ISPath1

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP011568 ND Pandoraea thiooxydans
Pandoraea thiooxydans DSM 25325
DNA section
IS Length : 1357 bp

Ends


IR Length : 13

IRL : taatgagATGGTCACCCCCACCCTACACGCGGGTTACGCTGTAGGGTGTT
IRR : ----tctATGGTCACCCCCATTTTTGCAACACTGATTTTTGACGTTGTGA

Insertion site


Left flankDirect repeatRight flankDR Length
CCACGGGGCGTTTTTCATTG0

DNA sequence

TAATGAGATGGTCACCCCCACCCTACACGCGGGTTACGCTGTAGGGTGTTTTTCTTTCTGGAGGCCATCATGCAGAATGTTACGCTGGTTGGAATCGATC
TAGGCAAGCACTCGTTTCACCTTCATGGTCAGGACCGGCACGGCAAGGCCGTGTTTCGCAAGAAGGTGAGCCGCAAGCAACTGGTCGAGTTTTTCGCTAC
GTTTCACGCCTGCACGCTGGTCATGGAGGCCTGTGCCGGGGCCCATCACATGGCCCGCCAACTGGCCGGGTTCGGACACCAGGTCAAGCTTATCTCCCCC
CAGTTCGTGCGGCCCTTCGTCAAGAGCAACAAGAACGACTTCGTGGACGCCGAGGCGATCTGCGAGGCGGCGTCGCGCCCGTCCATGCGGTTCGTCACGC
CCAAGACGGAGTCGCAGCAAACCTTGTCGGCCCTGCACCGGGTCCGTGAGTCACTGGTGCGCGATCGCACCAAAACTATCAACCAGATACACGGCTTCCT
ACTGGAGTTCGGCATCAGCCTGCCGGTTGGCAACGCTGTCATCACGCGTCTGCCGGCTGTGCTCGCCGAACATCGGTTACCGCCGCGCCTGATCGCGATC
CTCGAACGCCTGCACGCTCACTTCAAGTACCTCAGTGAGCAGATTGGCGAAATCGACAAGGAGATGGCCCGCCAACTCGCCGATGACGAGCTCGGCTGCC
GCCTGCTGTCGATCCCAGGCGTCGGCCCTATTACAGCCAGTGTGCTTGCCAGCGAGATGGGCGATGGTCAGCAGTACGGGTCCAGCCGCGATTTCGCTGC
GTCGATTGGCTTGGTGCCGCGCCAGTACAGTACTGGCGGCAGGGCCAACCTGCTGGGGATCAGCAAGCGGGGTGACAAGAATCTCCGGCGCCTGCTAGTC
CAGTGTGCCCGCTCCTACATGCAGCGACTCGATCGGCACAGCGGTCGGCTCGCCGACTGGGTCCGCGCCATGCTGAGGCGACGGCACTCGAACGTGGTGG
CCTGCGCGTTGGCGAACAAGCTGGCGCGCACCGCGTGGGCGCTGGCGACTCGTCGCACCACCTTCGATGCGGGCGCGAGCGCCATGCCTGCCTAAGTACC
CGATTGCACAACACGCTTTACCGAAGTCCACCCACCTGGTTTTGCGACCGCTGAAATTGGATGACGTGAACGGCACACCGGCCTGACGGACAACCTGACA
TAAAGAACGGCTCTCGAAGCCGCGGGCGTTTTAAGGACCGTCAGGCGCGACTCTCATCGTGGCGCGGGGAGTGATCCCCAAAACGACGCCGGATAGATTT
ACGCAAGCCAATCACAACGTCAAAAATCAGTGTTGCAAAAATGGGGGTGACCATAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp341 aa701095+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MQNVTLVGIDLGKHSFHLHGQDRHGKAVFRKKVSRKQLVEFFATFHACTLVMEACAGAHHMARQLAGFGHQVKLISPQFVRPFVKSNKNDFVDAEAICEA
ASRPSMRFVTPKTESQQTLSALHRVRESLVRDRTKTINQIHGFLLEFGISLPVGNAVITRLPAVLAEHRLPPRLIAILERLHAHFKYLSEQIGEIDKEMA
RQLADDELGCRLLSIPGVGPITASVLASEMGDGQQYGSSRDFAASIGLVPRQYSTGGRANLLGISKRGDKNLRRLLVQCARSYMQRLDRHSGRLADWVRA
MLRRRHSNVVACALANKLARTAWALATRRTTFDAGASAMPA

 

Blast result :
Comments
ISPath1 is 92% aa similar to ISBcen1.
References
1] Pfeiffer F. (2015) Direct submission
2] Lim,Y.L., Ee,R., Yong,D., How,K.Y., Yin,W.F. and Chan,K.G. (2015) Direct submission to GenBank