ISFw3

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Francisella sp.
Francisella sp. W12-1067
DNA section
IS Length : 1179 bp

Ends


IR Length : 21/26

IRL : TGTAATAGCTTTGACTTAATCTGACATTGTGTATAAAATAAGATGTCAAA
IRR : TGTAGTAGCTCAAACTTGATCTGACAGTCACCAATTAATTTGAGACTGAA

Insertion site


Left flankDirect repeatRight flankDR Length
CAAATTTTGTTAGAATATGTATAGTAA7
CAAAATCTATGTTAGAGTTGCCTTTT6

DNA sequence

TGTAATAGCTTTGACTTAATCTGACATTGTGTATAAAATAAGATGTCAAATTAAGGAAGAATAAAATGAATGCATCTCAAAAGATAATCAAACCCAAATT
AGGTCTGTTAGAATTAGCAAAACAATTAGGTAATGTCAAGCAAGCTTGTAAAGTGATGGGTTACTCAAGAGACAGCTACTATCGCTTTAAAGAGTTATAC
GATAATGGTGGAGAATTAGCTTTACAAGAAATATCCCGTAAGAAGCCATTAGAGAAAAATAGAGTTGAGGCACATATTGAGCAAGCAGTAGTTAATATGG
CTTATGAATATCCGGCGTATGGACAACATAGAGTATCAAATGAATTAGCAAAGCAAGGAATATTAGTCTCAGGAAGTGGAGTTAGATCTATTTGGCTTAG
ACATGACTTAGAGAATTTTAAGAAGCGATTAACAGCACTAGAGACCAAAGTAGCTCAAGATGGCTTTATACTTACAGAAGCTCAATTACAAGCTTTAGAA
AAAGAAAAAGCTAAAAAGGTTGCTACTGGTGAGATTGAAACGCATCATCCAGGTTACTTAGGATCTCAAGATAGCTATGTAGGGTATATAAAAGGTATAG
GTAAGATATATCAACAGACATTTGTAGATACGTATACTAGAGTAGGATTTGCTAAGTTATATACAGAAAAAAATGCAATAGTAGCTGCTGATATGCTTAA
TGATAAGGTATTACCATTCTTTGAGGAACATGGAATAGATCTATTAAGAGTATTAACAGATAGAGGCACGGAATATTGTGGAAAGCTGGAGAATCATTCC
TACCAGATGTACTTAAGCATAGAAGACATTGACCATACTAAAACAAAAGCTAACTCCCCTCAAACTAATGGTATCTGTGAAAGATTTCATAAAACTATGA
AAAATGAATGTTATGAGACAATGTTTAGAAAAAAGGTTTATTCAACGATTGAGGAGATTCAGCAAGATGTTGATATATGGCTGGATTATTACAATAACGA
TAGACCACATTCTGGTAAGCACTGTTATGGAAAAACGCCTATGAAAACTTTTATTGACTCAAAACCTTTGGCAAAAGAGAAAAATTTAGGTAATATGTTT
GATAAATCTGACACTAGTTTAGAAATAAATTCAGTCTCAAATTAATTGGTGACTGTCAGATCAAGTTTGAGCTACTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1080 bp359 aa661145+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNASQKIIKPKLGLLELAKQLGNVKQACKVMGYSRDSYYRFKELYDNGGELALQEISRKKPLEKNRVEAHIEQAVVNMAYEYPAYGQHRVSNELAKQGIL
VSGSGVRSIWLRHDLENFKKRLTALETKVAQDGFILTEAQLQALEKEKAKKVATGEIETHHPGYLGSQDSYVGYIKGIGKIYQQTFVDTYTRVGFAKLYT
EKNAIVAADMLNDKVLPFFEEHGIDLLRVLTDRGTEYCGKLENHSYQMYLSIEDIDHTKTKANSPQTNGICERFHKTMKNECYETMFRKKVYSTIEEIQQ
DVDIWLDYYNNDRPHSGKHCYGKTPMKTFIDSKPLAKEKNLGNMFDKSDTSLEINSVSN

 

Blast result :
Comments
ISFw3 is 83% aa similar to ISCaa12.
References
1] Heuner K. (2014) Direct submission

2] Rydzewski K, Schulz T, Brzuszkiewicz E, Holland G, Luck C, Fleischer J, Grunow R, Heuner K. (2014) BMC Microbiol. Jun 25;14(1):169.