ISPath1
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP011568 | ND | Pandoraea thiooxydans | Pandoraea thiooxydans DSM 25325 |
DNA section
IS Length : 1357 bp
Ends
IR Length : 13
IRL : taatgagATGGTCACCCCCACCCTACACGCGGGTTACGCTGTAGGGTGTT
IRR : ----tctATGGTCACCCCCATTTTTGCAACACTGATTTTTGACGTTGTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCACGGGGCG | TTTTTCATTG | 0 |
DNA sequence
TAATGAGATGGTCACCCCCACCCTACACGCGGGTTACGCTGTAGGGTGTTTTTCTTTCTGGAGGCCATCATGCAGAATGTTACGCTGGTTGGAATCGATC
TAGGCAAGCACTCGTTTCACCTTCATGGTCAGGACCGGCACGGCAAGGCCGTGTTTCGCAAGAAGGTGAGCCGCAAGCAACTGGTCGAGTTTTTCGCTAC
GTTTCACGCCTGCACGCTGGTCATGGAGGCCTGTGCCGGGGCCCATCACATGGCCCGCCAACTGGCCGGGTTCGGACACCAGGTCAAGCTTATCTCCCCC
CAGTTCGTGCGGCCCTTCGTCAAGAGCAACAAGAACGACTTCGTGGACGCCGAGGCGATCTGCGAGGCGGCGTCGCGCCCGTCCATGCGGTTCGTCACGC
CCAAGACGGAGTCGCAGCAAACCTTGTCGGCCCTGCACCGGGTCCGTGAGTCACTGGTGCGCGATCGCACCAAAACTATCAACCAGATACACGGCTTCCT
ACTGGAGTTCGGCATCAGCCTGCCGGTTGGCAACGCTGTCATCACGCGTCTGCCGGCTGTGCTCGCCGAACATCGGTTACCGCCGCGCCTGATCGCGATC
CTCGAACGCCTGCACGCTCACTTCAAGTACCTCAGTGAGCAGATTGGCGAAATCGACAAGGAGATGGCCCGCCAACTCGCCGATGACGAGCTCGGCTGCC
GCCTGCTGTCGATCCCAGGCGTCGGCCCTATTACAGCCAGTGTGCTTGCCAGCGAGATGGGCGATGGTCAGCAGTACGGGTCCAGCCGCGATTTCGCTGC
GTCGATTGGCTTGGTGCCGCGCCAGTACAGTACTGGCGGCAGGGCCAACCTGCTGGGGATCAGCAAGCGGGGTGACAAGAATCTCCGGCGCCTGCTAGTC
CAGTGTGCCCGCTCCTACATGCAGCGACTCGATCGGCACAGCGGTCGGCTCGCCGACTGGGTCCGCGCCATGCTGAGGCGACGGCACTCGAACGTGGTGG
CCTGCGCGTTGGCGAACAAGCTGGCGCGCACCGCGTGGGCGCTGGCGACTCGTCGCACCACCTTCGATGCGGGCGCGAGCGCCATGCCTGCCTAAGTACC
CGATTGCACAACACGCTTTACCGAAGTCCACCCACCTGGTTTTGCGACCGCTGAAATTGGATGACGTGAACGGCACACCGGCCTGACGGACAACCTGACA
TAAAGAACGGCTCTCGAAGCCGCGGGCGTTTTAAGGACCGTCAGGCGCGACTCTCATCGTGGCGCGGGGAGTGATCCCCAAAACGACGCCGGATAGATTT
ACGCAAGCCAATCACAACGTCAAAAATCAGTGTTGCAAAAATGGGGGTGACCATAGA
TAGGCAAGCACTCGTTTCACCTTCATGGTCAGGACCGGCACGGCAAGGCCGTGTTTCGCAAGAAGGTGAGCCGCAAGCAACTGGTCGAGTTTTTCGCTAC
GTTTCACGCCTGCACGCTGGTCATGGAGGCCTGTGCCGGGGCCCATCACATGGCCCGCCAACTGGCCGGGTTCGGACACCAGGTCAAGCTTATCTCCCCC
CAGTTCGTGCGGCCCTTCGTCAAGAGCAACAAGAACGACTTCGTGGACGCCGAGGCGATCTGCGAGGCGGCGTCGCGCCCGTCCATGCGGTTCGTCACGC
CCAAGACGGAGTCGCAGCAAACCTTGTCGGCCCTGCACCGGGTCCGTGAGTCACTGGTGCGCGATCGCACCAAAACTATCAACCAGATACACGGCTTCCT
ACTGGAGTTCGGCATCAGCCTGCCGGTTGGCAACGCTGTCATCACGCGTCTGCCGGCTGTGCTCGCCGAACATCGGTTACCGCCGCGCCTGATCGCGATC
CTCGAACGCCTGCACGCTCACTTCAAGTACCTCAGTGAGCAGATTGGCGAAATCGACAAGGAGATGGCCCGCCAACTCGCCGATGACGAGCTCGGCTGCC
GCCTGCTGTCGATCCCAGGCGTCGGCCCTATTACAGCCAGTGTGCTTGCCAGCGAGATGGGCGATGGTCAGCAGTACGGGTCCAGCCGCGATTTCGCTGC
GTCGATTGGCTTGGTGCCGCGCCAGTACAGTACTGGCGGCAGGGCCAACCTGCTGGGGATCAGCAAGCGGGGTGACAAGAATCTCCGGCGCCTGCTAGTC
CAGTGTGCCCGCTCCTACATGCAGCGACTCGATCGGCACAGCGGTCGGCTCGCCGACTGGGTCCGCGCCATGCTGAGGCGACGGCACTCGAACGTGGTGG
CCTGCGCGTTGGCGAACAAGCTGGCGCGCACCGCGTGGGCGCTGGCGACTCGTCGCACCACCTTCGATGCGGGCGCGAGCGCCATGCCTGCCTAAGTACC
CGATTGCACAACACGCTTTACCGAAGTCCACCCACCTGGTTTTGCGACCGCTGAAATTGGATGACGTGAACGGCACACCGGCCTGACGGACAACCTGACA
TAAAGAACGGCTCTCGAAGCCGCGGGCGTTTTAAGGACCGTCAGGCGCGACTCTCATCGTGGCGCGGGGAGTGATCCCCAAAACGACGCCGGATAGATTT
ACGCAAGCCAATCACAACGTCAAAAATCAGTGTTGCAAAAATGGGGGTGACCATAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 341 aa | 70 | 1095 | + | No |
Chemistry : DEDD
ORF sequence :
MQNVTLVGIDLGKHSFHLHGQDRHGKAVFRKKVSRKQLVEFFATFHACTLVMEACAGAHHMARQLAGFGHQVKLISPQFVRPFVKSNKNDFVDAEAICEA
ASRPSMRFVTPKTESQQTLSALHRVRESLVRDRTKTINQIHGFLLEFGISLPVGNAVITRLPAVLAEHRLPPRLIAILERLHAHFKYLSEQIGEIDKEMA
RQLADDELGCRLLSIPGVGPITASVLASEMGDGQQYGSSRDFAASIGLVPRQYSTGGRANLLGISKRGDKNLRRLLVQCARSYMQRLDRHSGRLADWVRA
MLRRRHSNVVACALANKLARTAWALATRRTTFDAGASAMPA
ASRPSMRFVTPKTESQQTLSALHRVRESLVRDRTKTINQIHGFLLEFGISLPVGNAVITRLPAVLAEHRLPPRLIAILERLHAHFKYLSEQIGEIDKEMA
RQLADDELGCRLLSIPGVGPITASVLASEMGDGQQYGSSRDFAASIGLVPRQYSTGGRANLLGISKRGDKNLRRLLVQCARSYMQRLDRHSGRLADWVRA
MLRRRHSNVVACALANKLARTAWALATRRTTFDAGASAMPA
Blast result :
Comments
ISPath1 is 92% aa similar to ISBcen1.
References
1] Pfeiffer F. (2015) Direct submission
2] Lim,Y.L., Ee,R., Yong,D., How,K.Y., Yin,W.F. and Chan,K.G. (2015) Direct submission to GenBank
2] Lim,Y.L., Ee,R., Yong,D., How,K.Y., Yin,W.F. and Chan,K.G. (2015) Direct submission to GenBank