ISHpr1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLG01000053 | ND | Haloferax prahovense | Haloferax prahovense DSM 18310 |
DNA section
IS Length : 1561 bp
Ends
Left end : CTGGAAATAGGCGCTAAGTCCCCTTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGCCGCACGATTCTCA II struct. : Yes
Right end : GGATACTTTGGTGTCTGCAAAGCGCGTCGTTGAAACAGGAAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGTAATCGAGGT | TTAA | ACCTCCTACTGG | tcac |
DNA sequence
CTGGAAATAGGCGCTAAGTCCCCTTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGCCGCACGATTCTCA
AACACGTTCACTGCCCGGTCCACAGGCCCACCGCTACCTTTATGTCTATCCATAGTCTATACATCGGTGATGGATAGGTTTGAAATCGAAGGCGAAGAAG
TCCTCGACGGGACGGCAAAACCGTCGGGGAATAGTGCCCACGTCATCGTCCCCAAACGATGGCGCGGAGCCGACGTGAAAGTCGTCCGCGTCTCCGAACC
CGATTCAGACGAATAGATGCAGTACAACTACAAGTATCGACTTGACCCGTCGAAAGCCCTCACAGAGACGCTTCTGCACCACGTCGATACTTGTAGGCAA
CTCTACAACCACGTCCTCCACCTGCTCAACAAGACAGACGACAATCCCGCTCGCTACGAGATTCAGGGACGACTCCCCGACCTCAAAACGTGGTGGAGCG
ACCTCGGAGATGTTCACTCGAAAGTTCTCCAGATGGTCGTCAAGCGCATCTACGACAACCTCTCCACGCTTAAAGCGCAGAAGGAGAACGGACGTGCTGT
GGGGATGCTCAAGTGGAAACCCCCTCGGGAGTATCGCTCGCTCACCTACAACCAGTCCGGCTTCAAGCTCAAGAATACGAGTGGTCGGCCCGTGTTGTGG
TTGAGCAAAATCGGTGAGATTCCGATTCCCCTCCACCGAGACATTCCCGAGAACGCGACCATCAAACAGGTCACGGTCAAACAAGAACCCACGGGCGAGT
GGTTCGCCACGTTCGGTATTGACGTGGATGAAGCCACGCCCGAGAAACCGGAGACACCCGAGCGAGTCGTTGGAATCGACGTGGGGATTCTCAAGTACGC
CCACGATACTGACGGGTACGCCATCGAGAGTCCCGACTTCAGCGACGAGCGCGAACGGTTGGAACGCGCTCAACGCAACCTCTCACGGAAGGAACACGGG
TCTGCGAATTGGGAGAAACAACGCCGAGTGGTGGCCGAACGCCACGCCGACCTGAAGCGGAAGCGACGAGACTTCCTTCACAAGTTGTCGAACTATTACG
CCACCGAGTACGACTTGGTGGCCGTCGAGGACTTGGACGCAAAGGGCTTGGTCGAACTGCCGGGCAACTCACGGAATCGAGCAGGTTCGGCATGGGGAAC
GTTTCTACGGATGCTCGAATACAAATGCGACCGAGAGAGAACGCACTTCATCGCGGTTGACCCGAAAGACACGACGAAAGAGTGCGCCGCCTGTGGAGTC
AAGACGGACAAGCCGCTGTGGGTCCGTGAACACTCCTGTCCTGCCTGCGGGTTTGAGGTGGACAGGGACGCGAACGCGGCGTGGAATATTCTTTCTCGCG
GTCTCGAAGATGTAGGAGTGGGATACTCCGAATCAACGCCTGTGGAGACTGCGCTTCCTGTGGATACTTTGGTGTCTGCAAAGCGCGTCGTTGAAACAGG
AAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC
AACACGTTCACTGCCCGGTCCACAGGCCCACCGCTACCTTTATGTCTATCCATAGTCTATACATCGGTGATGGATAGGTTTGAAATCGAAGGCGAAGAAG
TCCTCGACGGGACGGCAAAACCGTCGGGGAATAGTGCCCACGTCATCGTCCCCAAACGATGGCGCGGAGCCGACGTGAAAGTCGTCCGCGTCTCCGAACC
CGATTCAGACGAATAGATGCAGTACAACTACAAGTATCGACTTGACCCGTCGAAAGCCCTCACAGAGACGCTTCTGCACCACGTCGATACTTGTAGGCAA
CTCTACAACCACGTCCTCCACCTGCTCAACAAGACAGACGACAATCCCGCTCGCTACGAGATTCAGGGACGACTCCCCGACCTCAAAACGTGGTGGAGCG
ACCTCGGAGATGTTCACTCGAAAGTTCTCCAGATGGTCGTCAAGCGCATCTACGACAACCTCTCCACGCTTAAAGCGCAGAAGGAGAACGGACGTGCTGT
GGGGATGCTCAAGTGGAAACCCCCTCGGGAGTATCGCTCGCTCACCTACAACCAGTCCGGCTTCAAGCTCAAGAATACGAGTGGTCGGCCCGTGTTGTGG
TTGAGCAAAATCGGTGAGATTCCGATTCCCCTCCACCGAGACATTCCCGAGAACGCGACCATCAAACAGGTCACGGTCAAACAAGAACCCACGGGCGAGT
GGTTCGCCACGTTCGGTATTGACGTGGATGAAGCCACGCCCGAGAAACCGGAGACACCCGAGCGAGTCGTTGGAATCGACGTGGGGATTCTCAAGTACGC
CCACGATACTGACGGGTACGCCATCGAGAGTCCCGACTTCAGCGACGAGCGCGAACGGTTGGAACGCGCTCAACGCAACCTCTCACGGAAGGAACACGGG
TCTGCGAATTGGGAGAAACAACGCCGAGTGGTGGCCGAACGCCACGCCGACCTGAAGCGGAAGCGACGAGACTTCCTTCACAAGTTGTCGAACTATTACG
CCACCGAGTACGACTTGGTGGCCGTCGAGGACTTGGACGCAAAGGGCTTGGTCGAACTGCCGGGCAACTCACGGAATCGAGCAGGTTCGGCATGGGGAAC
GTTTCTACGGATGCTCGAATACAAATGCGACCGAGAGAGAACGCACTTCATCGCGGTTGACCCGAAAGACACGACGAAAGAGTGCGCCGCCTGTGGAGTC
AAGACGGACAAGCCGCTGTGGGTCCGTGAACACTCCTGTCCTGCCTGCGGGTTTGAGGTGGACAGGGACGCGAACGCGGCGTGGAATATTCTTTCTCGCG
GTCTCGAAGATGTAGGAGTGGGATACTCCGAATCAACGCCTGTGGAGACTGCGCTTCCTGTGGATACTTTGGTGTCTGCAAAGCGCGTCGTTGAAACAGG
AAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
147 bp | 48 aa | 170 | 316 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MDRFEIEGEEVLDGTAKPSGNSAHVIVPKRWRGADVKVVRVSEPDSDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 317 | 1546 | + | No |
AG : TnpB
ORF sequence :
MQYNYKYRLDPSKALTETLLHHVDTCRQLYNHVLHLLNKTDDNPARYEIQGRLPDLKTWWSDLGDVHSKVLQMVVKRIYDNLSTLKAQKENGRAVGMLKW
KPPREYRSLTYNQSGFKLKNTSGRPVLWLSKIGEIPIPLHRDIPENATIKQVTVKQEPTGEWFATFGIDVDEATPEKPETPERVVGIDVGILKYAHDTDG
YAIESPDFSDERERLERAQRNLSRKEHGSANWEKQRRVVAERHADLKRKRRDFLHKLSNYYATEYDLVAVEDLDAKGLVELPGNSRNRAGSAWGTFLRML
EYKCDRERTHFIAVDPKDTTKECAACGVKTDKPLWVREHSCPACGFEVDRDANAAWNILSRGLEDVGVGYSESTPVETALPVDTLVSAKRVVETGSPTLK
ERTASAVSE
KPPREYRSLTYNQSGFKLKNTSGRPVLWLSKIGEIPIPLHRDIPENATIKQVTVKQEPTGEWFATFGIDVDEATPEKPETPERVVGIDVGILKYAHDTDG
YAIESPDFSDERERLERAQRNLSRKEHGSANWEKQRRVVAERHADLKRKRRDFLHKLSNYYATEYDLVAVEDLDAKGLVELPGNSRNRAGSAWGTFLRML
EYKCDRERTHFIAVDPKDTTKECAACGVKTDKPLWVREHSCPACGFEVDRDANAAWNILSRGLEDVGVGYSESTPVETALPVDTLVSAKRVVETGSPTLK
ERTASAVSE
Blast result :
Comments
ISHpr1 is 94% (TnpB) aa similar to ISNamo25. The first ORf is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.