ISHade1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOLP01000001 ND Haloferax denitrificans
Haloferax denitrificans ATCC 35960
DNA section
IS Length : 1528 bp

Ends


Left end : CTGAATTGAGGCGCTAAGGCCCCTTCCTCAACGAGCGAGTAGGGAGGGGATACAGCGCCGCACGAGTAGCAAACACGTTCGACGCTCGGCCCACAGGCCC II struct. : Yes
Right end : CCCTGTGGATACACCTGTGTCTGCAAAGCGCGTCGTTGAAACAGGAAGCCCCCACCTCAAGCGCGAGCCGTCAGGCGAGCGGTAGGGTGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTGAGAACGCTTTTACTAATTAGACCCCtcac

DNA sequence

CTGAATTGAGGCGCTAAGGCCCCTTCCTCAACGAGCGAGTAGGGAGGGGATACAGCGCCGCACGAGTAGCAAACACGTTCGACGCTCGGCCCACAGGCCC
ACCGCCATCTTTATGTTGAAACTATGTATAAACATAGGTGATGGATAGACATGAAATCGAAGGCCACGAAGTCATCGACGGGACGGTCAAAGCCACCGGC
AACGGCGCTCACGTCCTCGTCCCGAAACGATGGCGTGGCGCAGACGTGAAAATCGTCCGAACCACCGAACCTGACGAGTAGCACACCCGATGAACTACAA
CTACAGGTATCGACTCCGACCGTCCGACGCCCACCTCGAACAGTTAACGTGGACTGTCGATACCTGTAGACAGGTCTACAACCACTTCCTCCACCGACTC
AACCGCACCGACGACACCTCGGCATACAGCGAGCAGAAACTCTTGCCGAGTCTCAAGAAATGGTGGGACGACCTGAAAGACGTTCACTCGAAGGTACTTC
AGAAAGTCGTTCAGCGGTTGTACGATAACCTATCGACGCTTCGCGGACGCAAAGAGAACGGCTACCGCGTGGGGACGCTCAAGTGGAAAGCACCGGGAGA
GTACCGCAGTTTCACCTACAGTCAATCCGGCTTCAAGCTCAAAAACACGAGCGGTCGGACTCGACTGTGGCTCTCGAAAATCGGTGAAATCCCGCTCACG
TTCCACCGCGACCTGCCCAACGACGTCGAAATCAAGACCGTCACGGTCAAACAGGAACCGACCGGCAAGTGGTACGCCGTCCTCGGCGTCGAAACCCCGG
ACGACCCATCGGAGAAGCCTGAGAATCCCGAGAGGTGCGTCGGTATCGACGTGGGGATTCTCAAGTACGCCCACGACACGGACGGAAACGCTGTTGAATC
TCTCGACCTCTCCGACGAGCGCGAACGCTTGGAGCGCGCACAGCGCGACCTCTCGCGGAAAGAACACGGGTCTGCGAATTGGCAAAAACAGCGAAAGGTC
GTGGCCGAACGCCACGCCGAGTTGAAGAACAAGCGCCGCGACTTCTTGCACAAACTCTCGAACTACTACGCTCGGGAGTATGACCTCGTGACCGTCGAGG
ACTTGGACGCGAAGGGGTTAGTCGAACTTCCGGGCAACTCTCGAAACCGGGCAGGTGCGGCGTGGGGGACGTTCTTGCGGATGCTCGAATACAAGTGCGA
ACGTGAAGGGACTCACTTCGTGGCAGTAGACCCGGCAGGGACGACCAAAGAGTGTGCGTCCTGCGGTGTCTCGACGGACAAACCGTTGTGGGTGCGGGAA
CACTCCTGCCCGGCGTGTGGGTTTAAAGCGGATAGAGACGCGAACGCGGCGTGGAACATTCTTTCTCGCGGTATCAAGAAGCGGTTAGGAGCGGGACACT
CCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACCTGTGTCTGCAAAGCGCGTCGTTGAAACAGGAAGCCCCCACCTCAAGCGCGAGCCGTC
AGGCGAGCGGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
141 bp46 aa141281+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MDRHEIEGHEVIDGTVKATGNGAHVLVPKRWRGADVKIVRTTEPDE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1224 bp407 aa2901513+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MNYNYRYRLRPSDAHLEQLTWTVDTCRQVYNHFLHRLNRTDDTSAYSEQKLLPSLKKWWDDLKDVHSKVLQKVVQRLYDNLSTLRGRKENGYRVGTLKWK
APGEYRSFTYSQSGFKLKNTSGRTRLWLSKIGEIPLTFHRDLPNDVEIKTVTVKQEPTGKWYAVLGVETPDDPSEKPENPERCVGIDVGILKYAHDTDGN
AVESLDLSDERERLERAQRDLSRKEHGSANWQKQRKVVAERHAELKNKRRDFLHKLSNYYAREYDLVTVEDLDAKGLVELPGNSRNRAGAAWGTFLRMLE
YKCEREGTHFVAVDPAGTTKECASCGVSTDKPLWVREHSCPACGFKADRDANAAWNILSRGIKKRLGAGHSESTPVETALPVDTPVSAKRVVETGSPHLK
REPSGER

 

Blast result :
Comments
ISHade1 is 93% (TnpB) aa similar to ISHla22. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.