ISHas1
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ARQA01000287 | ND | Halonotius sp. | Halonotius sp. J07HN6 |
DNA section
IS Length : 1955 bp
Ends
Left end : AGATAAACAAGGCGAGTGCCTCGGGGGTTGACCCCGAGGGTGAAGCCGACACTCAGACGTGTTCTGTTCGTTCGATATACTGTTCAATCGTCTCGTTGGA II struct. : No
Right end : GTGACCCACGACACCGTTCAAGGCTATCAGACCGATGGTGTCGCGGGCGTGTCCGACTAATCCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGAGGACGAGTT | CTAC | ATTTCAGTGTTT |
DNA sequence
AGATAAACAAGGCGAGTGCCTCGGGGGTTGACCCCGAGGGTGAAGCCGACACTCAGACGTGTTCTGTTCGTTCGATATACTGTTCAATCGTCTCGTTGGA
TACCTGCCCCGCCGTTCCGATGTAGTACGACTGCTCCCAGAACCCACTCCCCCACAGATATTCTTTCAAGAACGATTCGTGCTGTTCCCACATCTCCCGA
GCCGTGATGCTCTTGACAGTCCGTGCGATCTCGCTCGGCGCGTGCTTCGGGAGGCCTGACAGAAACAGGTGTACGTCGTCGGGTGATATATGGAGTGATA
GAATCTCGTAGCCATACTCCTCACACACATCTCGGAAACTCGCTTCCAGCGAATCGTCGATTGGGTTGAGAATCGCGTGGCGATACTTCGGACACCACAC
GAAGTGGTAGTTGACGTTGTATACCGTATGGTTCGACCGTTTCTCACCCATACAGACAGTACGTGGGCAATAGTTAAGTATTTCAGTATCTAAGTAAGTG
TGTGAGATGACGAAACGACTGTCCGTAGACTTCGAGGACGATGTGTACAAGGAGTTCTCGAAGAAGTGCATCGACGTTGATGAAACCAAGTCCGACGTAG
TGCGCGGACTCGTCACCGACTGGCTCAACGAAATAGAAGAATGACTGACGCACAGGTTCTCGTCAAGACGCTGGACTTCCAACTCGACATCCAGAGTGGC
AATGAGAACCTGCTGCACGACGCCTGTCTCGAAGCACGGTCGGTGTACAATGAAACCATCCGCCTCGCCAAACAGGGCGTGGACTGGGATGCAATTCCTG
ACCTCGTGGCCGACGACGCCGATCTCGTGAAGAACACGACGCAGCGCGTCGTTGCGAAGACACTCGGCGCGATGGAGAACTACTACGAGTACGACGACTT
CGGCCAGCCGAGCCACACCAAGGACGGCGCGTACCCGCTTCGAGCCAACTACGAAGAAGGGTACAACCTGTCGCTCACCGACGACGGCGACGTGGCGTTC
CGCATCAGCGCGAAACCGTACAAGCACGTCAAAGGTGTCCTCGACGGTGACGACGCCCACCTCGACATTCTCAAGACCGCACTCGAAAGCGACGAGTGGA
AGATTGGAACGGCAGAAGCTCTGTTTCACAACGACAACGCCGAGCTGCACGTCAACGTCATCAACACCGAGCAGACCGTCCGCGACAAGCAGGACTCACA
GACTGTCGTTGGTGTGGACGTGAATGAGGACAACGTGGCTCTGACCGCGCTCTCCGAGAACGGTGTCGAAGATACGTTGGTCATCGACTTCCCCGAAATC
AAGTTCGAGCGTCACCGCTATTTCACGATGCGGAAGCGCGTGCAGAACGCGGGGAAAGAGAGCATCCACGACACGCTGGGAGGGCGTGAGGAACGGTTCG
TCCGCGACCGACTCCACAAGGTATCTCGGCACATCGTGGAGTGGAGCCGTCAGTTCGAGAGGCCGTGCATCGTCTTTGAAGACCTCAAAGAGATGCGCGA
CAGTATCGACTACGGCACACGGATGAACCGACGCTTGCACCACCTGCCGTTCCGCGCGCTTCAGTTTTATACGTCGTACAAGGCGTCGTTCGAGGGTATC
CCGACGGGCTGGATTGACCCGTACAAGACAAGTCAACGGTGTCCGATGTGCGGGCACGCCGAGCGAGCGAACCGCAACAAAAAGCGGTTCAACTGTCGCT
CGTGTTCTCATCAAGACCACAGCGACCGTGGTGCAAGCGTCAATATCGCCGTGAAAGGTATCAAGAAGCTTGATTGGAATGTGCCTGCTCTCAACAGCCT
CCCCCAAGTTCGGAAGGTGCGACGGCAGGCATCGGGGGCCGTGGACGCCCCGACCGTGACCCACGACACCGTTCAAGGCTATCAGACCGATGGTGTCGCG
GGCGTGTCCGACTAATCCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC
TACCTGCCCCGCCGTTCCGATGTAGTACGACTGCTCCCAGAACCCACTCCCCCACAGATATTCTTTCAAGAACGATTCGTGCTGTTCCCACATCTCCCGA
GCCGTGATGCTCTTGACAGTCCGTGCGATCTCGCTCGGCGCGTGCTTCGGGAGGCCTGACAGAAACAGGTGTACGTCGTCGGGTGATATATGGAGTGATA
GAATCTCGTAGCCATACTCCTCACACACATCTCGGAAACTCGCTTCCAGCGAATCGTCGATTGGGTTGAGAATCGCGTGGCGATACTTCGGACACCACAC
GAAGTGGTAGTTGACGTTGTATACCGTATGGTTCGACCGTTTCTCACCCATACAGACAGTACGTGGGCAATAGTTAAGTATTTCAGTATCTAAGTAAGTG
TGTGAGATGACGAAACGACTGTCCGTAGACTTCGAGGACGATGTGTACAAGGAGTTCTCGAAGAAGTGCATCGACGTTGATGAAACCAAGTCCGACGTAG
TGCGCGGACTCGTCACCGACTGGCTCAACGAAATAGAAGAATGACTGACGCACAGGTTCTCGTCAAGACGCTGGACTTCCAACTCGACATCCAGAGTGGC
AATGAGAACCTGCTGCACGACGCCTGTCTCGAAGCACGGTCGGTGTACAATGAAACCATCCGCCTCGCCAAACAGGGCGTGGACTGGGATGCAATTCCTG
ACCTCGTGGCCGACGACGCCGATCTCGTGAAGAACACGACGCAGCGCGTCGTTGCGAAGACACTCGGCGCGATGGAGAACTACTACGAGTACGACGACTT
CGGCCAGCCGAGCCACACCAAGGACGGCGCGTACCCGCTTCGAGCCAACTACGAAGAAGGGTACAACCTGTCGCTCACCGACGACGGCGACGTGGCGTTC
CGCATCAGCGCGAAACCGTACAAGCACGTCAAAGGTGTCCTCGACGGTGACGACGCCCACCTCGACATTCTCAAGACCGCACTCGAAAGCGACGAGTGGA
AGATTGGAACGGCAGAAGCTCTGTTTCACAACGACAACGCCGAGCTGCACGTCAACGTCATCAACACCGAGCAGACCGTCCGCGACAAGCAGGACTCACA
GACTGTCGTTGGTGTGGACGTGAATGAGGACAACGTGGCTCTGACCGCGCTCTCCGAGAACGGTGTCGAAGATACGTTGGTCATCGACTTCCCCGAAATC
AAGTTCGAGCGTCACCGCTATTTCACGATGCGGAAGCGCGTGCAGAACGCGGGGAAAGAGAGCATCCACGACACGCTGGGAGGGCGTGAGGAACGGTTCG
TCCGCGACCGACTCCACAAGGTATCTCGGCACATCGTGGAGTGGAGCCGTCAGTTCGAGAGGCCGTGCATCGTCTTTGAAGACCTCAAAGAGATGCGCGA
CAGTATCGACTACGGCACACGGATGAACCGACGCTTGCACCACCTGCCGTTCCGCGCGCTTCAGTTTTATACGTCGTACAAGGCGTCGTTCGAGGGTATC
CCGACGGGCTGGATTGACCCGTACAAGACAAGTCAACGGTGTCCGATGTGCGGGCACGCCGAGCGAGCGAACCGCAACAAAAAGCGGTTCAACTGTCGCT
CGTGTTCTCATCAAGACCACAGCGACCGTGGTGCAAGCGTCAATATCGCCGTGAAAGGTATCAAGAAGCTTGATTGGAATGTGCCTGCTCTCAACAGCCT
CCCCCAAGTTCGGAAGGTGCGACGGCAGGCATCGGGGGCCGTGGACGCCCCGACCGTGACCCACGACACCGTTCAAGGCTATCAGACCGATGGTGTCGCG
GGCGTGTCCGACTAATCCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 451 | 53 | - | No |
Chemistry : Y1
ORF sequence :
MGEKRSNHTVYNVNYHFVWCPKYRHAILNPIDDSLEASFRDVCEEYGYEILSLHISPDDVHLFLSGLPKHAPSEIARTVKSITAREMWEQHESFLKEYLW
GSGFWEQSYYIGTAGQVSNETIEQYIERTEHV
GSGFWEQSYYIGTAGQVSNETIEQYIERTEHV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 641 | 1915 | + | No |
AG : TnpB
ORF sequence :
MTDAQVLVKTLDFQLDIQSGNENLLHDACLEARSVYNETIRLAKQGVDWDAIPDLVADDADLVKNTTQRVVAKTLGAMENYYEYDDFGQPSHTKDGAYPL
RANYEEGYNLSLTDDGDVAFRISAKPYKHVKGVLDGDDAHLDILKTALESDEWKIGTAEALFHNDNAELHVNVINTEQTVRDKQDSQTVVGVDVNEDNVA
LTALSENGVEDTLVIDFPEIKFERHRYFTMRKRVQNAGKESIHDTLGGREERFVRDRLHKVSRHIVEWSRQFERPCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQFYTSYKASFEGIPTGWIDPYKTSQRCPMCGHAERANRNKKRFNCRSCSHQDHSDRGASVNIAVKGIKKLDWNVPALNSLPQVRKVRRQASGA
VDAPTVTHDTVQGYQTDGVAGVSD
RANYEEGYNLSLTDDGDVAFRISAKPYKHVKGVLDGDDAHLDILKTALESDEWKIGTAEALFHNDNAELHVNVINTEQTVRDKQDSQTVVGVDVNEDNVA
LTALSENGVEDTLVIDFPEIKFERHRYFTMRKRVQNAGKESIHDTLGGREERFVRDRLHKVSRHIVEWSRQFERPCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQFYTSYKASFEGIPTGWIDPYKTSQRCPMCGHAERANRNKKRFNCRSCSHQDHSDRGASVNIAVKGIKKLDWNVPALNSLPQVRKVRRQASGA
VDAPTVTHDTVQGYQTDGVAGVSD
Blast result :
Comments
ISHas1 is 92% (TnpA : the transposase) aa similar to ISH36 and 94% aa (TnpB) similar to ISHma7.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Podell,S., Ugalde,J.A., Narasingarao,P., Banfield,J.F., Heidelberg,K.B. and Allen,E.E.(2013) PLoS ONE 8 (4), E61692
2] Podell,S., Ugalde,J.A., Narasingarao,P., Banfield,J.F., Heidelberg,K.B. and Allen,E.E.(2013) PLoS ONE 8 (4), E61692