ISPsy36
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP011972 | ND | Pseudomonas syringae | Pseudomonas syringae pv. actinidiae ICMP 18884 |
DNA section
IS Length : 1658 bp
Ends
IR Length : 17/18
IRL : CAGAGTGTGTAAAAACTCAAGGTAAACCTTTGCTATGATTTCCCAGGATT
IRR : CAGAGTGTGTAAAAACCCGACAGAATGTGGTCGGCGCGCAGCGCTTATTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGAGCAAGCCGTACCG | GGCC | AAGGATGGCCCGTTGC | 4 |
| GGCATCGGCGGTTTCTGGTC | GGCCACTGATGGCTCTCGCG | 0 | |
| CGGCGCGGCCCCGACA | GGCC | AAGGATGGCCCGTTGC | 4 |
| GCAACGGGCCATCCTT | GGCC | CGGTGCAGCTTGCTCG | 4 |
| CATCCCGCAGCCGGGTGGTC | GGCCATCGATGACTACAGCG | 0 | |
| GCAACGGGCCATCCTT | GGCC | CGGTGCAGCTAACTCG | 4 |
| CGAGCAAGCTGCACCG | GGCC | AGGGATGGCCCGTTGC | 4 |
| CGAGCAAGCTGCACCG | GGCC | GGCAGCGACCACTCCG | 4 |
| GCAACGGGCCATCCTT | GGCC | CGGTGCGGCTTGCTCG | 4 |
| GCAACGGGCCATCCTTGGCC | GGGCCGGTGCAGCTTGCTCG | 0 | |
| GGGGGCCGCCGCAACG | GGCC | ATCCTTGGCCCGGTGC | 4 |
| CGAGCAAGCCGCAACG | GGCC | AGGGATGGCCCGTTGC | 4 |
| GCAACGGGCCATCCTT | GGCC | CGGTGCAGCTTGCTCG | 4 |
| CGAGTTAGCTGCACCG | GGCC | ATGGATGGCCCGTTGC | 4 |
| CGAGCAAGCTGCGCCG | GGCC | AGGGATGGCCCGTTGC | 4 |
| GCAACGGGCCATCCTT | GGCC | CGGTGCAGCTTGCTCG | 4 |
| GCAACGGGCCATCCTT | GGCC | CGGTGCGGCTTGCTCG | 4 |
| AGCAGGGCACCGAACA | GGCC | GAGAGCGGCTGCCAGC | 4 |
| AAGACATCAAGGCGCT | GGCC | CTTCGCGGCCTGTCTG | 4 |
DNA sequence
CAGAGTGTGTAAAAACTCAAGGTAAACCTTTGCTATGATTTCCCAGGATTTCATCGCAAGGGTTGCCCATGAAACGCTTCATCCAAGGCGAACACCGAGG
TCAAAGTACCTTGCTTCCAGAGAGTCTCGACGATTACGTCAGCGACACCAATCCGGTGCGCGTTGTAGATGTCTTTGTGGATGAACTCGACCTGATCACC
TTGGGTTTTGAAAGCGCTGTCCCCGCTGAAACGGGCCGACCGGCTTACCATCCTGCAGTCATGCTGAAGATCTACATCTACGGCTATCTCAACCGGATCC
AGTCAAGCCGACGCCTTGAGCGCGAGGCGCAGCGCAACGTCGAACTGATGTGGCTGACCGGTCGCCTGATGCCGGATTTCAAGACCATCGCCAACTTTCG
CAAAGACAACGCAAAGGGCATTCGAGGAGTCTGTCGGCAGTTTGTCGTGCTGTGTCAACAATTGGGGCTTTTCTCGGAACATTTCGTTGCCATCGATGGC
AGTAAATTCAAAGCGGTGAATCACCGTGACCGCAATTTCACCAGCGCCAAATTGAAGCGGCGAATGGAAGAAATCGAGTCGAGCATCGCTCGTTATCTAA
CGGCGCTGGATACCGAGGATCGGCAAGAGCCCAAGACCGCGGGCCCCAAGGTCGGCCTGGAGGAGAAAATCGCCAAATTGAAGGAGCAAATGAAGGCGTT
GCAGGCCATTGAGGTACAGCTTGAAGAATCCCCGGACAAACAAATTTCGCTGACCGATCCGGACGCGCGCTCAATGATGAGCAGTGGCGGAAAAGGTATC
GTGGGTTACAACGTACAGACCGCGGTGGATACCAAGCATCATTTGATCGTCGCGCACGAGGTGACCAATGTCGGTCACGACCGTGATCAACTTAGCTCGA
TGGCCCAGCAGGCCCGTGAGGCGATGCAAGTCGAATCGTTGTCGGTGGTGGCAGACCGTGGGTATTACAAAAGCGGAGAAATCCTGGCCTGTCATGAGGC
AGGGATCACAGCTTATGTGCCGAAAACGCTGAGCTCGCGGGCCAAATTTGATGGCCGCTTCGGCAATGAAGAGTTTGTTTACGATGCGGACAACGATGAG
TACGTCTGTCCCGCCAATCAAGTGCTGATCTGGCGCAACTCTTACGTCGACAAGGGCAAGAAGCTGGACGTTTACTGGCGCTCCAACTGCCAAGCCTGCT
CGATAAAGGCGCAATGCACACCGGCCCGAGAGAGAAAGGTTCGGCGCTGGGAACATGAGACAGTGCTAGAAGAAATGCAGGTCCGCCTGGCCAACGCGCC
GCAGGTAATGACCCTGCGCAAGCAGACCGTGGAGCACCCCTTCGGGACTCTCAAGCAGTGGATGGGTGCAACGCACTTTCTGACGCGTCGGCTTGGCGGA
GTGAGTACCGAAATGAGTTTGAACGTGCTGGCTTATAACCTGAAGCGGGTGATGAAAATCATCGGCATGCCTGACTTGATGAGAGCCTTAGCGCCCTGAA
AAGGTCGTTTTTGCTGCTATTTATCAAGCCAGGTACGCCTTCTCAAAGCTAATCAGGGCCTCCGTAGCTCAACCAGAAGCTCTTTGGCGCTAAATACCCG
ACAACCGACAATAAGCGCTGCGCGCCGACCACATTCTGTCGGGTTTTTACACACTCTG
TCAAAGTACCTTGCTTCCAGAGAGTCTCGACGATTACGTCAGCGACACCAATCCGGTGCGCGTTGTAGATGTCTTTGTGGATGAACTCGACCTGATCACC
TTGGGTTTTGAAAGCGCTGTCCCCGCTGAAACGGGCCGACCGGCTTACCATCCTGCAGTCATGCTGAAGATCTACATCTACGGCTATCTCAACCGGATCC
AGTCAAGCCGACGCCTTGAGCGCGAGGCGCAGCGCAACGTCGAACTGATGTGGCTGACCGGTCGCCTGATGCCGGATTTCAAGACCATCGCCAACTTTCG
CAAAGACAACGCAAAGGGCATTCGAGGAGTCTGTCGGCAGTTTGTCGTGCTGTGTCAACAATTGGGGCTTTTCTCGGAACATTTCGTTGCCATCGATGGC
AGTAAATTCAAAGCGGTGAATCACCGTGACCGCAATTTCACCAGCGCCAAATTGAAGCGGCGAATGGAAGAAATCGAGTCGAGCATCGCTCGTTATCTAA
CGGCGCTGGATACCGAGGATCGGCAAGAGCCCAAGACCGCGGGCCCCAAGGTCGGCCTGGAGGAGAAAATCGCCAAATTGAAGGAGCAAATGAAGGCGTT
GCAGGCCATTGAGGTACAGCTTGAAGAATCCCCGGACAAACAAATTTCGCTGACCGATCCGGACGCGCGCTCAATGATGAGCAGTGGCGGAAAAGGTATC
GTGGGTTACAACGTACAGACCGCGGTGGATACCAAGCATCATTTGATCGTCGCGCACGAGGTGACCAATGTCGGTCACGACCGTGATCAACTTAGCTCGA
TGGCCCAGCAGGCCCGTGAGGCGATGCAAGTCGAATCGTTGTCGGTGGTGGCAGACCGTGGGTATTACAAAAGCGGAGAAATCCTGGCCTGTCATGAGGC
AGGGATCACAGCTTATGTGCCGAAAACGCTGAGCTCGCGGGCCAAATTTGATGGCCGCTTCGGCAATGAAGAGTTTGTTTACGATGCGGACAACGATGAG
TACGTCTGTCCCGCCAATCAAGTGCTGATCTGGCGCAACTCTTACGTCGACAAGGGCAAGAAGCTGGACGTTTACTGGCGCTCCAACTGCCAAGCCTGCT
CGATAAAGGCGCAATGCACACCGGCCCGAGAGAGAAAGGTTCGGCGCTGGGAACATGAGACAGTGCTAGAAGAAATGCAGGTCCGCCTGGCCAACGCGCC
GCAGGTAATGACCCTGCGCAAGCAGACCGTGGAGCACCCCTTCGGGACTCTCAAGCAGTGGATGGGTGCAACGCACTTTCTGACGCGTCGGCTTGGCGGA
GTGAGTACCGAAATGAGTTTGAACGTGCTGGCTTATAACCTGAAGCGGGTGATGAAAATCATCGGCATGCCTGACTTGATGAGAGCCTTAGCGCCCTGAA
AAGGTCGTTTTTGCTGCTATTTATCAAGCCAGGTACGCCTTCTCAAAGCTAATCAGGGCCTCCGTAGCTCAACCAGAAGCTCTTTGGCGCTAAATACCCG
ACAACCGACAATAAGCGCTGCGCGCCGACCACATTCTGTCGGGTTTTTACACACTCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1431 bp | 476 aa | 69 | 1499 | + | No |
Chemistry : DDE
ORF sequence :
MKRFIQGEHRGQSTLLPESLDDYVSDTNPVRVVDVFVDELDLITLGFESAVPAETGRPAYHPAVMLKIYIYGYLNRIQSSRRLEREAQRNVELMWLTGRL
MPDFKTIANFRKDNAKGIRGVCRQFVVLCQQLGLFSEHFVAIDGSKFKAVNHRDRNFTSAKLKRRMEEIESSIARYLTALDTEDRQEPKTAGPKVGLEEK
IAKLKEQMKALQAIEVQLEESPDKQISLTDPDARSMMSSGGKGIVGYNVQTAVDTKHHLIVAHEVTNVGHDRDQLSSMAQQAREAMQVESLSVVADRGYY
KSGEILACHEAGITAYVPKTLSSRAKFDGRFGNEEFVYDADNDEYVCPANQVLIWRNSYVDKGKKLDVYWRSNCQACSIKAQCTPARERKVRRWEHETVL
EEMQVRLANAPQVMTLRKQTVEHPFGTLKQWMGATHFLTRRLGGVSTEMSLNVLAYNLKRVMKIIGMPDLMRALAP
MPDFKTIANFRKDNAKGIRGVCRQFVVLCQQLGLFSEHFVAIDGSKFKAVNHRDRNFTSAKLKRRMEEIESSIARYLTALDTEDRQEPKTAGPKVGLEEK
IAKLKEQMKALQAIEVQLEESPDKQISLTDPDARSMMSSGGKGIVGYNVQTAVDTKHHLIVAHEVTNVGHDRDQLSSMAQQAREAMQVESLSVVADRGYY
KSGEILACHEAGITAYVPKTLSSRAKFDGRFGNEEFVYDADNDEYVCPANQVLIWRNSYVDKGKKLDVYWRSNCQACSIKAQCTPARERKVRRWEHETVL
EEMQVRLANAPQVMTLRKQTVEHPFGTLKQWMGATHFLTRRLGGVSTEMSLNVLAYNLKRVMKIIGMPDLMRALAP
Blast result :
Comments
ISPsy36 is 84% aa similar to ISPa7.
References
1] Margareth Butler (2015) Direct submission
2] McCann,H.C., Rikkerink,E.H., Bertels,F., Fiers,M., Lu,A., Rees-George,J., Andersen,M.T., Gleave,A.P., Haubold,B., Wohlers,M.W., Guttman,D.S., Wang,P.W., Straub,C., Vanneste,J.L., Rainey,P.B. and Templeton,M.D. (2013) PLoS Pathog. 9 (7), E1003503.
2] McCann,H.C., Rikkerink,E.H., Bertels,F., Fiers,M., Lu,A., Rees-George,J., Andersen,M.T., Gleave,A.P., Haubold,B., Wohlers,M.W., Guttman,D.S., Wang,P.W., Straub,C., Vanneste,J.L., Rainey,P.B. and Templeton,M.D. (2013) PLoS Pathog. 9 (7), E1003503.