ISHez1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halorubrum ezzemoulense | Halorubrum ezzemoulense |
DNA section
IS Length : 1579 bp
Ends
Left end : CTGAATACAGGCGGTAAGCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGCCTCACATAC II struct. : Yes
Right end : GGATACATCCGTGTCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCATATCTCCAG | TTAG | TGTGACCATGAA | tcac |
DNA sequence
CTGAATACAGGCGGTAAGCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGCCTCACATAC
ACTGCTCTGTATCACTACTCCATGCCCCACGTACCGACACACTTACGTTGAAACAATGTATAAATACAGGTGATGGATAGACACGAAATCGAAGGCCACG
AAGTCATCGAAGGCGAGGTGAAAGCCACCGGAAACGGCGCACACGTTCTCGTTCCGAAACAGTGGCGTGGCGCAGACGTGAAAATCGTCCGAACGTCTGA
TCCCGACGAATAGCTACTCCCAATGTACTACGCCTATAGGTTCCGACTCAATCCCACGCCCGAACAGCGTGAGCAACTGGATTACCACCGTGACACCTGT
AGGCAACTCTACAACCACGCACTCAACAAATTTGAGCAAATCCCAGACTCGGCGGGGACACTCAACCAACGAGTGCGGCAGGTTCGGGATCAACTCACCG
ACCTCAAAGAGTGGTGGGAGGAACTGAACGATCTGTACTCGACAGTCGCACAGGCGGCTGTCATGCGAATTGAGGACAGCATCAAAGCTCTCTCCGAACT
GAAAGAGCGGGGCTACAACGTCGGTAGTCTCAACTGGAAAGCCCCACAGGACTTCCGTAGTTTCACTTACGTACAGTCTGGTTTCGAGTTCGATAGTAAG
AACGGCCAGCCTGTACTGTCACTGTCGAAACTCGCGGATATTCCAATCGTGAACCACCGAGTGATCCCCGACGACGTGACGATCAAAGAAGTCACGATCA
AGAAAGAGCCGACAGGTGAGTGGTTCGCCTCATTCGCTGTCGACGGCAAACAGACACCGGAGAAACCAACCGGCCCCGAGCGATGTGTTGGGATCGACGT
TGGGATACTCAAATACGCCCACGATACCGATGGCACTGCTGTCGGGTCACTTGACTTGTCCGACGAACGCGAACAGTTGGAACGCGCCCAGCGCGACCTC
TCACGGAAAGAACATGGGTCGAACAACTGGGAGAAACAACGGAAAGTCGTTGCCCAACGCCATGCCGATCTAAAACGGAAGCGACGTGATTTCTTGCACA
AGCTGTCGAACTACTACGCCACCGAGTACGACTTGGTGGCCGTCGAGAGCTTGGACGCGAAAGGGTTGGTTGAACTACCGGGCAACTCTCGAAACCGGGC
GTCGGCGGCGTGGGGGACGTTCAAGCGGATGCTCGAATACAAATGCGACCGTGAAGGCACGCACTTTGTAGAGGTCGATCCGAAAGACACGACCCAAGAG
TGTGCGTCCTGTGGCGTGAAAACCGAGAAACCGCTGTGGGTTCGTGAACACTCTTGTCCTTCCTGCGGGTTTGAAGCGGATCGGGACGCGAATGCGGCGT
GGAATATTCTTTCTCGTGGTCTTGAAGAAGTAGGAGTGGTTCACTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGCGGATACATCCGTGTCTGCAAA
GCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC
ACTGCTCTGTATCACTACTCCATGCCCCACGTACCGACACACTTACGTTGAAACAATGTATAAATACAGGTGATGGATAGACACGAAATCGAAGGCCACG
AAGTCATCGAAGGCGAGGTGAAAGCCACCGGAAACGGCGCACACGTTCTCGTTCCGAAACAGTGGCGTGGCGCAGACGTGAAAATCGTCCGAACGTCTGA
TCCCGACGAATAGCTACTCCCAATGTACTACGCCTATAGGTTCCGACTCAATCCCACGCCCGAACAGCGTGAGCAACTGGATTACCACCGTGACACCTGT
AGGCAACTCTACAACCACGCACTCAACAAATTTGAGCAAATCCCAGACTCGGCGGGGACACTCAACCAACGAGTGCGGCAGGTTCGGGATCAACTCACCG
ACCTCAAAGAGTGGTGGGAGGAACTGAACGATCTGTACTCGACAGTCGCACAGGCGGCTGTCATGCGAATTGAGGACAGCATCAAAGCTCTCTCCGAACT
GAAAGAGCGGGGCTACAACGTCGGTAGTCTCAACTGGAAAGCCCCACAGGACTTCCGTAGTTTCACTTACGTACAGTCTGGTTTCGAGTTCGATAGTAAG
AACGGCCAGCCTGTACTGTCACTGTCGAAACTCGCGGATATTCCAATCGTGAACCACCGAGTGATCCCCGACGACGTGACGATCAAAGAAGTCACGATCA
AGAAAGAGCCGACAGGTGAGTGGTTCGCCTCATTCGCTGTCGACGGCAAACAGACACCGGAGAAACCAACCGGCCCCGAGCGATGTGTTGGGATCGACGT
TGGGATACTCAAATACGCCCACGATACCGATGGCACTGCTGTCGGGTCACTTGACTTGTCCGACGAACGCGAACAGTTGGAACGCGCCCAGCGCGACCTC
TCACGGAAAGAACATGGGTCGAACAACTGGGAGAAACAACGGAAAGTCGTTGCCCAACGCCATGCCGATCTAAAACGGAAGCGACGTGATTTCTTGCACA
AGCTGTCGAACTACTACGCCACCGAGTACGACTTGGTGGCCGTCGAGAGCTTGGACGCGAAAGGGTTGGTTGAACTACCGGGCAACTCTCGAAACCGGGC
GTCGGCGGCGTGGGGGACGTTCAAGCGGATGCTCGAATACAAATGCGACCGTGAAGGCACGCACTTTGTAGAGGTCGATCCGAAAGACACGACCCAAGAG
TGTGCGTCCTGTGGCGTGAAAACCGAGAAACCGCTGTGGGTTCGTGAACACTCTTGTCCTTCCTGCGGGTTTGAAGCGGATCGGGACGCGAATGCGGCGT
GGAATATTCTTTCTCGTGGTCTTGAAGAAGTAGGAGTGGTTCACTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGCGGATACATCCGTGTCTGCAAA
GCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
141 bp | 46 aa | 173 | 313 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MDRHEIEGHEVIEGEVKATGNGAHVLVPKQWRGADVKIVRTSDPDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 323 | 1564 | + | No |
AG : TnpB
ORF sequence :
MYYAYRFRLNPTPEQREQLDYHRDTCRQLYNHALNKFEQIPDSAGTLNQRVRQVRDQLTDLKEWWEELNDLYSTVAQAAVMRIEDSIKALSELKERGYNV
GSLNWKAPQDFRSFTYVQSGFEFDSKNGQPVLSLSKLADIPIVNHRVIPDDVTIKEVTIKKEPTGEWFASFAVDGKQTPEKPTGPERCVGIDVGILKYAH
DTDGTAVGSLDLSDEREQLERAQRDLSRKEHGSNNWEKQRKVVAQRHADLKRKRRDFLHKLSNYYATEYDLVAVESLDAKGLVELPGNSRNRASAAWGTF
KRMLEYKCDREGTHFVEVDPKDTTQECASCGVKTEKPLWVREHSCPSCGFEADRDANAAWNILSRGLEEVGVVHSESTPVETALPADTSVSAKRVVEAGS
PTLKERTASAVSE
GSLNWKAPQDFRSFTYVQSGFEFDSKNGQPVLSLSKLADIPIVNHRVIPDDVTIKEVTIKKEPTGEWFASFAVDGKQTPEKPTGPERCVGIDVGILKYAH
DTDGTAVGSLDLSDEREQLERAQRDLSRKEHGSNNWEKQRKVVAQRHADLKRKRRDFLHKLSNYYATEYDLVAVESLDAKGLVELPGNSRNRASAAWGTF
KRMLEYKCDREGTHFVEVDPKDTTQECASCGVKTEKPLWVREHSCPSCGFEADRDANAAWNILSRGLEEVGVVHSESTPVETALPADTSVSAKRVVEAGS
PTLKERTASAVSE
Blast result :
Comments
ISHez1 is 94% (TnpB) aa similar to ISHli13. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission.