ISHez2

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halorubrum ezzemoulense
Halorubrum ezzemoulense
DNA section
IS Length : 1621 bp

Ends


Left end : CTGGATTTAGGCGCTAATTCCCCTTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGTCCCCAGAAATCGG II struct. : Yes
Right end : GGACACCGTTGTGTCTGTAAAGCGCGTCATGGAAACAGGAAGCCCTACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGTGAGTAGGGTAGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTGAAGCTCCAATTACCATTCGAAAGGGtcac

DNA sequence

CTGGATTTAGGCGCTAATTCCCCTTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGTCCCCAGAAATCGG
AGATTTCTGGTGTGCGAACGAGACGCTGGGCGTCTCGTCAACGCCGCACAGTTCTCATACATCCCCGACACTCGGCCCACAGGCCCACCGCTACTCTTAT
GTTTATCCAAAGTCTATACATTAGCGATGGATAGATTTGAAATTGAAGGCGAAGAAGTCCTCGACGGAACCGCAAAACCGTCAGGAAATAGCGCCCACGT
CATTGTGCCCAAACGCTGGCGCGGGGCCGACGTGAAAGTCGTCCGCGTCTCCAACCCTGACCCAGACGAATAGGCCATGCAATACAACTACAAGTATCGA
CTCGACCCGCCGGAAGCCGTTGCCGAGACGCTTCTGTACCACGTTGATACTTGTAGGCAACTCTACAACCACGTCCTCTACCTGCTCAACGAGGCAGACG
ACATCCCCACCCGATACAAGATACAAGGACAGCTCCCCGCCCTCAAAGAGTGGTGGGACGACCTCGGGGACGTTCACTCGAAAGTTCTCCAGATGGTCGT
CAAGCGCGTCTACGACAACCTCTCCATGCTCAAAGCGCAGAAGGAGAACGGACGCGCCGTGGGGATGCTCAAGTGGAAATCTCCTCGGGAGTATCAGTCG
CTCACCTACAACCAGTCCGGCTTCAAACTCAAGAATACGAGTGGTCGGTCTGTCCTGTGGTTGAGCAAGATCGGTGAGATTCCGATCCATCTCCACCGCG
ACATCCCCGAGAATGCGACCATCAAACAGGTCACGGTCAAACGAGAACCCACGGGCGAGTGGTACGCCACGTTCGGTATCGATGTGGGGGAAAGCACACC
TGAAAAACCAGAGACGCCCGAGAAGGTCGTTGGTATCGACGTGGGGATTCTCAAGTACGCCCACGACACCGATGGGTACGCTATTGAAAGCCCCAACTTC
AGCAACGAGCGCGAACGACTCGAACGCGGACAGCGTGACCTTTCGCAGAAGGAACACGGCTCTGCGAATTGGGAGAAACAACGGCAGATCGTAGCCGAGC
GACACGCCGATCTCAAGCGAAAGCGACGAGACTTCCTTCACAAGTTGTCGAACTACTACGCCACCGAGTACGACTTGGTGGCTGTTGAGGACTTGGATGC
GAAGGGGCTGGTCGAACTCCCCGGTAATTCACGGAACCGAGCAGGTGCGGCGTGGGGGACGTTTCTACGGATGCTCGAATACAAGTGCGAGCGTGAAGGA
ACGCACTTCGTCTCGGTTGACCCGAAAGATACGACGAAAGAGTGTGCGTCCTGTGGTGTCAAGACGGACAAACCGGTGTGGGTCCGTGAACACTCCTGTC
CGGCGTGTGGGTTTGAGGCGGACAGAGATGCGAATGCGGCGTGGAACGTCCTTTCTCGCGGCCTCGAAGACGTAGGAGTGGTTCACTCCGAATCAACGCC
TGTGGAGACTGCGCTCCCTGTGGACACCGTTGTGTCTGTAAAGCGCGTCATGGAAACAGGAAGCCCTACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGT
GAGTAGGGTAGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
147 bp48 aa227373+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MDRFEIEGEEVLDGTAKPSGNSAHVIVPKRWRGADVKVVRVSNPDPDE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1230 bp409 aa3771606+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MQYNYKYRLDPPEAVAETLLYHVDTCRQLYNHVLYLLNEADDIPTRYKIQGQLPALKEWWDDLGDVHSKVLQMVVKRVYDNLSMLKAQKENGRAVGMLKW
KSPREYQSLTYNQSGFKLKNTSGRSVLWLSKIGEIPIHLHRDIPENATIKQVTVKREPTGEWYATFGIDVGESTPEKPETPEKVVGIDVGILKYAHDTDG
YAIESPNFSNERERLERGQRDLSQKEHGSANWEKQRQIVAERHADLKRKRRDFLHKLSNYYATEYDLVAVEDLDAKGLVELPGNSRNRAGAAWGTFLRML
EYKCEREGTHFVSVDPKDTTKECASCGVKTDKPVWVREHSCPACGFEADRDANAAWNVLSRGLEDVGVVHSESTPVETALPVDTVVSVKRVMETGSPTLK
ERTASAVSE

 

Blast result :
Comments
ISHez2 is 95% (TnpB) aa similar to ISNamo25. The first ORf is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission