ISPa59

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa HN39 plasmid pHN39-SIM
DNA section
IS Length : 1113 bp

Ends


IR Length : 22/27

IRL : GGCGGCGGCAAAAACTGAGTGCAACACCTGACCTTTCCGGTACGGTGCTG
IRR : GGCGGTTGCAGGAGCTGAGTGCAACACGGTCATTGAATTGAAGCTGGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
TCACCTCGCAGTGATAATAAGGGCTGTGTAATTTCTTACATTGG0

DNA sequence

GGCGGCGGCAAAAACTGAGTGCAACACCTGACCTTTCCGGTACGGTGCTGCCCCTATGTCTTATTCCGAACTCAGCGTTGAAGAACGCGCCACCATTCAA
ATCGGCCGTGCCCAAGGGTTCAGCCTGCGCAAGATTGCTTGCTTGATCACCCGATCCCCTTCGACCATCAGCCGGGAGCTGCGCCGCAATCGAGATGTCT
GTGGCGGCTACTCGGCCCGCATGGCCCAGCAGCAGATGCAGGCCCGCCGCCAACGCTGTCGACCGAAACGAAAGCTCTTGCCGAGTAGTGAGCGCTTCCA
GTTGGTGGCCCATATGCTGCGCGAGCGTTTGTCTCCCGAGCAGATTGCCGGCAAGCTGCGCAGCATGAACATTCCCAGCCTCAGAGAAGCCTACGTCTGT
CGCGAGACGATCTATAACGCCATCTACGCCTTGCCGGTCGGCGAGCTGCGTAAAGAGCTGATCATCTGCCTGCGCCAAAGTAAGACGACGCGACGGCCGC
GCTCTGGCGGCGTGGATCGACGCGGCCAGATCCCCGAGATGGTCAGCATCCATGTGCGCCCACCGGAGATCGAAGACCGGCTGATGCCAGGGCATTGGGA
AGGCGATCTGATCAAGGGCAAGGCCAACGCCTCGTCTGTAGGCACGCTGGTGGAACGTACCAGTGGCTACCTGATGCTGGTAAAGATGAACGACGCGACG
GCGACCTCGGCGATGGAAGGCTTCAGTGCAGCGCTCAATGGCATGCCGCTGGCGATGCGCAAGAGCATGACCTACGACCAGGGCCGAGAAATGGCGCGGC
ATGCTGAAATCACCCAGCAGACCGGGGTGGCAATTTACTTCTGCGACCCGCATAGCCCTTGGCAACGCGGCAGCAACGAAAACATAAATGGCCTGATCCG
CCAGTATCTGCCCAAGGGCACGGACTTGTCGGTACACAGCCAAGAAGAACTCGACGCTATTGCACTGCAACTGAACATGCGACCGCGTAAGCGCTTCGAC
TTCAAGTGCCCCATCGAAGTTATGGGTGAGGTGATGCAGAAGGCCATGACTATGCGGCATGATGCTCCAGCTTCAATTCAATGACCGTGTTGCACTCAGC
TCCTGCAACCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa561084+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSYSELSVEERATIQIGRAQGFSLRKIACLITRSPSTISRELRRNRDVCGGYSARMAQQQMQARRQRCRPKRKLLPSSERFQLVAHMLRERLSPEQIAGK
LRSMNIPSLREAYVCRETIYNAIYALPVGELRKELIICLRQSKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASSVGTLVE
RTSGYLMLVKMNDATATSAMEGFSAALNGMPLAMRKSMTYDQGREMARHAEITQQTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEELD
AIALQLNMRPRKRFDFKCPIEVMGEVMQKAMTMRHDAPASIQ

 

Blast result :
Comments
ISPa59 is 96% aa similar to ISPsp7.
References
1] Dongsheng Zhou (2015) Direct submission.