ISPa59
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa HN39 plasmid pHN39-SIM |
DNA section
IS Length : 1113 bp
Ends
IR Length : 22/27
IRL : GGCGGCGGCAAAAACTGAGTGCAACACCTGACCTTTCCGGTACGGTGCTG
IRR : GGCGGTTGCAGGAGCTGAGTGCAACACGGTCATTGAATTGAAGCTGGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCACCTCGCAGTGATAATAAGGG | CTGTGTAATTTCTTACATTGG | 0 |
DNA sequence
GGCGGCGGCAAAAACTGAGTGCAACACCTGACCTTTCCGGTACGGTGCTGCCCCTATGTCTTATTCCGAACTCAGCGTTGAAGAACGCGCCACCATTCAA
ATCGGCCGTGCCCAAGGGTTCAGCCTGCGCAAGATTGCTTGCTTGATCACCCGATCCCCTTCGACCATCAGCCGGGAGCTGCGCCGCAATCGAGATGTCT
GTGGCGGCTACTCGGCCCGCATGGCCCAGCAGCAGATGCAGGCCCGCCGCCAACGCTGTCGACCGAAACGAAAGCTCTTGCCGAGTAGTGAGCGCTTCCA
GTTGGTGGCCCATATGCTGCGCGAGCGTTTGTCTCCCGAGCAGATTGCCGGCAAGCTGCGCAGCATGAACATTCCCAGCCTCAGAGAAGCCTACGTCTGT
CGCGAGACGATCTATAACGCCATCTACGCCTTGCCGGTCGGCGAGCTGCGTAAAGAGCTGATCATCTGCCTGCGCCAAAGTAAGACGACGCGACGGCCGC
GCTCTGGCGGCGTGGATCGACGCGGCCAGATCCCCGAGATGGTCAGCATCCATGTGCGCCCACCGGAGATCGAAGACCGGCTGATGCCAGGGCATTGGGA
AGGCGATCTGATCAAGGGCAAGGCCAACGCCTCGTCTGTAGGCACGCTGGTGGAACGTACCAGTGGCTACCTGATGCTGGTAAAGATGAACGACGCGACG
GCGACCTCGGCGATGGAAGGCTTCAGTGCAGCGCTCAATGGCATGCCGCTGGCGATGCGCAAGAGCATGACCTACGACCAGGGCCGAGAAATGGCGCGGC
ATGCTGAAATCACCCAGCAGACCGGGGTGGCAATTTACTTCTGCGACCCGCATAGCCCTTGGCAACGCGGCAGCAACGAAAACATAAATGGCCTGATCCG
CCAGTATCTGCCCAAGGGCACGGACTTGTCGGTACACAGCCAAGAAGAACTCGACGCTATTGCACTGCAACTGAACATGCGACCGCGTAAGCGCTTCGAC
TTCAAGTGCCCCATCGAAGTTATGGGTGAGGTGATGCAGAAGGCCATGACTATGCGGCATGATGCTCCAGCTTCAATTCAATGACCGTGTTGCACTCAGC
TCCTGCAACCGCC
ATCGGCCGTGCCCAAGGGTTCAGCCTGCGCAAGATTGCTTGCTTGATCACCCGATCCCCTTCGACCATCAGCCGGGAGCTGCGCCGCAATCGAGATGTCT
GTGGCGGCTACTCGGCCCGCATGGCCCAGCAGCAGATGCAGGCCCGCCGCCAACGCTGTCGACCGAAACGAAAGCTCTTGCCGAGTAGTGAGCGCTTCCA
GTTGGTGGCCCATATGCTGCGCGAGCGTTTGTCTCCCGAGCAGATTGCCGGCAAGCTGCGCAGCATGAACATTCCCAGCCTCAGAGAAGCCTACGTCTGT
CGCGAGACGATCTATAACGCCATCTACGCCTTGCCGGTCGGCGAGCTGCGTAAAGAGCTGATCATCTGCCTGCGCCAAAGTAAGACGACGCGACGGCCGC
GCTCTGGCGGCGTGGATCGACGCGGCCAGATCCCCGAGATGGTCAGCATCCATGTGCGCCCACCGGAGATCGAAGACCGGCTGATGCCAGGGCATTGGGA
AGGCGATCTGATCAAGGGCAAGGCCAACGCCTCGTCTGTAGGCACGCTGGTGGAACGTACCAGTGGCTACCTGATGCTGGTAAAGATGAACGACGCGACG
GCGACCTCGGCGATGGAAGGCTTCAGTGCAGCGCTCAATGGCATGCCGCTGGCGATGCGCAAGAGCATGACCTACGACCAGGGCCGAGAAATGGCGCGGC
ATGCTGAAATCACCCAGCAGACCGGGGTGGCAATTTACTTCTGCGACCCGCATAGCCCTTGGCAACGCGGCAGCAACGAAAACATAAATGGCCTGATCCG
CCAGTATCTGCCCAAGGGCACGGACTTGTCGGTACACAGCCAAGAAGAACTCGACGCTATTGCACTGCAACTGAACATGCGACCGCGTAAGCGCTTCGAC
TTCAAGTGCCCCATCGAAGTTATGGGTGAGGTGATGCAGAAGGCCATGACTATGCGGCATGATGCTCCAGCTTCAATTCAATGACCGTGTTGCACTCAGC
TCCTGCAACCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 56 | 1084 | + | No |
Chemistry : DDE
ORF sequence :
MSYSELSVEERATIQIGRAQGFSLRKIACLITRSPSTISRELRRNRDVCGGYSARMAQQQMQARRQRCRPKRKLLPSSERFQLVAHMLRERLSPEQIAGK
LRSMNIPSLREAYVCRETIYNAIYALPVGELRKELIICLRQSKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASSVGTLVE
RTSGYLMLVKMNDATATSAMEGFSAALNGMPLAMRKSMTYDQGREMARHAEITQQTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEELD
AIALQLNMRPRKRFDFKCPIEVMGEVMQKAMTMRHDAPASIQ
LRSMNIPSLREAYVCRETIYNAIYALPVGELRKELIICLRQSKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASSVGTLVE
RTSGYLMLVKMNDATATSAMEGFSAALNGMPLAMRKSMTYDQGREMARHAEITQQTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEELD
AIALQLNMRPRKRFDFKCPIEVMGEVMQKAMTMRHDAPASIQ
Blast result :
Comments
ISPa59 is 96% aa similar to ISPsp7.
References
1] Dongsheng Zhou (2015) Direct submission.