ISVch9

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Vibrio cholerae
Vibrio cholerae N14-2106
DNA section
IS Length : 1195 bp

Ends


IR Length : 17/20

IRL : GGGAAGATGCGAATAAGTCCCTGATGTGAGATCATAGCTATATAGTAAAT
IRR : GGGAAACTGCGAACAAGTCCTGCAATTTGGGTATCGAGCGAGGTTTTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
GCCCAAGCTTTTACTCTCTT0
GCCCAAGCTTTAAGCCATAT0
TTCATATCTTTAAGCCATAT0

DNA sequence

GGGAAGATGCGAATAAGTCCCTGATGTGAGATCATAGCTATATAGTAAATCACAGCCATTACCGCCCATGTGCCAACAGTTAACTTTTGCCGATAGTGAG
TTTTCCAGCAAGCGCCGCCAGACCCGTAAAGAGATTTTCTTATCTCGGATGGACAACCTGTTACCATGGACTCAACTGCTGGAAGTGATTGAGCCATTTT
ATCCAAAAGTGGGCAATGGTCGTCGTCCCTATCCACTGGAAACAATGTTCCGCATTCACTGCATGCAGCAATGGTACTGTCTGAGTGATGAAGCGATGGA
AGATGCGCTTTACGAGATTGCTTCGATGCGACAGTTTGCACAACTGTCACTGGCTAAAGCCATTCCTGACCGCACCACCATTATGAATTTCCGGCACTTG
CTGGAAAAACACAAACTCACTCATAAGTTATTCAAAACGGTCAATCAATGGCTGTCGGATTGCGGTGTGATGATGACGCAAGGAACATTGGTAGATGCCA
CGATTATTCAAGCACCCAGCTCCACTAAAAATAAAAAGAATGAACGTGACCCAGACATGCATCAGACTAAAAAAGGCAATGAATGGTACTTCGGTATGAA
AGCTCACATTGGCGTGGATGCAAAGAGTGGCCTCACCCATACGCTGGTGACCACCGCCGCCAATGAACATGACCTGAACCAGTTGAAAAATCTGTTGCAT
GGCGACGAAGAATTCATCTCTGGCGATGCTGGTTATCAAGGCGCAGAAAAACGCGAAGAGCTGAGAGATACTAAGGTGGAATGGCTGATAGCAGAGCGTC
CCGGAAAAGTTCGGGCGCTGAAGAAGCATCCCCGCAAGAATAAAACCGCTATCAACATCGAGTATTTAAAAGCCAGCATTCGGGCGAAGGTAGAACACCC
GTTCCGGATCATCAAATGTCAGTTCGGCTTTATCAAAGCACGCTATAAAGGACTGACGAAAAATGACTCACAGTTAGCCATGCTATTCACCTTGGCAAAC
CTGTTTAAAGTAGACCAGATGTTACGACGACAGCCAAGATCTGTCTGAAATCCGGGAATAGCCCGGAATCAGGTGGAAATTCGGCCTAAAAAAGCAGTAT
ATTGGCCAAAATTGAACGGTTAGCATTCAAAAGTCAGGCGAGCCGCTCAAAACCTCGCTCGATACCCAAATTGCAGGACTTGTTCGCAGTTTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa681048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MCQQLTFADSEFSSKRRQTRKEIFLSRMDNLLPWTQLLEVIEPFYPKVGNGRRPYPLETMFRIHCMQQWYCLSDEAMEDALYEIASMRQFAQLSLAKAIP
DRTTIMNFRHLLEKHKLTHKLFKTVNQWLSDCGVMMTQGTLVDATIIQAPSSTKNKKNERDPDMHQTKKGNEWYFGMKAHIGVDAKSGLTHTLVTTAANE
HDLNQLKNLLHGDEEFISGDAGYQGAEKREELRDTKVEWLIAERPGKVRALKKHPRKNKTAINIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLTKND
SQLAMLFTLANLFKVDQMLRRQPRSV

 

Blast result :
Comments
ISVch9 is 92% aa similar to ISVch5.
References
1] David Boyd (2015) Direct submission.