ISHez1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halorubrum ezzemoulense
Halorubrum ezzemoulense
DNA section
IS Length : 1579 bp

Ends


Left end : CTGAATACAGGCGGTAAGCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGCCTCACATAC II struct. : Yes
Right end : GGATACATCCGTGTCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCATATCTCCAGTTAGTGTGACCATGAAtcac

DNA sequence

CTGAATACAGGCGGTAAGCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCCGAGTAGCGCAGTAGGGAGGGGATACACCGCCGTCATCGCCTCACATAC
ACTGCTCTGTATCACTACTCCATGCCCCACGTACCGACACACTTACGTTGAAACAATGTATAAATACAGGTGATGGATAGACACGAAATCGAAGGCCACG
AAGTCATCGAAGGCGAGGTGAAAGCCACCGGAAACGGCGCACACGTTCTCGTTCCGAAACAGTGGCGTGGCGCAGACGTGAAAATCGTCCGAACGTCTGA
TCCCGACGAATAGCTACTCCCAATGTACTACGCCTATAGGTTCCGACTCAATCCCACGCCCGAACAGCGTGAGCAACTGGATTACCACCGTGACACCTGT
AGGCAACTCTACAACCACGCACTCAACAAATTTGAGCAAATCCCAGACTCGGCGGGGACACTCAACCAACGAGTGCGGCAGGTTCGGGATCAACTCACCG
ACCTCAAAGAGTGGTGGGAGGAACTGAACGATCTGTACTCGACAGTCGCACAGGCGGCTGTCATGCGAATTGAGGACAGCATCAAAGCTCTCTCCGAACT
GAAAGAGCGGGGCTACAACGTCGGTAGTCTCAACTGGAAAGCCCCACAGGACTTCCGTAGTTTCACTTACGTACAGTCTGGTTTCGAGTTCGATAGTAAG
AACGGCCAGCCTGTACTGTCACTGTCGAAACTCGCGGATATTCCAATCGTGAACCACCGAGTGATCCCCGACGACGTGACGATCAAAGAAGTCACGATCA
AGAAAGAGCCGACAGGTGAGTGGTTCGCCTCATTCGCTGTCGACGGCAAACAGACACCGGAGAAACCAACCGGCCCCGAGCGATGTGTTGGGATCGACGT
TGGGATACTCAAATACGCCCACGATACCGATGGCACTGCTGTCGGGTCACTTGACTTGTCCGACGAACGCGAACAGTTGGAACGCGCCCAGCGCGACCTC
TCACGGAAAGAACATGGGTCGAACAACTGGGAGAAACAACGGAAAGTCGTTGCCCAACGCCATGCCGATCTAAAACGGAAGCGACGTGATTTCTTGCACA
AGCTGTCGAACTACTACGCCACCGAGTACGACTTGGTGGCCGTCGAGAGCTTGGACGCGAAAGGGTTGGTTGAACTACCGGGCAACTCTCGAAACCGGGC
GTCGGCGGCGTGGGGGACGTTCAAGCGGATGCTCGAATACAAATGCGACCGTGAAGGCACGCACTTTGTAGAGGTCGATCCGAAAGACACGACCCAAGAG
TGTGCGTCCTGTGGCGTGAAAACCGAGAAACCGCTGTGGGTTCGTGAACACTCTTGTCCTTCCTGCGGGTTTGAAGCGGATCGGGACGCGAATGCGGCGT
GGAATATTCTTTCTCGTGGTCTTGAAGAAGTAGGAGTGGTTCACTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGCGGATACATCCGTGTCTGCAAA
GCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
141 bp46 aa173313+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MDRHEIEGHEVIEGEVKATGNGAHVLVPKQWRGADVKIVRTSDPDE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1242 bp413 aa3231564+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MYYAYRFRLNPTPEQREQLDYHRDTCRQLYNHALNKFEQIPDSAGTLNQRVRQVRDQLTDLKEWWEELNDLYSTVAQAAVMRIEDSIKALSELKERGYNV
GSLNWKAPQDFRSFTYVQSGFEFDSKNGQPVLSLSKLADIPIVNHRVIPDDVTIKEVTIKKEPTGEWFASFAVDGKQTPEKPTGPERCVGIDVGILKYAH
DTDGTAVGSLDLSDEREQLERAQRDLSRKEHGSNNWEKQRKVVAQRHADLKRKRRDFLHKLSNYYATEYDLVAVESLDAKGLVELPGNSRNRASAAWGTF
KRMLEYKCDREGTHFVEVDPKDTTQECASCGVKTEKPLWVREHSCPSCGFEADRDANAAWNILSRGLEEVGVVHSESTPVETALPADTSVSAKRVVEAGS
PTLKERTASAVSE

 

Blast result :
Comments
ISHez1 is 94% (TnpB) aa similar to ISHli13. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission.