ISHsr1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ALJD01000002 | ND | Halogranum salarium | Halogranum salarium B-1 |
DNA section
IS Length : 1452 bp
Ends
Left end : CTGGAAAGTAGGGTGCTAAGCCCCCTTCCTCAAGGAGCGAACAAAACGAAGTGGAGTGAGCGAGTAGGGAGGGGATACAGCACCCGCACGAGTTTCAGAC II struct. : Yes
Right end : TTCGTCCATCGTTGTGGATGCAAGTCGCGTCACAGAAGCAGGAAGCCCCGTCCTCAAGGAAGCAACACGCAGTGTTGCTGAGTAGGGCGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGGAGTCACGTT | TTAG | TCCGCTTCGACG | tcac |
DNA sequence
CTGGAAAGTAGGGTGCTAAGCCCCCTTCCTCAAGGAGCGAACAAAACGAAGTGGAGTGAGCGAGTAGGGAGGGGATACAGCACCCGCACGAGTTTCAGAC
ACCCTCACCCATACCATTACTACATCCTGTTCCGTATATTTTGACAAGTCGTATGGAGTACAGTCCACGCTTCCGCTTGTTGCCCACCGAGAAGCAACGC
GAAGACCTTGACTGGACGCGAAATACCGTACGACAAGTCTACAATCACGGCCTCTACCGATTCAACCAACTCGATGAATCCGAGGGGACCGTGAAACAAC
GAGTCCGACAAGTCCGCGACGAGCTACCCGCACTCAAAACGTGGTGGACAGACCTGAAAGACGTGTACTCGAAGGTCTTGCAAACTCACATCGAGCGCAT
CGCTCGAAACATCACCAACCTCGGGAAACTCAAAGCGAAAGGCTACAACGTCGGCTCGTTGAACTGGAAGAAACCACGAGAGTTCCGCAGTTTCACGTAC
AACCAATCGGGCTTCAAACTCGACCACAAGAGTGGCCCGAATGGACGTGGCAAGCTTCGACTCTCGAAAATCGGGTGGATTCCAATCCGTCTCCACCGCG
ACATCCTCGAAAGCGCAGAAATCACGGAAGTCACGGTGAAGAAAGAACCCACTGGCGCGTGGTACGCCAGCTTCTGCATCGACGTAGACGAACAGGATAA
ACCACCAGTCGAATCACTATCTATGGACGACTGTGTGGGTATCGACCTTGGTGTTCTCAACTTCATTCACGACTCGAATGGTGTTGTCGTTGACCGACTT
GACTTGCCTAATGACCGGGAACGACTCGAACGTGAGCAACGAGCATTGTCTCGTAAAGAGTATGAATCTCGCAACTGGGGCAAGCAACGCCGAAAGGTTG
CGAAAGTCCACGCTCGGATGAACGAGAAGAAGGGGGATTTCAAGAACAAACTCGCACACTATTACACGACCCACTACAAGGCGGTGTTCCTCGAAGACTT
GAACGTCCGGGGGATGGTCGAAGGACAGCAGAACGCGCGAAACAAGGCAGAATCTGGATGGCGTGACCTCATCACTATTTTCCAGCACCACGGCAAAAAG
AACGGGTGCTACGTGGTTACAGTCAACCCAGAAAATACGACTTTGGATTGCGCGTCGTGTGGAACGAGTGTGTACAAACCGTTGTGGGTTCGGGAACACT
CGTGCCCGACGTGTGGGTTTGAGACAGACAGAGATTGGAATGCGGCTCTCAACGTCCTCAGTCGAGGACTCAAGAAACTAGGAGTGGTTCACTCCGAAGA
AACGCCTGTGGAGACTGCAACCGCTGTGTCAACCGACGGTGGCGAGTATTCGTCCATCGTTGTGGATGCAAGTCGCGTCACAGAAGCAGGAAGCCCCGTC
CTCAAGGAAGCAACACGCAGTGTTGCTGAGTAGGGCGGGGTAGTTCAC
ACCCTCACCCATACCATTACTACATCCTGTTCCGTATATTTTGACAAGTCGTATGGAGTACAGTCCACGCTTCCGCTTGTTGCCCACCGAGAAGCAACGC
GAAGACCTTGACTGGACGCGAAATACCGTACGACAAGTCTACAATCACGGCCTCTACCGATTCAACCAACTCGATGAATCCGAGGGGACCGTGAAACAAC
GAGTCCGACAAGTCCGCGACGAGCTACCCGCACTCAAAACGTGGTGGACAGACCTGAAAGACGTGTACTCGAAGGTCTTGCAAACTCACATCGAGCGCAT
CGCTCGAAACATCACCAACCTCGGGAAACTCAAAGCGAAAGGCTACAACGTCGGCTCGTTGAACTGGAAGAAACCACGAGAGTTCCGCAGTTTCACGTAC
AACCAATCGGGCTTCAAACTCGACCACAAGAGTGGCCCGAATGGACGTGGCAAGCTTCGACTCTCGAAAATCGGGTGGATTCCAATCCGTCTCCACCGCG
ACATCCTCGAAAGCGCAGAAATCACGGAAGTCACGGTGAAGAAAGAACCCACTGGCGCGTGGTACGCCAGCTTCTGCATCGACGTAGACGAACAGGATAA
ACCACCAGTCGAATCACTATCTATGGACGACTGTGTGGGTATCGACCTTGGTGTTCTCAACTTCATTCACGACTCGAATGGTGTTGTCGTTGACCGACTT
GACTTGCCTAATGACCGGGAACGACTCGAACGTGAGCAACGAGCATTGTCTCGTAAAGAGTATGAATCTCGCAACTGGGGCAAGCAACGCCGAAAGGTTG
CGAAAGTCCACGCTCGGATGAACGAGAAGAAGGGGGATTTCAAGAACAAACTCGCACACTATTACACGACCCACTACAAGGCGGTGTTCCTCGAAGACTT
GAACGTCCGGGGGATGGTCGAAGGACAGCAGAACGCGCGAAACAAGGCAGAATCTGGATGGCGTGACCTCATCACTATTTTCCAGCACCACGGCAAAAAG
AACGGGTGCTACGTGGTTACAGTCAACCCAGAAAATACGACTTTGGATTGCGCGTCGTGTGGAACGAGTGTGTACAAACCGTTGTGGGTTCGGGAACACT
CGTGCCCGACGTGTGGGTTTGAGACAGACAGAGATTGGAATGCGGCTCTCAACGTCCTCAGTCGAGGACTCAAGAAACTAGGAGTGGTTCACTCCGAAGA
AACGCCTGTGGAGACTGCAACCGCTGTGTCAACCGACGGTGGCGAGTATTCGTCCATCGTTGTGGATGCAAGTCGCGTCACAGAAGCAGGAAGCCCCGTC
CTCAAGGAAGCAACACGCAGTGTTGCTGAGTAGGGCGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1278 bp | 426 aa | 157 | 1434 | + | No |
AG : TnpB
ORF sequence :
MEYSPRFRLLPTEKQREDLDWTRNTVRQVYNHGLYRFNQLDESEGTVKQRVRQVRDELPALKTWWTDLKDVYSKVLQTHIERIARNITNLGKLKAKGYNV
GSLNWKKPREFRSFTYNQSGFKLDHKSGPNGRGKLRLSKIGWIPIRLHRDILESAEITEVTVKKEPTGAWYASFCIDVDEQDKPPVESLSMDDCVGIDLG
VLNFIHDSNGVVVDRLDLPNDRERLEREQRALSRKEYESRNWGKQRRKVAKVHARMNEKKGDFKNKLAHYYTTHYKAVFLEDLNVRGMVEGQQNARNKAE
SGWRDLITIFQHHGKKNGCYVVTVNPENTTLDCASCGTSVYKPLWVREHSCPTCGFETDRDWNAALNVLSRGLKKLGVVHSEETPVETATAVSTDGGEYS
SIVVDASRVTEAGSPVLKEATRSVAE
GSLNWKKPREFRSFTYNQSGFKLDHKSGPNGRGKLRLSKIGWIPIRLHRDILESAEITEVTVKKEPTGAWYASFCIDVDEQDKPPVESLSMDDCVGIDLG
VLNFIHDSNGVVVDRLDLPNDRERLEREQRALSRKEYESRNWGKQRRKVAKVHARMNEKKGDFKNKLAHYYTTHYKAVFLEDLNVRGMVEGQQNARNKAE
SGWRDLITIFQHHGKKNGCYVVTVNPENTTLDCASCGTSVYKPLWVREHSCPTCGFETDRDWNAALNVLSRGLKKLGVVHSEETPVETATAVSTDGGEYS
SIVVDASRVTEAGSPVLKEATRSVAE
Blast result :
Comments
ISHsr1 is 82% (TnpB) aa similar to ISHal2.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Kim,K.K., Lee,K.C. and Lee,J.S.(2012)J. Bacteriol. 194 (23), 6659.
2] Kim,K.K., Lee,K.C. and Lee,J.S.(2012)J. Bacteriol. 194 (23), 6659.