ISPa60

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa HN39 plasmid pHN39-SIM
Pseudomonas mandelii JR-1
Enterobacter asburiae CAV1043 plasmid pCAV1043-58
DNA section
IS Length : 1228 bp

Ends


IR Length : 16/17

IRL : CAGGGCAATCGCATGAACGCCTGCCGATTTGAATGAGTCCTTTCCCAGCG
IRR : CAAGGCAATCGCATGAAGCTCACCTGAGACCTAATAGTTCAGCCCGATAA

Insertion site


Left flankDirect repeatRight flankDR Length
CAGCATCTAAACAGGCGTTGTTGATTATCA10
CAAGCGGCCGAGGTTGAAGTCCAGCAGGCG10

DNA sequence

CAGGGCAATCGCATGAACGCCTGCCGATTTGAATGAGTCCTTTCCCAGCGGGCATCCTGAGCGCCTCTCTACTCAGGATGCCCTGCAATGTCGCATCACA
TACCAATCTCCGATGTTCTGGTCGCCATCAATGATCCCCGTCAGCAGGGCAAGATTCGTCACGACCTGGTCGAAACACTGGTCGTGGCTATCTGCGGCGT
GCTTGCCGGCGCTGACACCTTCATCGAAATCGAACTCTGGGCTGAGCAGCGGCTGGACTGGTTCCGCCGTATTCTGAAACTACCCCACGGCATTCCCTCA
CACGACACCTTTGGACGGCTATTCAGCCTGATCGATCCAGAGGAGTTCGAGCAGGCCTTCCGCTGTTGGGTTGCGGCGATCCTACCGGCCCTTTCTCCGC
AAGTGGTTGCCCTAGACGGCAAGACCAGTCGCCGCTCCGGCAAGAAAAACACGGCCCCGTTGCACCTGGTCAGCGCTTTTGCGGCTGATTCAGGGCTGAT
TCTCGGGCAGAGGGCGACCTCCCAGAAGTCCAACGAGAAGACCGCCATTCCTGAGCTGCTGGCCACACTGGCGCTTGAGGGCTGCACCGTGACGATCGAT
GCCATGGGTACCCAGCCGGACATTGCACAGGCCATTCTCGATCGCGGGGCGCACTATCTGCTGGCCATCAAGGGAAACCAGCCGAAGCTGGCCGAAGCGA
TCGATGACTTCGCTGACACCTTTTTGGACGGCGATCCTGCCCGGGTACCCCATGCGCACTTCGAGCATGTCGAGAAGGACCATGGCCGGCTGGAGGTTCG
TCGCAGCCATGTTTTCGACCAACTCCAGTGCCTGCCACAGCCAGAACGCTGGCCAGGACTGCGCACTTTCGTGATGCTGGAGTCCGAGCGGACTGTGGGC
AACCAGACCAGCCTGGAGCGCCGTTACTACATCAGCAGTCTTGCTCCGGATGCAGAGCGCATCGCACATGCCATCAGGGCGCACTGGGGCGTGGAGAACC
GCGTCCACTGGTGCATGGATGTCATTTTTGGTGACGATCAGATGCGGATCCGAACCGGGCATGCTGCCCACAACATGGCCGTTCTCAAGCAACTTACATT
GAATTTGATCCGGTTGGATCCGGTCAAGCGCAAGGGTGGCATCAAGGCACGAAGGCTGATTGCTGCAACCTCTGATGATTATCGGGCTGAACTATTAGGT
CTCAGGTGAGCTTCATGCGATTGCCTTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1122 bp373 aa881209+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSHHIPISDVLVAINDPRQQGKIRHDLVETLVVAICGVLAGADTFIEIELWAEQRLDWFRRILKLPHGIPSHDTFGRLFSLIDPEEFEQAFRCWVAAILP
ALSPQVVALDGKTSRRSGKKNTAPLHLVSAFAADSGLILGQRATSQKSNEKTAIPELLATLALEGCTVTIDAMGTQPDIAQAILDRGAHYLLAIKGNQPK
LAEAIDDFADTFLDGDPARVPHAHFEHVEKDHGRLEVRRSHVFDQLQCLPQPERWPGLRTFVMLESERTVGNQTSLERRYYISSLAPDAERIAHAIRAHW
GVENRVHWCMDVIFGDDQMRIRTGHAAHNMAVLKQLTLNLIRLDPVKRKGGIKARRLIAATSDDYRAELLGLR

 

Blast result :
Comments
ISPa60 is 74% aa similar to ISAzo8.
References
1] Dongsheng Zhou (2015) Direct submission.