ISPa60
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa HN39 plasmid pHN39-SIM Pseudomonas mandelii JR-1 Enterobacter asburiae CAV1043 plasmid pCAV1043-58 |
DNA section
IS Length : 1228 bp
Ends
IR Length : 16/17
IRL : CAGGGCAATCGCATGAACGCCTGCCGATTTGAATGAGTCCTTTCCCAGCG
IRR : CAAGGCAATCGCATGAAGCTCACCTGAGACCTAATAGTTCAGCCCGATAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGCATCTAA | ACAGGCGTTG | TTGATTATCA | 10 |
CAAGCGGCCG | AGGTTGAAGT | CCAGCAGGCG | 10 |
DNA sequence
CAGGGCAATCGCATGAACGCCTGCCGATTTGAATGAGTCCTTTCCCAGCGGGCATCCTGAGCGCCTCTCTACTCAGGATGCCCTGCAATGTCGCATCACA
TACCAATCTCCGATGTTCTGGTCGCCATCAATGATCCCCGTCAGCAGGGCAAGATTCGTCACGACCTGGTCGAAACACTGGTCGTGGCTATCTGCGGCGT
GCTTGCCGGCGCTGACACCTTCATCGAAATCGAACTCTGGGCTGAGCAGCGGCTGGACTGGTTCCGCCGTATTCTGAAACTACCCCACGGCATTCCCTCA
CACGACACCTTTGGACGGCTATTCAGCCTGATCGATCCAGAGGAGTTCGAGCAGGCCTTCCGCTGTTGGGTTGCGGCGATCCTACCGGCCCTTTCTCCGC
AAGTGGTTGCCCTAGACGGCAAGACCAGTCGCCGCTCCGGCAAGAAAAACACGGCCCCGTTGCACCTGGTCAGCGCTTTTGCGGCTGATTCAGGGCTGAT
TCTCGGGCAGAGGGCGACCTCCCAGAAGTCCAACGAGAAGACCGCCATTCCTGAGCTGCTGGCCACACTGGCGCTTGAGGGCTGCACCGTGACGATCGAT
GCCATGGGTACCCAGCCGGACATTGCACAGGCCATTCTCGATCGCGGGGCGCACTATCTGCTGGCCATCAAGGGAAACCAGCCGAAGCTGGCCGAAGCGA
TCGATGACTTCGCTGACACCTTTTTGGACGGCGATCCTGCCCGGGTACCCCATGCGCACTTCGAGCATGTCGAGAAGGACCATGGCCGGCTGGAGGTTCG
TCGCAGCCATGTTTTCGACCAACTCCAGTGCCTGCCACAGCCAGAACGCTGGCCAGGACTGCGCACTTTCGTGATGCTGGAGTCCGAGCGGACTGTGGGC
AACCAGACCAGCCTGGAGCGCCGTTACTACATCAGCAGTCTTGCTCCGGATGCAGAGCGCATCGCACATGCCATCAGGGCGCACTGGGGCGTGGAGAACC
GCGTCCACTGGTGCATGGATGTCATTTTTGGTGACGATCAGATGCGGATCCGAACCGGGCATGCTGCCCACAACATGGCCGTTCTCAAGCAACTTACATT
GAATTTGATCCGGTTGGATCCGGTCAAGCGCAAGGGTGGCATCAAGGCACGAAGGCTGATTGCTGCAACCTCTGATGATTATCGGGCTGAACTATTAGGT
CTCAGGTGAGCTTCATGCGATTGCCTTG
TACCAATCTCCGATGTTCTGGTCGCCATCAATGATCCCCGTCAGCAGGGCAAGATTCGTCACGACCTGGTCGAAACACTGGTCGTGGCTATCTGCGGCGT
GCTTGCCGGCGCTGACACCTTCATCGAAATCGAACTCTGGGCTGAGCAGCGGCTGGACTGGTTCCGCCGTATTCTGAAACTACCCCACGGCATTCCCTCA
CACGACACCTTTGGACGGCTATTCAGCCTGATCGATCCAGAGGAGTTCGAGCAGGCCTTCCGCTGTTGGGTTGCGGCGATCCTACCGGCCCTTTCTCCGC
AAGTGGTTGCCCTAGACGGCAAGACCAGTCGCCGCTCCGGCAAGAAAAACACGGCCCCGTTGCACCTGGTCAGCGCTTTTGCGGCTGATTCAGGGCTGAT
TCTCGGGCAGAGGGCGACCTCCCAGAAGTCCAACGAGAAGACCGCCATTCCTGAGCTGCTGGCCACACTGGCGCTTGAGGGCTGCACCGTGACGATCGAT
GCCATGGGTACCCAGCCGGACATTGCACAGGCCATTCTCGATCGCGGGGCGCACTATCTGCTGGCCATCAAGGGAAACCAGCCGAAGCTGGCCGAAGCGA
TCGATGACTTCGCTGACACCTTTTTGGACGGCGATCCTGCCCGGGTACCCCATGCGCACTTCGAGCATGTCGAGAAGGACCATGGCCGGCTGGAGGTTCG
TCGCAGCCATGTTTTCGACCAACTCCAGTGCCTGCCACAGCCAGAACGCTGGCCAGGACTGCGCACTTTCGTGATGCTGGAGTCCGAGCGGACTGTGGGC
AACCAGACCAGCCTGGAGCGCCGTTACTACATCAGCAGTCTTGCTCCGGATGCAGAGCGCATCGCACATGCCATCAGGGCGCACTGGGGCGTGGAGAACC
GCGTCCACTGGTGCATGGATGTCATTTTTGGTGACGATCAGATGCGGATCCGAACCGGGCATGCTGCCCACAACATGGCCGTTCTCAAGCAACTTACATT
GAATTTGATCCGGTTGGATCCGGTCAAGCGCAAGGGTGGCATCAAGGCACGAAGGCTGATTGCTGCAACCTCTGATGATTATCGGGCTGAACTATTAGGT
CTCAGGTGAGCTTCATGCGATTGCCTTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1122 bp | 373 aa | 88 | 1209 | + | No |
Chemistry : Unknow
ORF sequence :
MSHHIPISDVLVAINDPRQQGKIRHDLVETLVVAICGVLAGADTFIEIELWAEQRLDWFRRILKLPHGIPSHDTFGRLFSLIDPEEFEQAFRCWVAAILP
ALSPQVVALDGKTSRRSGKKNTAPLHLVSAFAADSGLILGQRATSQKSNEKTAIPELLATLALEGCTVTIDAMGTQPDIAQAILDRGAHYLLAIKGNQPK
LAEAIDDFADTFLDGDPARVPHAHFEHVEKDHGRLEVRRSHVFDQLQCLPQPERWPGLRTFVMLESERTVGNQTSLERRYYISSLAPDAERIAHAIRAHW
GVENRVHWCMDVIFGDDQMRIRTGHAAHNMAVLKQLTLNLIRLDPVKRKGGIKARRLIAATSDDYRAELLGLR
ALSPQVVALDGKTSRRSGKKNTAPLHLVSAFAADSGLILGQRATSQKSNEKTAIPELLATLALEGCTVTIDAMGTQPDIAQAILDRGAHYLLAIKGNQPK
LAEAIDDFADTFLDGDPARVPHAHFEHVEKDHGRLEVRRSHVFDQLQCLPQPERWPGLRTFVMLESERTVGNQTSLERRYYISSLAPDAERIAHAIRAHW
GVENRVHWCMDVIFGDDQMRIRTGHAAHNMAVLKQLTLNLIRLDPVKRKGGIKARRLIAATSDDYRAELLGLR
Blast result :
Comments
ISPa60 is 74% aa similar to ISAzo8.
References
1] Dongsheng Zhou (2015) Direct submission.