ISMaq7

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000514 ND Marinobacter aquaeolei
Marinobacter aquaeolei VT8
DNA section
IS Length : 1379 bp

Ends


IR Length : 24/27

IRL : GAGTTATGGTCATTTCTGGTGTACGGGAAGGTAGAAAGGATGGCGTATCC
IRR : GAGTTATTGTCAAATCTGGTGTACGGGCTCAGGCGGCGTTCCTGTCTGAC

Insertion site


Left flankDirect repeatRight flankDR Length
TTGGCAACCTCGATTCTCATCACCCTGGT9

DNA sequence

GAGTTATGGTCATTTCTGGTGTACGGGAAGGTAGAAAGGATGGCGTATCCTGTTGATTGATCACGCCAGATCAACAACCAACAGAAGGTGATACGCCATG
GCCAAGTCTACCCTGAAGACTCTTCCACAACCAGAAAAAGACGTTATTGATCCGCTGACCGAGCTGCTGCGGACTGGGGCACGGGAGCTGATCGCACAGG
CCGTCGAGGCCGAGCTTCAGGCGCTTCTGGATCAGCATGCCGAGCACCGGCTCCCGGATGGCCGTCAGGCCGTCGTGCGCAATGGCTATTTGCCTGAGCG
TACTGTCCAGACCGGCATCGGCAATGTCGACATCAAGGTGCCGAAAGTACGGGATCGGAGTGGTTCCGGGGTTCGCTTCAACAGCACCTTGCTGCCGCCG
TACCTGAAGCGAGCCCGGAGTGTGGAGGAAGTGCTTCCCTGGCTGTACCTGAAGGGTGTGAGCACCGGCGATTACCAAGAGGCACTGGCGGCCTTGCTGG
GTGATCAGGCCAGGGGCTTGTCGGCCAATACGATCAGTCGCTTGAAGCAGCACTGGATCGATGAGCACCGGGAGTGGTGTCAGCGAGATCTGAGCCAAAG
CCGCTACGTGTACTGGTGGGCCGACGGCGTATACAGCAACGTGCGCATGGATGACCGCCTCTGCCTGCTGGTGATCATCGGGGTGACGGAGCATGGGCGC
AAGGAGCTGGTTGCGGTTGAGGACGGCTACCGCGAGTCGGAGGCCAGCTGGTCAGAACTGCTGTCGGGACTGCGGGCCCGAGGCCTGACGACCAGCCCGA
AGCTGGCCATCGGCGACGGCGCTTTGGGCTTCTGGAAAGCACTGGCCAAGTGCTATCCGGACACCCGCCATCAGCGCTGCTGGGTGCACAAGAGCGCGAA
CATCCTGTCCGCGCTGCCAAAGTCGGTGCAACCGAAGGTCAAGGCGGCGCTGCATGAGATCTGGATGGCCGAGACGCAGGACGAGGCGCACAAGGCATTT
GACCGGGCGCTTGTACGCTTTGAGTCGAAGTATCCCGGCGCCATGGAACGGCTGCGCAAGGATCGTGAAGAGCTGCTGGCCTTCTACGACTTCCCGGCGG
AGCACTGGGTCCATATCCGGACGACCAATCCGATCGAATCGACGTTTTCGACGGTGCGCCTGAGAAGCAAGAGAGCGCGGAACTGCGGCTCCCGAGAGAC
CACGCTGGCGATGGTCTACAAGCTACTGGAAACCGCGCAGAAGCGCTGGAAACGGATCAAGGGATTTGATCTGCTGGCCCTCGTGGTCAACAACGTGAAA
TTCAAGGATGGGGAACAAGTACAGGATCAGTCAGACAGGAACGCCGCCTGAGCCCGTACACCAGATTTGACAATAACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa981351+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKSTLKTLPQPEKDVIDPLTELLRTGARELIAQAVEAELQALLDQHAEHRLPDGRQAVVRNGYLPERTVQTGIGNVDIKVPKVRDRSGSGVRFNSTLLP
PYLKRARSVEEVLPWLYLKGVSTGDYQEALAALLGDQARGLSANTISRLKQHWIDEHREWCQRDLSQSRYVYWWADGVYSNVRMDDRLCLLVIIGVTEHG
RKELVAVEDGYRESEASWSELLSGLRARGLTTSPKLAIGDGALGFWKALAKCYPDTRHQRCWVHKSANILSALPKSVQPKVKAALHEIWMAETQDEAHKA
FDRALVRFESKYPGAMERLRKDREELLAFYDFPAEHWVHIRTTNPIESTFSTVRLRSKRARNCGSRETTLAMVYKLLETAQKRWKRIKGFDLLALVVNNV
KFKDGEQVQDQSDRNAA

 

Blast result :
Comments
ISMaq7 is 91% aa similar to ISAeme25.
La transposase is Maqu_1721.
References
1] Pfeiffer F. (2015) Direct submission
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2006) Direct submission to GenBank