ISHade1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLP01000001 | ND | Haloferax denitrificans | Haloferax denitrificans ATCC 35960 |
DNA section
IS Length : 1528 bp
Ends
Left end : CTGAATTGAGGCGCTAAGGCCCCTTCCTCAACGAGCGAGTAGGGAGGGGATACAGCGCCGCACGAGTAGCAAACACGTTCGACGCTCGGCCCACAGGCCC II struct. : Yes
Right end : CCCTGTGGATACACCTGTGTCTGCAAAGCGCGTCGTTGAAACAGGAAGCCCCCACCTCAAGCGCGAGCCGTCAGGCGAGCGGTAGGGTGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTGAGAACGCTT | TTAC | TAATTAGACCCC | tcac |
DNA sequence
CTGAATTGAGGCGCTAAGGCCCCTTCCTCAACGAGCGAGTAGGGAGGGGATACAGCGCCGCACGAGTAGCAAACACGTTCGACGCTCGGCCCACAGGCCC
ACCGCCATCTTTATGTTGAAACTATGTATAAACATAGGTGATGGATAGACATGAAATCGAAGGCCACGAAGTCATCGACGGGACGGTCAAAGCCACCGGC
AACGGCGCTCACGTCCTCGTCCCGAAACGATGGCGTGGCGCAGACGTGAAAATCGTCCGAACCACCGAACCTGACGAGTAGCACACCCGATGAACTACAA
CTACAGGTATCGACTCCGACCGTCCGACGCCCACCTCGAACAGTTAACGTGGACTGTCGATACCTGTAGACAGGTCTACAACCACTTCCTCCACCGACTC
AACCGCACCGACGACACCTCGGCATACAGCGAGCAGAAACTCTTGCCGAGTCTCAAGAAATGGTGGGACGACCTGAAAGACGTTCACTCGAAGGTACTTC
AGAAAGTCGTTCAGCGGTTGTACGATAACCTATCGACGCTTCGCGGACGCAAAGAGAACGGCTACCGCGTGGGGACGCTCAAGTGGAAAGCACCGGGAGA
GTACCGCAGTTTCACCTACAGTCAATCCGGCTTCAAGCTCAAAAACACGAGCGGTCGGACTCGACTGTGGCTCTCGAAAATCGGTGAAATCCCGCTCACG
TTCCACCGCGACCTGCCCAACGACGTCGAAATCAAGACCGTCACGGTCAAACAGGAACCGACCGGCAAGTGGTACGCCGTCCTCGGCGTCGAAACCCCGG
ACGACCCATCGGAGAAGCCTGAGAATCCCGAGAGGTGCGTCGGTATCGACGTGGGGATTCTCAAGTACGCCCACGACACGGACGGAAACGCTGTTGAATC
TCTCGACCTCTCCGACGAGCGCGAACGCTTGGAGCGCGCACAGCGCGACCTCTCGCGGAAAGAACACGGGTCTGCGAATTGGCAAAAACAGCGAAAGGTC
GTGGCCGAACGCCACGCCGAGTTGAAGAACAAGCGCCGCGACTTCTTGCACAAACTCTCGAACTACTACGCTCGGGAGTATGACCTCGTGACCGTCGAGG
ACTTGGACGCGAAGGGGTTAGTCGAACTTCCGGGCAACTCTCGAAACCGGGCAGGTGCGGCGTGGGGGACGTTCTTGCGGATGCTCGAATACAAGTGCGA
ACGTGAAGGGACTCACTTCGTGGCAGTAGACCCGGCAGGGACGACCAAAGAGTGTGCGTCCTGCGGTGTCTCGACGGACAAACCGTTGTGGGTGCGGGAA
CACTCCTGCCCGGCGTGTGGGTTTAAAGCGGATAGAGACGCGAACGCGGCGTGGAACATTCTTTCTCGCGGTATCAAGAAGCGGTTAGGAGCGGGACACT
CCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACCTGTGTCTGCAAAGCGCGTCGTTGAAACAGGAAGCCCCCACCTCAAGCGCGAGCCGTC
AGGCGAGCGGTAGGGTGGGGTAGTTCAC
ACCGCCATCTTTATGTTGAAACTATGTATAAACATAGGTGATGGATAGACATGAAATCGAAGGCCACGAAGTCATCGACGGGACGGTCAAAGCCACCGGC
AACGGCGCTCACGTCCTCGTCCCGAAACGATGGCGTGGCGCAGACGTGAAAATCGTCCGAACCACCGAACCTGACGAGTAGCACACCCGATGAACTACAA
CTACAGGTATCGACTCCGACCGTCCGACGCCCACCTCGAACAGTTAACGTGGACTGTCGATACCTGTAGACAGGTCTACAACCACTTCCTCCACCGACTC
AACCGCACCGACGACACCTCGGCATACAGCGAGCAGAAACTCTTGCCGAGTCTCAAGAAATGGTGGGACGACCTGAAAGACGTTCACTCGAAGGTACTTC
AGAAAGTCGTTCAGCGGTTGTACGATAACCTATCGACGCTTCGCGGACGCAAAGAGAACGGCTACCGCGTGGGGACGCTCAAGTGGAAAGCACCGGGAGA
GTACCGCAGTTTCACCTACAGTCAATCCGGCTTCAAGCTCAAAAACACGAGCGGTCGGACTCGACTGTGGCTCTCGAAAATCGGTGAAATCCCGCTCACG
TTCCACCGCGACCTGCCCAACGACGTCGAAATCAAGACCGTCACGGTCAAACAGGAACCGACCGGCAAGTGGTACGCCGTCCTCGGCGTCGAAACCCCGG
ACGACCCATCGGAGAAGCCTGAGAATCCCGAGAGGTGCGTCGGTATCGACGTGGGGATTCTCAAGTACGCCCACGACACGGACGGAAACGCTGTTGAATC
TCTCGACCTCTCCGACGAGCGCGAACGCTTGGAGCGCGCACAGCGCGACCTCTCGCGGAAAGAACACGGGTCTGCGAATTGGCAAAAACAGCGAAAGGTC
GTGGCCGAACGCCACGCCGAGTTGAAGAACAAGCGCCGCGACTTCTTGCACAAACTCTCGAACTACTACGCTCGGGAGTATGACCTCGTGACCGTCGAGG
ACTTGGACGCGAAGGGGTTAGTCGAACTTCCGGGCAACTCTCGAAACCGGGCAGGTGCGGCGTGGGGGACGTTCTTGCGGATGCTCGAATACAAGTGCGA
ACGTGAAGGGACTCACTTCGTGGCAGTAGACCCGGCAGGGACGACCAAAGAGTGTGCGTCCTGCGGTGTCTCGACGGACAAACCGTTGTGGGTGCGGGAA
CACTCCTGCCCGGCGTGTGGGTTTAAAGCGGATAGAGACGCGAACGCGGCGTGGAACATTCTTTCTCGCGGTATCAAGAAGCGGTTAGGAGCGGGACACT
CCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACCTGTGTCTGCAAAGCGCGTCGTTGAAACAGGAAGCCCCCACCTCAAGCGCGAGCCGTC
AGGCGAGCGGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
141 bp | 46 aa | 141 | 281 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MDRHEIEGHEVIDGTVKATGNGAHVLVPKRWRGADVKIVRTTEPDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 290 | 1513 | + | No |
AG : TnpB
ORF sequence :
MNYNYRYRLRPSDAHLEQLTWTVDTCRQVYNHFLHRLNRTDDTSAYSEQKLLPSLKKWWDDLKDVHSKVLQKVVQRLYDNLSTLRGRKENGYRVGTLKWK
APGEYRSFTYSQSGFKLKNTSGRTRLWLSKIGEIPLTFHRDLPNDVEIKTVTVKQEPTGKWYAVLGVETPDDPSEKPENPERCVGIDVGILKYAHDTDGN
AVESLDLSDERERLERAQRDLSRKEHGSANWQKQRKVVAERHAELKNKRRDFLHKLSNYYAREYDLVTVEDLDAKGLVELPGNSRNRAGAAWGTFLRMLE
YKCEREGTHFVAVDPAGTTKECASCGVSTDKPLWVREHSCPACGFKADRDANAAWNILSRGIKKRLGAGHSESTPVETALPVDTPVSAKRVVETGSPHLK
REPSGER
APGEYRSFTYSQSGFKLKNTSGRTRLWLSKIGEIPLTFHRDLPNDVEIKTVTVKQEPTGKWYAVLGVETPDDPSEKPENPERCVGIDVGILKYAHDTDGN
AVESLDLSDERERLERAQRDLSRKEHGSANWQKQRKVVAERHAELKNKRRDFLHKLSNYYAREYDLVTVEDLDAKGLVELPGNSRNRAGAAWGTFLRMLE
YKCEREGTHFVAVDPAGTTKECASCGVSTDKPLWVREHSCPACGFKADRDANAAWNILSRGIKKRLGAGHSESTPVETALPVDTPVSAKRVVETGSPHLK
REPSGER
Blast result :
Comments
ISHade1 is 93% (TnpB) aa similar to ISHla22. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.