ISHsr1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ALJD01000002 ND Halogranum salarium
Halogranum salarium B-1
DNA section
IS Length : 1452 bp

Ends


Left end : CTGGAAAGTAGGGTGCTAAGCCCCCTTCCTCAAGGAGCGAACAAAACGAAGTGGAGTGAGCGAGTAGGGAGGGGATACAGCACCCGCACGAGTTTCAGAC II struct. : Yes
Right end : TTCGTCCATCGTTGTGGATGCAAGTCGCGTCACAGAAGCAGGAAGCCCCGTCCTCAAGGAAGCAACACGCAGTGTTGCTGAGTAGGGCGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGGAGTCACGTTTTAGTCCGCTTCGACGtcac

DNA sequence

CTGGAAAGTAGGGTGCTAAGCCCCCTTCCTCAAGGAGCGAACAAAACGAAGTGGAGTGAGCGAGTAGGGAGGGGATACAGCACCCGCACGAGTTTCAGAC
ACCCTCACCCATACCATTACTACATCCTGTTCCGTATATTTTGACAAGTCGTATGGAGTACAGTCCACGCTTCCGCTTGTTGCCCACCGAGAAGCAACGC
GAAGACCTTGACTGGACGCGAAATACCGTACGACAAGTCTACAATCACGGCCTCTACCGATTCAACCAACTCGATGAATCCGAGGGGACCGTGAAACAAC
GAGTCCGACAAGTCCGCGACGAGCTACCCGCACTCAAAACGTGGTGGACAGACCTGAAAGACGTGTACTCGAAGGTCTTGCAAACTCACATCGAGCGCAT
CGCTCGAAACATCACCAACCTCGGGAAACTCAAAGCGAAAGGCTACAACGTCGGCTCGTTGAACTGGAAGAAACCACGAGAGTTCCGCAGTTTCACGTAC
AACCAATCGGGCTTCAAACTCGACCACAAGAGTGGCCCGAATGGACGTGGCAAGCTTCGACTCTCGAAAATCGGGTGGATTCCAATCCGTCTCCACCGCG
ACATCCTCGAAAGCGCAGAAATCACGGAAGTCACGGTGAAGAAAGAACCCACTGGCGCGTGGTACGCCAGCTTCTGCATCGACGTAGACGAACAGGATAA
ACCACCAGTCGAATCACTATCTATGGACGACTGTGTGGGTATCGACCTTGGTGTTCTCAACTTCATTCACGACTCGAATGGTGTTGTCGTTGACCGACTT
GACTTGCCTAATGACCGGGAACGACTCGAACGTGAGCAACGAGCATTGTCTCGTAAAGAGTATGAATCTCGCAACTGGGGCAAGCAACGCCGAAAGGTTG
CGAAAGTCCACGCTCGGATGAACGAGAAGAAGGGGGATTTCAAGAACAAACTCGCACACTATTACACGACCCACTACAAGGCGGTGTTCCTCGAAGACTT
GAACGTCCGGGGGATGGTCGAAGGACAGCAGAACGCGCGAAACAAGGCAGAATCTGGATGGCGTGACCTCATCACTATTTTCCAGCACCACGGCAAAAAG
AACGGGTGCTACGTGGTTACAGTCAACCCAGAAAATACGACTTTGGATTGCGCGTCGTGTGGAACGAGTGTGTACAAACCGTTGTGGGTTCGGGAACACT
CGTGCCCGACGTGTGGGTTTGAGACAGACAGAGATTGGAATGCGGCTCTCAACGTCCTCAGTCGAGGACTCAAGAAACTAGGAGTGGTTCACTCCGAAGA
AACGCCTGTGGAGACTGCAACCGCTGTGTCAACCGACGGTGGCGAGTATTCGTCCATCGTTGTGGATGCAAGTCGCGTCACAGAAGCAGGAAGCCCCGTC
CTCAAGGAAGCAACACGCAGTGTTGCTGAGTAGGGCGGGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1278 bp426 aa1571434+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEYSPRFRLLPTEKQREDLDWTRNTVRQVYNHGLYRFNQLDESEGTVKQRVRQVRDELPALKTWWTDLKDVYSKVLQTHIERIARNITNLGKLKAKGYNV
GSLNWKKPREFRSFTYNQSGFKLDHKSGPNGRGKLRLSKIGWIPIRLHRDILESAEITEVTVKKEPTGAWYASFCIDVDEQDKPPVESLSMDDCVGIDLG
VLNFIHDSNGVVVDRLDLPNDRERLEREQRALSRKEYESRNWGKQRRKVAKVHARMNEKKGDFKNKLAHYYTTHYKAVFLEDLNVRGMVEGQQNARNKAE
SGWRDLITIFQHHGKKNGCYVVTVNPENTTLDCASCGTSVYKPLWVREHSCPTCGFETDRDWNAALNVLSRGLKKLGVVHSEETPVETATAVSTDGGEYS
SIVVDASRVTEAGSPVLKEATRSVAE

 

Blast result :
Comments
ISHsr1 is 82% (TnpB) aa similar to ISHal2.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Kim,K.K., Lee,K.C. and Lee,J.S.(2012)J. Bacteriol. 194 (23), 6659.