ISHez3
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ATXS01000001 | ND | Halorubrum ezzemoulense | Halorubrum ezzemoulense DSM 17463 |
DNA section
IS Length : 1955 bp
Ends
Left end : CAGGCGGAGCAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGGCCGTACGCTCCGCTAAACGTGTTCCGTTCGCTCGATATACTGTTCAATAGTG II struct. : No
Right end : GTGACCCACGACACCGCTAGAGGGTATCAGACCGATGGTGTCGTGGGAGTGTCCGACTGACCCACGGGAAGCCTCGGGGCTTGACGCCGAGGCGGTTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AACTGACGGCCG | TCTA | CTGATCTAGTGT |
DNA sequence
CAGGCGGAGCAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGGCCGTACGCTCCGCTAAACGTGTTCCGTTCGCTCGATATACTGTTCAATAGTG
CCGGTCGAAACATCGCCTGCCGTCCCAACGTAGTACGATTCCTCCCAGAATCCACCGCCCCACAGGTAGTCTTCCAAGAACGCTTCGTGCTGTTCCCACA
TCTCCCGCGCTGTGATGCTTTTGACCGTCCGTACAATCTCGCTCGGTGAGTGCTTCGGGTGAGCGGAGACAAACAGATGTACGTGGTCGGGCGAGATGTG
TAGCGACAGTATCTCGTAGCCGTATTCGTCGCACACGTCGCGGAAACTTGCTTCCAGCGATTTCTCGATTGGTGCGAGTATCGCGTGGCGGTACTTCGGC
CACCACACGAAGTGGTAGTTGACGTTGTACACCGTGTGGTTAGACCGCTTCTCACCCATACAGACAGTACTTGGACAAGAATTAAGTATTTCAGTAAGAG
TGTGAGATGACGAAACGACTGTCCGTGGACTTCGAGGACGATGTGTACAAGGAGTTCTCGAAGAAGTGCATCGAGGTTGACGAAACCAAGTCCGACGTAG
TGCGCGGACTCGTCAACGACTGGCTCGACGAATCCGGAGGATGACCGACGCACAGGCCCTCGTCAAGACGCTGGACTTCCAACTCGACATCCAGAGTGAC
AACGGGGGCCTGCTATACGATGCCACCCTCGAAGCCCGCTCAGTATACAACGAAACTATCCGACTCGCCAAAGATGGCGTGGACTGGGACACCATTCCCG
ACCGAGTAGCCGACGACGCTAACCTCGTGAAGAACACGACTCAGCGCGTCGTCGCCAAAGCACTCGGAGCGATGGAGAACTACTACGAGTACGACGACTT
CGGCCAGCCAAGTCACACCAAGGACGGTGCGTACCCGCTTCGTGCGAACTACGAGGAAGGGTACAATCTGTCGCTCACCGATGGCGGTGACGTGGTGTTC
CGCATCAGCGCGAAGCCGTACAACCACGTCAGGGGCGTCCTCAAAGGAAGTGACGCCAACCTCGACATTCTCCAGACCGCACTCGAAAGCGACGAGTGGA
AGATTGGGACGGCTGAAGCCCTGTTCCACAACGATACCCCTGAGTTGCACGTCAACGTCACCAACACCGAACAGACCGTTCGAGGCAAGCAGGACTCGCG
GACGGTCGTCGGTGTGGACGTGAACGAGGACAACGTAGCCCTCACCGCTCTGTCCGAAGATGGCGTTGAGGACACGTTGGTCATCAGCTTCCCCGAAATC
AAGTTCGAGCGTCACCGCTACTTCACGATGCGGAAGCGTGTGCAGAACGCGGGGAAAGACAGCATCCACGACACCCTCAAAGGGCGCGAAGAACGGTTTG
TCCGCGATCGACTCCACAAGGTGTCTCAGCATATCGTGGAGTGGAGCCGTCAGTTCGAGAAACCGTGTATCGTCTTTGAAGACCTCAAAGAGATGCGCGA
CAGTATCGACTACGGCACGCGAATGAACCGACGCTTGCATCACCTCCCCTTCCGCGCTCTCCAGTTCTATACGTCGTACAAGGCGGCTTTCGGAGGCATT
CCGACCGCGTGGATTAACCCCGGGTACACGAGCCAGCGGTGTCCGATGTGCGGACACACGGAGCGTGCGAACCGCAATAAGAAGCGGTTCAAGTGCAAGG
ACTGTGAACATCAAGACCACAGCGACCGTGGTGCAAGCGTCAATATCGCCGTGAAAGGCAGCAAGAAACTCGATTGGAATGTGCCTGCTCTCAACAGCCT
TCCCGTTGTTCGGACGGTGCGACGGCAGGCATCGGGGGCCGTGGACGCCCCGACCGTGACCCACGACACCGCTAGAGGGTATCAGACCGATGGTGTCGTG
GGAGTGTCCGACTGACCCACGGGAAGCCTCGGGGCTTGACGCCGAGGCGGTTCAC
CCGGTCGAAACATCGCCTGCCGTCCCAACGTAGTACGATTCCTCCCAGAATCCACCGCCCCACAGGTAGTCTTCCAAGAACGCTTCGTGCTGTTCCCACA
TCTCCCGCGCTGTGATGCTTTTGACCGTCCGTACAATCTCGCTCGGTGAGTGCTTCGGGTGAGCGGAGACAAACAGATGTACGTGGTCGGGCGAGATGTG
TAGCGACAGTATCTCGTAGCCGTATTCGTCGCACACGTCGCGGAAACTTGCTTCCAGCGATTTCTCGATTGGTGCGAGTATCGCGTGGCGGTACTTCGGC
CACCACACGAAGTGGTAGTTGACGTTGTACACCGTGTGGTTAGACCGCTTCTCACCCATACAGACAGTACTTGGACAAGAATTAAGTATTTCAGTAAGAG
TGTGAGATGACGAAACGACTGTCCGTGGACTTCGAGGACGATGTGTACAAGGAGTTCTCGAAGAAGTGCATCGAGGTTGACGAAACCAAGTCCGACGTAG
TGCGCGGACTCGTCAACGACTGGCTCGACGAATCCGGAGGATGACCGACGCACAGGCCCTCGTCAAGACGCTGGACTTCCAACTCGACATCCAGAGTGAC
AACGGGGGCCTGCTATACGATGCCACCCTCGAAGCCCGCTCAGTATACAACGAAACTATCCGACTCGCCAAAGATGGCGTGGACTGGGACACCATTCCCG
ACCGAGTAGCCGACGACGCTAACCTCGTGAAGAACACGACTCAGCGCGTCGTCGCCAAAGCACTCGGAGCGATGGAGAACTACTACGAGTACGACGACTT
CGGCCAGCCAAGTCACACCAAGGACGGTGCGTACCCGCTTCGTGCGAACTACGAGGAAGGGTACAATCTGTCGCTCACCGATGGCGGTGACGTGGTGTTC
CGCATCAGCGCGAAGCCGTACAACCACGTCAGGGGCGTCCTCAAAGGAAGTGACGCCAACCTCGACATTCTCCAGACCGCACTCGAAAGCGACGAGTGGA
AGATTGGGACGGCTGAAGCCCTGTTCCACAACGATACCCCTGAGTTGCACGTCAACGTCACCAACACCGAACAGACCGTTCGAGGCAAGCAGGACTCGCG
GACGGTCGTCGGTGTGGACGTGAACGAGGACAACGTAGCCCTCACCGCTCTGTCCGAAGATGGCGTTGAGGACACGTTGGTCATCAGCTTCCCCGAAATC
AAGTTCGAGCGTCACCGCTACTTCACGATGCGGAAGCGTGTGCAGAACGCGGGGAAAGACAGCATCCACGACACCCTCAAAGGGCGCGAAGAACGGTTTG
TCCGCGATCGACTCCACAAGGTGTCTCAGCATATCGTGGAGTGGAGCCGTCAGTTCGAGAAACCGTGTATCGTCTTTGAAGACCTCAAAGAGATGCGCGA
CAGTATCGACTACGGCACGCGAATGAACCGACGCTTGCATCACCTCCCCTTCCGCGCTCTCCAGTTCTATACGTCGTACAAGGCGGCTTTCGGAGGCATT
CCGACCGCGTGGATTAACCCCGGGTACACGAGCCAGCGGTGTCCGATGTGCGGACACACGGAGCGTGCGAACCGCAATAAGAAGCGGTTCAAGTGCAAGG
ACTGTGAACATCAAGACCACAGCGACCGTGGTGCAAGCGTCAATATCGCCGTGAAAGGCAGCAAGAAACTCGATTGGAATGTGCCTGCTCTCAACAGCCT
TCCCGTTGTTCGGACGGTGCGACGGCAGGCATCGGGGGCCGTGGACGCCCCGACCGTGACCCACGACACCGCTAGAGGGTATCAGACCGATGGTGTCGTG
GGAGTGTCCGACTGACCCACGGGAAGCCTCGGGGCTTGACGCCGAGGCGGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 459 | 61 | - | No |
Chemistry : Y1
ORF sequence :
MGEKRSNHTVYNVNYHFVWWPKYRHAILAPIEKSLEASFRDVCDEYGYEILSLHISPDHVHLFVSAHPKHSPSEIVRTVKSITAREMWEQHEAFLEDYLW
GGGFWEESYYVGTAGDVSTGTIEQYIERTEHV
GGGFWEESYYVGTAGDVSTGTIEQYIERTEHV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 641 | 1915 | + | No |
AG : TnpB
ORF sequence :
MTDAQALVKTLDFQLDIQSDNGGLLYDATLEARSVYNETIRLAKDGVDWDTIPDRVADDANLVKNTTQRVVAKALGAMENYYEYDDFGQPSHTKDGAYPL
RANYEEGYNLSLTDGGDVVFRISAKPYNHVRGVLKGSDANLDILQTALESDEWKIGTAEALFHNDTPELHVNVTNTEQTVRGKQDSRTVVGVDVNEDNVA
LTALSEDGVEDTLVISFPEIKFERHRYFTMRKRVQNAGKDSIHDTLKGREERFVRDRLHKVSQHIVEWSRQFEKPCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQFYTSYKAAFGGIPTAWINPGYTSQRCPMCGHTERANRNKKRFKCKDCEHQDHSDRGASVNIAVKGSKKLDWNVPALNSLPVVRTVRRQASGA
VDAPTVTHDTARGYQTDGVVGVSD
RANYEEGYNLSLTDGGDVVFRISAKPYNHVRGVLKGSDANLDILQTALESDEWKIGTAEALFHNDTPELHVNVTNTEQTVRGKQDSRTVVGVDVNEDNVA
LTALSEDGVEDTLVISFPEIKFERHRYFTMRKRVQNAGKDSIHDTLKGREERFVRDRLHKVSQHIVEWSRQFEKPCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQFYTSYKAAFGGIPTAWINPGYTSQRCPMCGHTERANRNKKRFKCKDCEHQDHSDRGASVNIAVKGSKKLDWNVPALNSLPVVRTVRRQASGA
VDAPTVTHDTARGYQTDGVVGVSD
Blast result :
Comments
ISHez3 is 94% (TnpA : the transposase and TnpB) aa similar to ISH36.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct submission GenBank.
2] Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct submission GenBank.