTTCCAGCAAGCGCCGCCAGACCCGTAAAGAGATTTTCTTATCTCGGATGGACAACCTGTTACCATGGACTCAACTGCTGGAAGTGATTGAGCCATTTT
ATCCAAAAGTGGGCAATGGTCGTCGTCCCTATCCACTGGAAACAATGTTCCGCATTCACTGCATGCAGCAATGGTACTGTCTGAGTGATGAAGCGATGGA
AGATGCGCTTTACGAGATTGCTTCGATGCGACAGTTTGCACAACTGTCACTGGCTAAAGCCATTCCTGACCGCACCACCATTATGAATTTCCGGCACTTG
CTGGAAAAACACAAACTCACTCATAAGTTATTCAAAACGGTCAATCAATGGCTGTCGGATTGCGGTGTGATGATGACGCAAGGAACATTGGTAGATGCCA
CGATTATTCAAGCACCCAGCTCCACTAAAAATAAAAAGAATGAACGTGACCCAGACATGCATCAGACTAAAAAAGGCAATGAATGGTACTTCGGTATGAA
AGCTCACATTGGCGTGGATGCAAAGAGTGGCCTCACCCATACGCTGGTGACCACCGCCGCCAATGAACATGACCTGAACCAGTTGAAAAATCTGTTGCAT
GGCGACGAAGAATTCATCTCTGGCGATGCTGGTTATCAAGGCGCAGAAAAACGCGAAGAGCTGAGAGATACTAAGGTGGAATGGCTGATAGCAGAGCGTC
CCGGAAAAGTTCGGGCGCTGAAGAAGCATCCCCGCAAGAATAAAACCGCTATCAACATCGAGTATTTAAAAGCCAGCATTCGGGCGAAGGTAGAACACCC
GTTCCGGATCATCAAATGTCAGTTCGGCTTTATCAAAGCACGCTATAAAGGACTGACGAAAAATGACTCACAGTTAGCCATGCTATTCACCTTGGCAAAC
CTGTTTAAAGTAGACCAGATGTTACGACGACAGCCAAGATCTGTCTGAAATCCGGGAATAGCCCGGAATCAGGTGGAAATTCGGCCTAAAAAAGCAGTAT
ATTGGCCAAAATTGAACGGTTAGCATTCAAAAGTCAGGCGAGCCGCTCAAAACCTCGCTCGATACCCAAATTGCAGGACTTGTTCGCAGTTTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 68 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MCQQLTFADSEFSSKRRQTRKEIFLSRMDNLLPWTQLLEVIEPFYPKVGNGRRPYPLETMFRIHCMQQWYCLSDEAMEDALYEIASMRQFAQLSLAKAIP
DRTTIMNFRHLLEKHKLTHKLFKTVNQWLSDCGVMMTQGTLVDATIIQAPSSTKNKKNERDPDMHQTKKGNEWYFGMKAHIGVDAKSGLTHTLVTTAANE
HDLNQLKNLLHGDEEFISGDAGYQGAEKREELRDTKVEWLIAERPGKVRALKKHPRKNKTAINIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLTKND
SQLAMLFTLANLFKVDQMLRRQPRSV
DRTTIMNFRHLLEKHKLTHKLFKTVNQWLSDCGVMMTQGTLVDATIIQAPSSTKNKKNERDPDMHQTKKGNEWYFGMKAHIGVDAKSGLTHTLVTTAANE
HDLNQLKNLLHGDEEFISGDAGYQGAEKREELRDTKVEWLIAERPGKVRALKKHPRKNKTAINIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLTKND
SQLAMLFTLANLFKVDQMLRRQPRSV
Blast result :
Comments
ISVch9 is 92% aa similar to ISVch5.
References
1] David Boyd (2015) Direct submission.