ISHel2
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLK01000005 | ND | Haloferax elongans | Haloferax elongans ATCC BAA-1513 |
DNA section
IS Length : 1975 bp
Ends
Left end : AGAGGAAACAAGGCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGCCGACACTTAGACGTGTTCTGTCCGCTCGATGTACCGCTCAATCGTTCCCGTTG II struct. : No
Right end : ACCCACCCGACCGCCCGAGGCTATCAGGCCGATGGTCAGGTGGGAGTATCTGATTAAACCACGGGAAGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CAATATGGACGT | CTAC | GTGCGGTTTCAC |
DNA sequence
AGAGGAAACAAGGCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGCCGACACTTAGACGTGTTCTGTCCGCTCGATGTACCGCTCAATCGTTCCCGTTG
AGACTGTTCCTGCCGTTCCAATGTAGTACGACCGTTCCCAGAATCCACCACCCCACAAATACTCCTCTAAGAACGACTCGTGCTGTTCCCACATCTCCCG
CGCCGTGATGCTCTTGACAGTCCGTGCAATCTCGCTCGGCGCGTGTTTCGGGTGGGCGGAGAGGAACAAATGTACGTGGTCGGGAGAGATGTGGAGCGAC
AGTATCTCGTAATCATACTCGTCACACACGTCGCGGAAACTCGTTTCCAACGAATCCTCGATGGGTTCGAGAATCGCGTGACGGTACTTCGGACACCACA
CGAAGTGGTAGTTGACGTTGTACACTGTGTGATTCGACTGCTTCTCACCCATATCGAACCCACTCCACCAACACAGTTAAGTATATACAAAGGATATACG
AAAGTATGGCGAATCGCTTTGAAATCGACGGCGAGGAAGTTCTCGACGGTGAAGTCAAACCGTTCGGGAATAGTGCCCACGTCACCGTCCCTAAACGCTG
GCGTGGGGCCGACGTGAAAGTCGTCCGAACCTCAGAACCCACCGAACAAGACGAAGAATGACCGACTCACAGGCTCTCGTCAAGACTCTGGACTTCCAAC
TCAACATCCAGAGTGACAACGAGAGCCTGTTGTACGACGCCACGCTTGAAGCCCGCTCGGTGTACAACGAAACCACCCGTCTCGCCAAAGAAGGTGTGGA
CTGGAACGCGATTCCCGACCGCGTAGCCGACGACGCCAACCTCGTGAAAAACACGACTCAGCGCGTTGTCGCCAAGGCTCTCGGAGCGATGGAGAACTAC
TACGAGTACGACGACTTCGGACTCCCCAGTCACACCAAGGGTGGTTCGTACCCGCTTCGTGCGAACTACGAGGAGGGGTACAACCTGTCGCTCACCGACG
ATGGCGACGTGGCGTTCCGAATCAGCGCGAAACCGTACAAGCACGTCAAGGGCGTCCTCAAAGGGAGTGACGCTCACCTCGACATTCTCAAGATCGCGCT
CGAAAACGACGAGTGGAAGATTGGGACGGCGGAAGCCCTGTTCCACAACGACAACGCCGAACTACACGTTAACGTTACCAACACCGAGCAGACCGTGCGA
GACAAGCACGACTCGCGGACGGTCGTCGGCGTGGATGTGAACGAGGACAACGTGGCTCTCACCGCTCTCTCAGAGGATGGTGTCGAAGACACGTTGGTTA
TCGACTTTCCCGAAATCAAGTTCGAGCGCCACCGCTACTTCACGATGCGAAAGCGTGTTCAGAACGCGGGGAAAGACAGCATCCACGACACACTCGAAGG
GCGTGAAGAACGGTTTGTCCGCGACCGACTCCACAAGGTAAGCCGTCACATCGTGGAGTGGAGCCGTCAGTTCGAGAAGCCGTGCATCGTCTTTGAAGAC
CTCAAAGAGATGCGCGACAGTATCGACTACGGCACGCGGATGAACCGACGGTTGCACCACCTTCCCTTCCGCGCCCTCCAGTTCTATACATCGTACAAGG
CGTCGTTCGAGGGTATCCCGACTGCGTGGATTAACCCCGAATACACTAGCCAGCGGTGTCCGATGTGCGGACACGCCGAGCGTGCGAACCGCAACAAGAA
GCGGTTCAAGTGCAAGTCCTGTGGGCATCAAGACCACAGCGACCGTGGTGCAAGCGTCAACATCGCCGTGAAAGGCGTGAAGAAACTCGATTGGAATGTG
CCTGCTCTCAACAGCCTTCCCGTTGTTCGGAAGGTGCGACGGCAGGCATCGGGGCTTGTGGACAGCCCGACCGTGACCCACCCGACCGCCCGAGGCTATC
AGGCCGATGGTCAGGTGGGAGTATCTGATTAAACCACGGGAAGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC
AGACTGTTCCTGCCGTTCCAATGTAGTACGACCGTTCCCAGAATCCACCACCCCACAAATACTCCTCTAAGAACGACTCGTGCTGTTCCCACATCTCCCG
CGCCGTGATGCTCTTGACAGTCCGTGCAATCTCGCTCGGCGCGTGTTTCGGGTGGGCGGAGAGGAACAAATGTACGTGGTCGGGAGAGATGTGGAGCGAC
AGTATCTCGTAATCATACTCGTCACACACGTCGCGGAAACTCGTTTCCAACGAATCCTCGATGGGTTCGAGAATCGCGTGACGGTACTTCGGACACCACA
CGAAGTGGTAGTTGACGTTGTACACTGTGTGATTCGACTGCTTCTCACCCATATCGAACCCACTCCACCAACACAGTTAAGTATATACAAAGGATATACG
AAAGTATGGCGAATCGCTTTGAAATCGACGGCGAGGAAGTTCTCGACGGTGAAGTCAAACCGTTCGGGAATAGTGCCCACGTCACCGTCCCTAAACGCTG
GCGTGGGGCCGACGTGAAAGTCGTCCGAACCTCAGAACCCACCGAACAAGACGAAGAATGACCGACTCACAGGCTCTCGTCAAGACTCTGGACTTCCAAC
TCAACATCCAGAGTGACAACGAGAGCCTGTTGTACGACGCCACGCTTGAAGCCCGCTCGGTGTACAACGAAACCACCCGTCTCGCCAAAGAAGGTGTGGA
CTGGAACGCGATTCCCGACCGCGTAGCCGACGACGCCAACCTCGTGAAAAACACGACTCAGCGCGTTGTCGCCAAGGCTCTCGGAGCGATGGAGAACTAC
TACGAGTACGACGACTTCGGACTCCCCAGTCACACCAAGGGTGGTTCGTACCCGCTTCGTGCGAACTACGAGGAGGGGTACAACCTGTCGCTCACCGACG
ATGGCGACGTGGCGTTCCGAATCAGCGCGAAACCGTACAAGCACGTCAAGGGCGTCCTCAAAGGGAGTGACGCTCACCTCGACATTCTCAAGATCGCGCT
CGAAAACGACGAGTGGAAGATTGGGACGGCGGAAGCCCTGTTCCACAACGACAACGCCGAACTACACGTTAACGTTACCAACACCGAGCAGACCGTGCGA
GACAAGCACGACTCGCGGACGGTCGTCGGCGTGGATGTGAACGAGGACAACGTGGCTCTCACCGCTCTCTCAGAGGATGGTGTCGAAGACACGTTGGTTA
TCGACTTTCCCGAAATCAAGTTCGAGCGCCACCGCTACTTCACGATGCGAAAGCGTGTTCAGAACGCGGGGAAAGACAGCATCCACGACACACTCGAAGG
GCGTGAAGAACGGTTTGTCCGCGACCGACTCCACAAGGTAAGCCGTCACATCGTGGAGTGGAGCCGTCAGTTCGAGAAGCCGTGCATCGTCTTTGAAGAC
CTCAAAGAGATGCGCGACAGTATCGACTACGGCACGCGGATGAACCGACGGTTGCACCACCTTCCCTTCCGCGCCCTCCAGTTCTATACATCGTACAAGG
CGTCGTTCGAGGGTATCCCGACTGCGTGGATTAACCCCGAATACACTAGCCAGCGGTGTCCGATGTGCGGACACGCCGAGCGTGCGAACCGCAACAAGAA
GCGGTTCAAGTGCAAGTCCTGTGGGCATCAAGACCACAGCGACCGTGGTGCAAGCGTCAACATCGCCGTGAAAGGCGTGAAGAAACTCGATTGGAATGTG
CCTGCTCTCAACAGCCTTCCCGTTGTTCGGAAGGTGCGACGGCAGGCATCGGGGCTTGTGGACAGCCCGACCGTGACCCACCCGACCGCCCGAGGCTATC
AGGCCGATGGTCAGGTGGGAGTATCTGATTAAACCACGGGAAGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 452 | 54 | - | No |
Chemistry : Y1
ORF sequence :
MGEKQSNHTVYNVNYHFVWCPKYRHAILEPIEDSLETSFRDVCDEYDYEILSLHISPDHVHLFLSAHPKHAPSEIARTVKSITAREMWEQHESFLEEYLW
GGGFWERSYYIGTAGTVSTGTIERYIERTEHV
GGGFWERSYYIGTAGTVSTGTIERYIERTEHV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 658 | 1932 | + | No |
AG : TnpB
ORF sequence :
MTDSQALVKTLDFQLNIQSDNESLLYDATLEARSVYNETTRLAKEGVDWNAIPDRVADDANLVKNTTQRVVAKALGAMENYYEYDDFGLPSHTKGGSYPL
RANYEEGYNLSLTDDGDVAFRISAKPYKHVKGVLKGSDAHLDILKIALENDEWKIGTAEALFHNDNAELHVNVTNTEQTVRDKHDSRTVVGVDVNEDNVA
LTALSEDGVEDTLVIDFPEIKFERHRYFTMRKRVQNAGKDSIHDTLEGREERFVRDRLHKVSRHIVEWSRQFEKPCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQFYTSYKASFEGIPTAWINPEYTSQRCPMCGHAERANRNKKRFKCKSCGHQDHSDRGASVNIAVKGVKKLDWNVPALNSLPVVRKVRRQASGL
VDSPTVTHPTARGYQADGQVGVSD
RANYEEGYNLSLTDDGDVAFRISAKPYKHVKGVLKGSDAHLDILKIALENDEWKIGTAEALFHNDNAELHVNVTNTEQTVRDKHDSRTVVGVDVNEDNVA
LTALSEDGVEDTLVIDFPEIKFERHRYFTMRKRVQNAGKDSIHDTLEGREERFVRDRLHKVSRHIVEWSRQFEKPCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQFYTSYKASFEGIPTAWINPEYTSQRCPMCGHAERANRNKKRFKCKSCGHQDHSDRGASVNIAVKGVKKLDWNVPALNSLPVVRKVRRQASGL
VDSPTVTHPTARGYQADGQVGVSD
Blast result :
Comments
ISHel2 is 93% (TnpA : the transposase) aa similar to ISH36 and 96% (TnpB) aa similar to ISHma7.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.