ISHez2
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halorubrum ezzemoulense | Halorubrum ezzemoulense |
DNA section
IS Length : 1621 bp
Ends
Left end : CTGGATTTAGGCGCTAATTCCCCTTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGTCCCCAGAAATCGG II struct. : Yes
Right end : GGACACCGTTGTGTCTGTAAAGCGCGTCATGGAAACAGGAAGCCCTACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGTGAGTAGGGTAGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTGAAGCTCCAA | TTAC | CATTCGAAAGGG | tcac |
DNA sequence
CTGGATTTAGGCGCTAATTCCCCTTCCTCAAGGAGCAACGCAGGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGTCCCCAGAAATCGG
AGATTTCTGGTGTGCGAACGAGACGCTGGGCGTCTCGTCAACGCCGCACAGTTCTCATACATCCCCGACACTCGGCCCACAGGCCCACCGCTACTCTTAT
GTTTATCCAAAGTCTATACATTAGCGATGGATAGATTTGAAATTGAAGGCGAAGAAGTCCTCGACGGAACCGCAAAACCGTCAGGAAATAGCGCCCACGT
CATTGTGCCCAAACGCTGGCGCGGGGCCGACGTGAAAGTCGTCCGCGTCTCCAACCCTGACCCAGACGAATAGGCCATGCAATACAACTACAAGTATCGA
CTCGACCCGCCGGAAGCCGTTGCCGAGACGCTTCTGTACCACGTTGATACTTGTAGGCAACTCTACAACCACGTCCTCTACCTGCTCAACGAGGCAGACG
ACATCCCCACCCGATACAAGATACAAGGACAGCTCCCCGCCCTCAAAGAGTGGTGGGACGACCTCGGGGACGTTCACTCGAAAGTTCTCCAGATGGTCGT
CAAGCGCGTCTACGACAACCTCTCCATGCTCAAAGCGCAGAAGGAGAACGGACGCGCCGTGGGGATGCTCAAGTGGAAATCTCCTCGGGAGTATCAGTCG
CTCACCTACAACCAGTCCGGCTTCAAACTCAAGAATACGAGTGGTCGGTCTGTCCTGTGGTTGAGCAAGATCGGTGAGATTCCGATCCATCTCCACCGCG
ACATCCCCGAGAATGCGACCATCAAACAGGTCACGGTCAAACGAGAACCCACGGGCGAGTGGTACGCCACGTTCGGTATCGATGTGGGGGAAAGCACACC
TGAAAAACCAGAGACGCCCGAGAAGGTCGTTGGTATCGACGTGGGGATTCTCAAGTACGCCCACGACACCGATGGGTACGCTATTGAAAGCCCCAACTTC
AGCAACGAGCGCGAACGACTCGAACGCGGACAGCGTGACCTTTCGCAGAAGGAACACGGCTCTGCGAATTGGGAGAAACAACGGCAGATCGTAGCCGAGC
GACACGCCGATCTCAAGCGAAAGCGACGAGACTTCCTTCACAAGTTGTCGAACTACTACGCCACCGAGTACGACTTGGTGGCTGTTGAGGACTTGGATGC
GAAGGGGCTGGTCGAACTCCCCGGTAATTCACGGAACCGAGCAGGTGCGGCGTGGGGGACGTTTCTACGGATGCTCGAATACAAGTGCGAGCGTGAAGGA
ACGCACTTCGTCTCGGTTGACCCGAAAGATACGACGAAAGAGTGTGCGTCCTGTGGTGTCAAGACGGACAAACCGGTGTGGGTCCGTGAACACTCCTGTC
CGGCGTGTGGGTTTGAGGCGGACAGAGATGCGAATGCGGCGTGGAACGTCCTTTCTCGCGGCCTCGAAGACGTAGGAGTGGTTCACTCCGAATCAACGCC
TGTGGAGACTGCGCTCCCTGTGGACACCGTTGTGTCTGTAAAGCGCGTCATGGAAACAGGAAGCCCTACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGT
GAGTAGGGTAGGGTAGTTCAC
AGATTTCTGGTGTGCGAACGAGACGCTGGGCGTCTCGTCAACGCCGCACAGTTCTCATACATCCCCGACACTCGGCCCACAGGCCCACCGCTACTCTTAT
GTTTATCCAAAGTCTATACATTAGCGATGGATAGATTTGAAATTGAAGGCGAAGAAGTCCTCGACGGAACCGCAAAACCGTCAGGAAATAGCGCCCACGT
CATTGTGCCCAAACGCTGGCGCGGGGCCGACGTGAAAGTCGTCCGCGTCTCCAACCCTGACCCAGACGAATAGGCCATGCAATACAACTACAAGTATCGA
CTCGACCCGCCGGAAGCCGTTGCCGAGACGCTTCTGTACCACGTTGATACTTGTAGGCAACTCTACAACCACGTCCTCTACCTGCTCAACGAGGCAGACG
ACATCCCCACCCGATACAAGATACAAGGACAGCTCCCCGCCCTCAAAGAGTGGTGGGACGACCTCGGGGACGTTCACTCGAAAGTTCTCCAGATGGTCGT
CAAGCGCGTCTACGACAACCTCTCCATGCTCAAAGCGCAGAAGGAGAACGGACGCGCCGTGGGGATGCTCAAGTGGAAATCTCCTCGGGAGTATCAGTCG
CTCACCTACAACCAGTCCGGCTTCAAACTCAAGAATACGAGTGGTCGGTCTGTCCTGTGGTTGAGCAAGATCGGTGAGATTCCGATCCATCTCCACCGCG
ACATCCCCGAGAATGCGACCATCAAACAGGTCACGGTCAAACGAGAACCCACGGGCGAGTGGTACGCCACGTTCGGTATCGATGTGGGGGAAAGCACACC
TGAAAAACCAGAGACGCCCGAGAAGGTCGTTGGTATCGACGTGGGGATTCTCAAGTACGCCCACGACACCGATGGGTACGCTATTGAAAGCCCCAACTTC
AGCAACGAGCGCGAACGACTCGAACGCGGACAGCGTGACCTTTCGCAGAAGGAACACGGCTCTGCGAATTGGGAGAAACAACGGCAGATCGTAGCCGAGC
GACACGCCGATCTCAAGCGAAAGCGACGAGACTTCCTTCACAAGTTGTCGAACTACTACGCCACCGAGTACGACTTGGTGGCTGTTGAGGACTTGGATGC
GAAGGGGCTGGTCGAACTCCCCGGTAATTCACGGAACCGAGCAGGTGCGGCGTGGGGGACGTTTCTACGGATGCTCGAATACAAGTGCGAGCGTGAAGGA
ACGCACTTCGTCTCGGTTGACCCGAAAGATACGACGAAAGAGTGTGCGTCCTGTGGTGTCAAGACGGACAAACCGGTGTGGGTCCGTGAACACTCCTGTC
CGGCGTGTGGGTTTGAGGCGGACAGAGATGCGAATGCGGCGTGGAACGTCCTTTCTCGCGGCCTCGAAGACGTAGGAGTGGTTCACTCCGAATCAACGCC
TGTGGAGACTGCGCTCCCTGTGGACACCGTTGTGTCTGTAAAGCGCGTCATGGAAACAGGAAGCCCTACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGT
GAGTAGGGTAGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
147 bp | 48 aa | 227 | 373 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MDRFEIEGEEVLDGTAKPSGNSAHVIVPKRWRGADVKVVRVSNPDPDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 377 | 1606 | + | No |
AG : TnpB
ORF sequence :
MQYNYKYRLDPPEAVAETLLYHVDTCRQLYNHVLYLLNEADDIPTRYKIQGQLPALKEWWDDLGDVHSKVLQMVVKRVYDNLSMLKAQKENGRAVGMLKW
KSPREYQSLTYNQSGFKLKNTSGRSVLWLSKIGEIPIHLHRDIPENATIKQVTVKREPTGEWYATFGIDVGESTPEKPETPEKVVGIDVGILKYAHDTDG
YAIESPNFSNERERLERGQRDLSQKEHGSANWEKQRQIVAERHADLKRKRRDFLHKLSNYYATEYDLVAVEDLDAKGLVELPGNSRNRAGAAWGTFLRML
EYKCEREGTHFVSVDPKDTTKECASCGVKTDKPVWVREHSCPACGFEADRDANAAWNVLSRGLEDVGVVHSESTPVETALPVDTVVSVKRVMETGSPTLK
ERTASAVSE
KSPREYQSLTYNQSGFKLKNTSGRSVLWLSKIGEIPIHLHRDIPENATIKQVTVKREPTGEWYATFGIDVGESTPEKPETPEKVVGIDVGILKYAHDTDG
YAIESPNFSNERERLERGQRDLSQKEHGSANWEKQRQIVAERHADLKRKRRDFLHKLSNYYATEYDLVAVEDLDAKGLVELPGNSRNRAGAAWGTFLRML
EYKCEREGTHFVSVDPKDTTKECASCGVKTDKPVWVREHSCPACGFEADRDANAAWNVLSRGLEDVGVVHSESTPVETALPVDTVVSVKRVMETGSPTLK
ERTASAVSE
Blast result :
Comments
ISHez2 is 95% (TnpB) aa similar to ISNamo25. The first ORf is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission