ISHpr1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOLG01000053 ND Haloferax prahovense
Haloferax prahovense DSM 18310
DNA section
IS Length : 1561 bp

Ends


Left end : CTGGAAATAGGCGCTAAGTCCCCTTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGCCGCACGATTCTCA II struct. : Yes
Right end : GGATACTTTGGTGTCTGCAAAGCGCGTCGTTGAAACAGGAAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGTAATCGAGGTTTAAACCTCCTACTGGtcac

DNA sequence

CTGGAAATAGGCGCTAAGTCCCCTTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGCCGCACGATTCTCA
AACACGTTCACTGCCCGGTCCACAGGCCCACCGCTACCTTTATGTCTATCCATAGTCTATACATCGGTGATGGATAGGTTTGAAATCGAAGGCGAAGAAG
TCCTCGACGGGACGGCAAAACCGTCGGGGAATAGTGCCCACGTCATCGTCCCCAAACGATGGCGCGGAGCCGACGTGAAAGTCGTCCGCGTCTCCGAACC
CGATTCAGACGAATAGATGCAGTACAACTACAAGTATCGACTTGACCCGTCGAAAGCCCTCACAGAGACGCTTCTGCACCACGTCGATACTTGTAGGCAA
CTCTACAACCACGTCCTCCACCTGCTCAACAAGACAGACGACAATCCCGCTCGCTACGAGATTCAGGGACGACTCCCCGACCTCAAAACGTGGTGGAGCG
ACCTCGGAGATGTTCACTCGAAAGTTCTCCAGATGGTCGTCAAGCGCATCTACGACAACCTCTCCACGCTTAAAGCGCAGAAGGAGAACGGACGTGCTGT
GGGGATGCTCAAGTGGAAACCCCCTCGGGAGTATCGCTCGCTCACCTACAACCAGTCCGGCTTCAAGCTCAAGAATACGAGTGGTCGGCCCGTGTTGTGG
TTGAGCAAAATCGGTGAGATTCCGATTCCCCTCCACCGAGACATTCCCGAGAACGCGACCATCAAACAGGTCACGGTCAAACAAGAACCCACGGGCGAGT
GGTTCGCCACGTTCGGTATTGACGTGGATGAAGCCACGCCCGAGAAACCGGAGACACCCGAGCGAGTCGTTGGAATCGACGTGGGGATTCTCAAGTACGC
CCACGATACTGACGGGTACGCCATCGAGAGTCCCGACTTCAGCGACGAGCGCGAACGGTTGGAACGCGCTCAACGCAACCTCTCACGGAAGGAACACGGG
TCTGCGAATTGGGAGAAACAACGCCGAGTGGTGGCCGAACGCCACGCCGACCTGAAGCGGAAGCGACGAGACTTCCTTCACAAGTTGTCGAACTATTACG
CCACCGAGTACGACTTGGTGGCCGTCGAGGACTTGGACGCAAAGGGCTTGGTCGAACTGCCGGGCAACTCACGGAATCGAGCAGGTTCGGCATGGGGAAC
GTTTCTACGGATGCTCGAATACAAATGCGACCGAGAGAGAACGCACTTCATCGCGGTTGACCCGAAAGACACGACGAAAGAGTGCGCCGCCTGTGGAGTC
AAGACGGACAAGCCGCTGTGGGTCCGTGAACACTCCTGTCCTGCCTGCGGGTTTGAGGTGGACAGGGACGCGAACGCGGCGTGGAATATTCTTTCTCGCG
GTCTCGAAGATGTAGGAGTGGGATACTCCGAATCAACGCCTGTGGAGACTGCGCTTCCTGTGGATACTTTGGTGTCTGCAAAGCGCGTCGTTGAAACAGG
AAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
147 bp48 aa170316+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MDRFEIEGEEVLDGTAKPSGNSAHVIVPKRWRGADVKVVRVSEPDSDE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1230 bp409 aa3171546+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MQYNYKYRLDPSKALTETLLHHVDTCRQLYNHVLHLLNKTDDNPARYEIQGRLPDLKTWWSDLGDVHSKVLQMVVKRIYDNLSTLKAQKENGRAVGMLKW
KPPREYRSLTYNQSGFKLKNTSGRPVLWLSKIGEIPIPLHRDIPENATIKQVTVKQEPTGEWFATFGIDVDEATPEKPETPERVVGIDVGILKYAHDTDG
YAIESPDFSDERERLERAQRNLSRKEHGSANWEKQRRVVAERHADLKRKRRDFLHKLSNYYATEYDLVAVEDLDAKGLVELPGNSRNRAGSAWGTFLRML
EYKCDRERTHFIAVDPKDTTKECAACGVKTDKPLWVREHSCPACGFEVDRDANAAWNILSRGLEDVGVGYSESTPVETALPVDTLVSAKRVVETGSPTLK
ERTASAVSE

 

Blast result :
Comments
ISHpr1 is 94% (TnpB) aa similar to ISNamo25. The first ORf is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.