ISHaca1
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLS01000016 | ND | Haloarcula californiae | Haloarcula californiae ATCC 33799 |
DNA section
IS Length : 1964 bp
Ends
Left end : CAGGCGGAACAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAAGCCGTAAGCTCGGCTAAACGTGTTCCGTTCGCTCAATGTACTGTTCAATCGTA II struct. : No
Right end : GTGGCCTCTGATACCGTTCGAGGCGACCAGACCAATGGTATCCGAGGCGTGTCCGACTAACCCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGTCCTACGAAA | TCTA | CATCGAGCGTAT |
DNA sequence
CAGGCGGAACAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAAGCCGTAAGCTCGGCTAAACGTGTTCCGTTCGCTCAATGTACTGTTCAATCGTA
TCGGTCGAAACGTCCCCGGCCGTCCCGACGTAGTACGATTCTTCCCAGAAACCTCCACCCCATAGATATTCTTGTAACAGGAATTCGTGTTGTTGCCACA
TCTCTCGTGCTGTAATACTCTTGACTGTCCGTACAATCTTGCTCGGAGCGTGTTTGGGATGTGTCGACAGGAACAGGTGTACGTGGTCGGGTGAGGTGTG
CAACGACAGTATCTCATAGTTGTACTTGTCGCACACCTCTCGAAAACTCGATTCTAGTGAATCTTCTATCACGCCCAGTATCGGGTGTCGATACTTTGGA
CACCACACAAAGTGGTAGTTGACGTTGTATACCGTGTGGTTTGAGCGTTTCTCGCCCATACAGACAGTACGTGGACAATTTTTAAGTATCTCAGTAAATA
AGCAGTGTCTGTGAAATGACTAAACGACTTACCGTGGACTTGGAGGACGAGTTATACAAGGAGTTCTCGAAGAAATGCATTGACGCTGAGAAAACCAAGT
CCGAAGTCGTGCGTGGGCTCGTCCAAGACTGGGTAAACGACCAAGAATGACGCAGACACAGGCTCTCACCAAGACACTCGTGTTCCCGCTTGACGTGCAG
AGTGGCAACGAGAGCCTGCTTCACGACGCCCGCTTGGAGTGTCGCCGCGTGTTCAATGAAGTGCTACGCCTCAACTACGACGGGTGGGACTGGGACGAGA
TAGAAGATGTTGTCGAGCAGAACGCAGACCTCGTGCAAAACACCGCACAGCGCATCATCAACAAAGCCTTCGACGCACTCAACAACTACTACGACTACGA
CGACTGGGGACGCCCGTGGTACAAGCACGAAACGTTCCCGTTGCGGATGAACTACGGCGAAGGCTATAACCTCTTTCTCGGAGACGAAACGGTGCGGTTC
CGCATCAGTGCGAAACCGTACAATCACGTCAAAGGCGAACTGTGCGGCACACAAGACCAGTTCGACCTGCTCACACAGGCGATGGAAGATGATGACTGGC
ACATTGGTACCGCCGAGGCGCTTGCCCGAAACGAACGCGAAGAATTGCACGTCACCGTCACGAACGAAACCGCCGAAGTTGGTGCAAAAACAGCGGCAGA
AACAGTCATCGGCGTCGATATTAACGAAGACTGTGTTGCGCTAGCGGCACTGACCGAGAGCGGTATCGAAGATTCAATCGTTATCGACTACCCAGAAATC
AAAGAAGAACGACATCGGTACTTCACGATGCGGAAGCGGATGCAGGAAGCCAGACAGACCGCGTTCAACGACGTGTTCCGTGACAAGGAACAACGGTTCG
TTCACGACCAGCTACACACGGTGTCACGGCGCGTAGTCGAGTGGATGCAACGGTTCGACAGTCCTGTGATTGTCTTCGAAGACCTCGAAGACATGCGAGA
CGACATTGAATACGGGACTCGAATGAACCGCCGTCTGCACTCGATTCCGTTCGCCAAACTCCGTGATTTCATCACGTACAAGGCGGCGTGGCAAGGGATT
CCGTCAGATGATGTTGACCCGGAGTACACCAGCCAGCAATGCCCACTGTGTGGACACACAGAACGGGCGAACCGCCACAAGAAACGGTTCAAGTGCTGTG
AGTGCGAGCATCAAGACCACGCCGACCGTGGCGCTGGTGTGAGTGTCGCGCAGAAATGGCTACGAAAGCAAGACAATAGAGATGTGCCTGCTCTCAACAC
ACTCCCGCAAGTGCGGAAGTGGGAGTTGCGACGGCAGGCATCGGGGCCTGTGGACGGCCCGACCGTGGCCTCTGATACCGTTCGAGGCGACCAGACCAAT
GGTATCCGAGGCGTGTCCGACTAACCCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC
TCGGTCGAAACGTCCCCGGCCGTCCCGACGTAGTACGATTCTTCCCAGAAACCTCCACCCCATAGATATTCTTGTAACAGGAATTCGTGTTGTTGCCACA
TCTCTCGTGCTGTAATACTCTTGACTGTCCGTACAATCTTGCTCGGAGCGTGTTTGGGATGTGTCGACAGGAACAGGTGTACGTGGTCGGGTGAGGTGTG
CAACGACAGTATCTCATAGTTGTACTTGTCGCACACCTCTCGAAAACTCGATTCTAGTGAATCTTCTATCACGCCCAGTATCGGGTGTCGATACTTTGGA
CACCACACAAAGTGGTAGTTGACGTTGTATACCGTGTGGTTTGAGCGTTTCTCGCCCATACAGACAGTACGTGGACAATTTTTAAGTATCTCAGTAAATA
AGCAGTGTCTGTGAAATGACTAAACGACTTACCGTGGACTTGGAGGACGAGTTATACAAGGAGTTCTCGAAGAAATGCATTGACGCTGAGAAAACCAAGT
CCGAAGTCGTGCGTGGGCTCGTCCAAGACTGGGTAAACGACCAAGAATGACGCAGACACAGGCTCTCACCAAGACACTCGTGTTCCCGCTTGACGTGCAG
AGTGGCAACGAGAGCCTGCTTCACGACGCCCGCTTGGAGTGTCGCCGCGTGTTCAATGAAGTGCTACGCCTCAACTACGACGGGTGGGACTGGGACGAGA
TAGAAGATGTTGTCGAGCAGAACGCAGACCTCGTGCAAAACACCGCACAGCGCATCATCAACAAAGCCTTCGACGCACTCAACAACTACTACGACTACGA
CGACTGGGGACGCCCGTGGTACAAGCACGAAACGTTCCCGTTGCGGATGAACTACGGCGAAGGCTATAACCTCTTTCTCGGAGACGAAACGGTGCGGTTC
CGCATCAGTGCGAAACCGTACAATCACGTCAAAGGCGAACTGTGCGGCACACAAGACCAGTTCGACCTGCTCACACAGGCGATGGAAGATGATGACTGGC
ACATTGGTACCGCCGAGGCGCTTGCCCGAAACGAACGCGAAGAATTGCACGTCACCGTCACGAACGAAACCGCCGAAGTTGGTGCAAAAACAGCGGCAGA
AACAGTCATCGGCGTCGATATTAACGAAGACTGTGTTGCGCTAGCGGCACTGACCGAGAGCGGTATCGAAGATTCAATCGTTATCGACTACCCAGAAATC
AAAGAAGAACGACATCGGTACTTCACGATGCGGAAGCGGATGCAGGAAGCCAGACAGACCGCGTTCAACGACGTGTTCCGTGACAAGGAACAACGGTTCG
TTCACGACCAGCTACACACGGTGTCACGGCGCGTAGTCGAGTGGATGCAACGGTTCGACAGTCCTGTGATTGTCTTCGAAGACCTCGAAGACATGCGAGA
CGACATTGAATACGGGACTCGAATGAACCGCCGTCTGCACTCGATTCCGTTCGCCAAACTCCGTGATTTCATCACGTACAAGGCGGCGTGGCAAGGGATT
CCGTCAGATGATGTTGACCCGGAGTACACCAGCCAGCAATGCCCACTGTGTGGACACACAGAACGGGCGAACCGCCACAAGAAACGGTTCAAGTGCTGTG
AGTGCGAGCATCAAGACCACGCCGACCGTGGCGCTGGTGTGAGTGTCGCGCAGAAATGGCTACGAAAGCAAGACAATAGAGATGTGCCTGCTCTCAACAC
ACTCCCGCAAGTGCGGAAGTGGGAGTTGCGACGGCAGGCATCGGGGCCTGTGGACGGCCCGACCGTGGCCTCTGATACCGTTCGAGGCGACCAGACCAAT
GGTATCCGAGGCGTGTCCGACTAACCCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 459 | 61 | - | No |
Chemistry : Y1
ORF sequence :
MGEKRSNHTVYNVNYHFVWCPKYRHPILGVIEDSLESSFREVCDKYNYEILSLHTSPDHVHLFLSTHPKHAPSKIVRTVKSITAREMWQQHEFLLQEYLW
GGGFWEESYYVGTAGDVSTDTIEQYIERTEHV
GGGFWEESYYVGTAGDVSTDTIEQYIERTEHV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1278 bp | 425 aa | 647 | 1924 | + | No |
AG : TnpB
ORF sequence :
MTQTQALTKTLVFPLDVQSGNESLLHDARLECRRVFNEVLRLNYDGWDWDEIEDVVEQNADLVQNTAQRIINKAFDALNNYYDYDDWGRPWYKHETFPLR
MNYGEGYNLFLGDETVRFRISAKPYNHVKGELCGTQDQFDLLTQAMEDDDWHIGTAEALARNEREELHVTVTNETAEVGAKTAAETVIGVDINEDCVALA
ALTESGIEDSIVIDYPEIKEERHRYFTMRKRMQEARQTAFNDVFRDKEQRFVHDQLHTVSRRVVEWMQRFDSPVIVFEDLEDMRDDIEYGTRMNRRLHSI
PFAKLRDFITYKAAWQGIPSDDVDPEYTSQQCPLCGHTERANRHKKRFKCCECEHQDHADRGAGVSVAQKWLRKQDNRDVPALNTLPQVRKWELRRQASG
PVDGPTVASDTVRGDQTNGIRGVSD
MNYGEGYNLFLGDETVRFRISAKPYNHVKGELCGTQDQFDLLTQAMEDDDWHIGTAEALARNEREELHVTVTNETAEVGAKTAAETVIGVDINEDCVALA
ALTESGIEDSIVIDYPEIKEERHRYFTMRKRMQEARQTAFNDVFRDKEQRFVHDQLHTVSRRVVEWMQRFDSPVIVFEDLEDMRDDIEYGTRMNRRLHSI
PFAKLRDFITYKAAWQGIPSDDVDPEYTSQQCPLCGHTERANRHKKRFKCCECEHQDHADRGAGVSVAQKWLRKQDNRDVPALNTLPQVRKWELRRQASG
PVDGPTVASDTVRGDQTNGIRGVSD
Blast result :
Comments
ISHaca1 is 96% (TnpA : the transposase) aa similar to ISHti1 and 95% (TnpB) aa similar to ISHwa17.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.